| Definition | Parabacteroides distasonis ATCC 8503 chromosome, complete genome. |
|---|---|
| Accession | NC_009615 |
| Length | 4,811,379 |
Click here to switch to the map view.
The map label for this gene is 150009332
Identifier: 150009332
GI number: 150009332
Start: 3255899
End: 3257959
Strand: Direct
Name: 150009332
Synonym: BDI_2739
Alternate gene names: NA
Gene position: 3255899-3257959 (Clockwise)
Preceding gene: 150009331
Following gene: 150009342
Centisome position: 67.67
GC content: 48.18
Gene sequence:
>2061_bases ATGAAGCACTTGAGTTCCTCTATTTTATTGGGGCTTGGCTTGTTTTCCTTCTTCTCCTGTAAAGAAGCGACAGCGCCCGC CCCTATCCTGCCCGTTCCCACGCCGGCACAAGTTGAATGGCATAAGATGGAAACATATGCCTTTGTCCATTTCGGATTAA ATACGTTCAATGATCTGGAATGGGGTTACGGAAACACTCCCGCCTCCACATTCAATCCAACGGATCTGGATTGCGATCAA TGGGCGCAAACAATCAAAGCCGCCGGATTGAAAGGCGTAATCTTAACTACCAAGCATCATGACGGTTTCTGTCTATGGCC TACCGCCACAACCGAATATAGCGTAAAGAATTCTCCTTGGAAAGATGGCAAAGGGGATATGGTAAAAGAACTATCCGACG CTTGTAAGAAACACGGGCTGAAATTCGGTGTCTATCTCTCCCCTTGGGACAGAAACAGTGAGAATTACGGACAACCGGGA TATGTAGAGAAATTCCATGCCCAATTACATGAATTAGTCTCCAACTATGGCCCGTTGTTCGAATACTGGTTTGATGGGGC AAACGGTGGCAATGGCTGGTATGGCGGCACGAATGAAACCCGTGCTATAGACGCCAAGACCTATTATCAATATGAGCGGG CATGCGACACGATCAAGGCGCACCACCCGGACATCATGGTTTTCGGAGGGACAGTACCCGATATCCGCTGGATCGGTAAC GAGGAAGGTTGGGCCGGTGATACCCAATGGAGCATCTTCGCCCCGGAACCCTCCATGCCTACTTTCCAACAGAGTGTATG GGGAGATGAGAACGGACCGATGTGGCTAGGTGGAGAATGCGATGTATCTATCCGTCCGGGATGGTTCTATCACTCCCGGG AAGATCACCAAGTCAAGTCGCTGGCAAAATTAGTCGATCTTTATTACCGAAGCGTCGGGCATAACGCCAATTTCCTATTG AACTTCCCCGTAGCGTTGAACGGAAAAATAAGTCCGGTAGACTCCGCCCGTGCCGTACAATGGTATCAAACCATCCAAAA TGACTTTAAGGAGAATCTTTTGAAAGGATGTTACGTACAAGCGAGCAATAAAAGAGGACGTAATTTTAGTCCCAATAAGG CAGTAGATGGGGATTGGGATACCTATTGGGCTACGGACGATGGCGTAACCAGTGGTTCATTGACTTTCACGTTAACCCAT CCTACCGATGTAAACCGCTTGGTCATACAAGAATATATCCCATTAGGACAACGAGTACGCTCGTTCAATATCGAACTCGA GCAAGAGGGTAAATGGATTCCGGCACAGACCGTGGATTCTACGACAACTGTCGGCTATAAACGAATTGTCCGTTTCCAGA CCGAGAAAGCGGAGAAGATACGCATCAACTTCACGGATGCCCGCGGACCGCTTTGTATCAATAACGTGGAGGCATACCTT GCCCCCGCCTTGGTGACCGAGCCAACGATTGCCCGTAATATCAATGACGAGGTAACCATACAGGCCGGGGATAAAGGCTC CGAGGTTCATTATACCACCGACGGCTCAGATCCGACCAAGGACTCACCGCTTTATCAGGCGCCATTCGCTTTCGCTCAAA AAGGAACTGTCAAGGCGATTGCCTATGATCCGACTTTCGATACAGTCAGTCCGGTTTCCGCGCAAACGTTCGATATTCCA GCTTGTGATTACACGATCGTATCACCGAAAGATGAGAAAACCAGCCTGATCCTAGACGGAAACGGCTACACGACCTACTA TTTGCCACAAGGGAAACAAGAGTTAGTCGTACAATTAGCGAAAGAAATGCCTATATCCGGATTCCGCTACACCCCGAACC AAGGACGTGACGCAAGCGGTCATATCTCCAACTATCAATTATATATTAATGGAAAGAAGGTGGCCGAAGGCGAATTCTCC AATATCAAGGCTAACCCGATCGAGCAAGTCGTACATTTCCCAATAACGAAAGGTAACCAAATCCGTTTGGTCGCAACCCG TATCGTAGATAATAAAAAGCAAGCGGGTATCGGTGAATTCTCGGTAATTACGGAAAAATAA
Upstream 100 bases:
>100_bases AGACAGGAGACTTTATCTTTTATCTAGATATCTAAAGACAGAATAAAAATCTGCCGTTTTTTTTCATATATTTGAGGTCT CATCTAAATATAAACAAATA
Downstream 100 bases:
>100_bases AGAATATCTAATAAAAGCAGAAGGGACCGCCTCGAAAACCTAATTTCCCGAGGCGGTCCCTTTTTATTTATTCATCGATC CTTTATTTATCCTTGAAGGT
Product: glycoside hydrolase family protein
Products: NA
Alternate protein names: Glycoside Hydrolase Family; Coagulation Factor 5/8 Type Domain Protein; Calx-Beta Domain-Containing Protein; Alpha-1 3/4-Fucosidase; Glycosyl Hydrolase; Exported Alpha-L-Fucosidase Protein; Lipoprotein; Alpha-L-Fucosidase Protein; Exporte Hydrolase; Alpha-L-Fucosidase Family Protein; Exported Fucosidase; Coagulation Factor 5/8 Type Domain-Containing Protein; Alpha-L-Fucosidase-Like Protein; Glycoside Hydrolase Family Alpha-L-Fucosidase; Glycosyl Hydrolase Alpha-L-Fucosidase; Exported Hydrolase; Ig Domain-Containing; Twin-Arginine Translocation Pathway Signal; Fucosidase; F5/8 Type C Domain-Containing Protein; DS Domain-Containing Protein; Tat Pathway Signal Sequence Domain Protein; Glycoside Hydrolase
Number of amino acids: Translated: 686; Mature: 686
Protein sequence:
>686_residues MKHLSSSILLGLGLFSFFSCKEATAPAPILPVPTPAQVEWHKMETYAFVHFGLNTFNDLEWGYGNTPASTFNPTDLDCDQ WAQTIKAAGLKGVILTTKHHDGFCLWPTATTEYSVKNSPWKDGKGDMVKELSDACKKHGLKFGVYLSPWDRNSENYGQPG YVEKFHAQLHELVSNYGPLFEYWFDGANGGNGWYGGTNETRAIDAKTYYQYERACDTIKAHHPDIMVFGGTVPDIRWIGN EEGWAGDTQWSIFAPEPSMPTFQQSVWGDENGPMWLGGECDVSIRPGWFYHSREDHQVKSLAKLVDLYYRSVGHNANFLL NFPVALNGKISPVDSARAVQWYQTIQNDFKENLLKGCYVQASNKRGRNFSPNKAVDGDWDTYWATDDGVTSGSLTFTLTH PTDVNRLVIQEYIPLGQRVRSFNIELEQEGKWIPAQTVDSTTTVGYKRIVRFQTEKAEKIRINFTDARGPLCINNVEAYL APALVTEPTIARNINDEVTIQAGDKGSEVHYTTDGSDPTKDSPLYQAPFAFAQKGTVKAIAYDPTFDTVSPVSAQTFDIP ACDYTIVSPKDEKTSLILDGNGYTTYYLPQGKQELVVQLAKEMPISGFRYTPNQGRDASGHISNYQLYINGKKVAEGEFS NIKANPIEQVVHFPITKGNQIRLVATRIVDNKKQAGIGEFSVITEK
Sequences:
>Translated_686_residues MKHLSSSILLGLGLFSFFSCKEATAPAPILPVPTPAQVEWHKMETYAFVHFGLNTFNDLEWGYGNTPASTFNPTDLDCDQ WAQTIKAAGLKGVILTTKHHDGFCLWPTATTEYSVKNSPWKDGKGDMVKELSDACKKHGLKFGVYLSPWDRNSENYGQPG YVEKFHAQLHELVSNYGPLFEYWFDGANGGNGWYGGTNETRAIDAKTYYQYERACDTIKAHHPDIMVFGGTVPDIRWIGN EEGWAGDTQWSIFAPEPSMPTFQQSVWGDENGPMWLGGECDVSIRPGWFYHSREDHQVKSLAKLVDLYYRSVGHNANFLL NFPVALNGKISPVDSARAVQWYQTIQNDFKENLLKGCYVQASNKRGRNFSPNKAVDGDWDTYWATDDGVTSGSLTFTLTH PTDVNRLVIQEYIPLGQRVRSFNIELEQEGKWIPAQTVDSTTTVGYKRIVRFQTEKAEKIRINFTDARGPLCINNVEAYL APALVTEPTIARNINDEVTIQAGDKGSEVHYTTDGSDPTKDSPLYQAPFAFAQKGTVKAIAYDPTFDTVSPVSAQTFDIP ACDYTIVSPKDEKTSLILDGNGYTTYYLPQGKQELVVQLAKEMPISGFRYTPNQGRDASGHISNYQLYINGKKVAEGEFS NIKANPIEQVVHFPITKGNQIRLVATRIVDNKKQAGIGEFSVITEK >Mature_686_residues MKHLSSSILLGLGLFSFFSCKEATAPAPILPVPTPAQVEWHKMETYAFVHFGLNTFNDLEWGYGNTPASTFNPTDLDCDQ WAQTIKAAGLKGVILTTKHHDGFCLWPTATTEYSVKNSPWKDGKGDMVKELSDACKKHGLKFGVYLSPWDRNSENYGQPG YVEKFHAQLHELVSNYGPLFEYWFDGANGGNGWYGGTNETRAIDAKTYYQYERACDTIKAHHPDIMVFGGTVPDIRWIGN EEGWAGDTQWSIFAPEPSMPTFQQSVWGDENGPMWLGGECDVSIRPGWFYHSREDHQVKSLAKLVDLYYRSVGHNANFLL NFPVALNGKISPVDSARAVQWYQTIQNDFKENLLKGCYVQASNKRGRNFSPNKAVDGDWDTYWATDDGVTSGSLTFTLTH PTDVNRLVIQEYIPLGQRVRSFNIELEQEGKWIPAQTVDSTTTVGYKRIVRFQTEKAEKIRINFTDARGPLCINNVEAYL APALVTEPTIARNINDEVTIQAGDKGSEVHYTTDGSDPTKDSPLYQAPFAFAQKGTVKAIAYDPTFDTVSPVSAQTFDIP ACDYTIVSPKDEKTSLILDGNGYTTYYLPQGKQELVVQLAKEMPISGFRYTPNQGRDASGHISNYQLYINGKKVAEGEFS NIKANPIEQVVHFPITKGNQIRLVATRIVDNKKQAGIGEFSVITEK
Specific function: Unknown
COG id: COG3669
COG function: function code G; Alpha-L-fucosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 76670; Mature: 76670
Theoretical pI: Translated: 5.85; Mature: 5.85
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKHLSSSILLGLGLFSFFSCKEATAPAPILPVPTPAQVEWHKMETYAFVHFGLNTFNDLE CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCC WGYGNTPASTFNPTDLDCDQWAQTIKAAGLKGVILTTKHHDGFCLWPTATTEYSVKNSPW CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCEEECCCCCCEEEECCCCC KDGKGDMVKELSDACKKHGLKFGVYLSPWDRNSENYGQPGYVEKFHAQLHELVSNYGPLF CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCE EYWFDGANGGNGWYGGTNETRAIDAKTYYQYERACDTIKAHHPDIMVFGGTVPDIRWIGN EHHCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEECC EEGWAGDTQWSIFAPEPSMPTFQQSVWGDENGPMWLGGECDVSIRPGWFYHSREDHQVKS CCCCCCCCEEEEECCCCCCCHHHHHHCCCCCCCEEECCEEEEEECCCEEECCCCCHHHHH LAKLVDLYYRSVGHNANFLLNFPVALNGKISPVDSARAVQWYQTIQNDFKENLLKGCYVQ HHHHHHHHHHHHCCCCEEEEECCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCEEEE ASNKRGRNFSPNKAVDGDWDTYWATDDGVTSGSLTFTLTHPTDVNRLVIQEYIPLGQRVR ECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCHHEE SFNIELEQEGKWIPAQTVDSTTTVGYKRIVRFQTEKAEKIRINFTDARGPLCINNVEAYL EEEEEECCCCCCCCCCCCCCCHHHHHHHHHEEECCCCEEEEEEEECCCCCEEECCCHHHH APALVTEPTIARNINDEVTIQAGDKGSEVHYTTDGSDPTKDSPLYQAPFAFAQKGTVKAI CCHHHCCCHHHCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCEECCHHHHCCCCEEEE AYDPTFDTVSPVSAQTFDIPACDYTIVSPKDEKTSLILDGNGYTTYYLPQGKQELVVQLA EECCCCCCCCCCCCCEEECCCCCEEEECCCCCCEEEEECCCCEEEEECCCCHHHHHHHHH KEMPISGFRYTPNQGRDASGHISNYQLYINGKKVAEGEFSNIKANPIEQVVHFPITKGNQ HHCCCCCEEECCCCCCCCCCCCEEEEEEECCCEEECCCCCCCCCCHHHHHHCCCCCCCCE IRLVATRIVDNKKQAGIGEFSVITEK EEEEEEEECCCCCCCCCCCEEEEECC >Mature Secondary Structure MKHLSSSILLGLGLFSFFSCKEATAPAPILPVPTPAQVEWHKMETYAFVHFGLNTFNDLE CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCC WGYGNTPASTFNPTDLDCDQWAQTIKAAGLKGVILTTKHHDGFCLWPTATTEYSVKNSPW CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCEEECCCCCCEEEECCCCC KDGKGDMVKELSDACKKHGLKFGVYLSPWDRNSENYGQPGYVEKFHAQLHELVSNYGPLF CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCE EYWFDGANGGNGWYGGTNETRAIDAKTYYQYERACDTIKAHHPDIMVFGGTVPDIRWIGN EHHCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEECC EEGWAGDTQWSIFAPEPSMPTFQQSVWGDENGPMWLGGECDVSIRPGWFYHSREDHQVKS CCCCCCCCEEEEECCCCCCCHHHHHHCCCCCCCEEECCEEEEEECCCEEECCCCCHHHHH LAKLVDLYYRSVGHNANFLLNFPVALNGKISPVDSARAVQWYQTIQNDFKENLLKGCYVQ HHHHHHHHHHHHCCCCEEEEECCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCEEEE ASNKRGRNFSPNKAVDGDWDTYWATDDGVTSGSLTFTLTHPTDVNRLVIQEYIPLGQRVR ECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCHHEE SFNIELEQEGKWIPAQTVDSTTTVGYKRIVRFQTEKAEKIRINFTDARGPLCINNVEAYL EEEEEECCCCCCCCCCCCCCCHHHHHHHHHEEECCCCEEEEEEEECCCCCEEECCCHHHH APALVTEPTIARNINDEVTIQAGDKGSEVHYTTDGSDPTKDSPLYQAPFAFAQKGTVKAI CCHHHCCCHHHCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCEECCHHHHCCCCEEEE AYDPTFDTVSPVSAQTFDIPACDYTIVSPKDEKTSLILDGNGYTTYYLPQGKQELVVQLA EECCCCCCCCCCCCCEEECCCCCEEEECCCCCCEEEEECCCCEEEEECCCCHHHHHHHHH KEMPISGFRYTPNQGRDASGHISNYQLYINGKKVAEGEFSNIKANPIEQVVHFPITKGNQ HHCCCCCEEECCCCCCCCCCCCEEEEEEECCCEEECCCCCCCCCCHHHHHHCCCCCCCCE IRLVATRIVDNKKQAGIGEFSVITEK EEEEEEEECCCCCCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA