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The map label for this gene is gcdB [H]

Identifier: 150009282

GI number: 150009282

Start: 3189620

End: 3190855

Strand: Direct

Name: gcdB [H]

Synonym: BDI_2684

Alternate gene names: 150009282

Gene position: 3189620-3190855 (Clockwise)

Preceding gene: 150009281

Following gene: 150009283

Centisome position: 66.29

GC content: 47.82

Gene sequence:

>1236_bases
ATGAACGAGATATTTCAAAACTTATATGAGATGACTGCGTTCAGCAATATCATTGCTGAACCGCAGTTCTTGATCATGTA
TGCCATAGCGTTCGTATTGCTCTACCTCGGTATCAAGAAACAATACGAGCCGCTATTGCTCGTGCCTATCGCGTTCGGCG
TATTGCTCGCCAATTTCCCCGGAGGCGATATGGGAGTGATTCAAGCGGATGAGAATGGGTTGGTTAATGTACACGGCGTG
ATGAGAAACATCTGGGAAATGCCGCTGCATGATATCGCACACGAACTTGGCTTGATGAACTTCATCTATTATATGTTGAT
CAAGACGGGCTTCTTGCCGCCGATTATCTTCATGGGTGTCGGTGCGTTGACCGACTTCGGACCGATGCTCCGTAACCTTC
GCCTATCCATTTTCGGCGCCGCGGCTCAATTGGGAATCTTCACGGTGCTTTTGGTAGCGATCTTGATGGGATTCACACCA
AAAGAGGCAGCGTCTTTAGGTATTATCGGTGGCGCCGATGGCCCGACGGCTATCTTCACGACCATTAAATTGGCTCCGCA
TTTGCTAGGCCCGATCGCTATCGCCGCTTATTCTTACATGGCTTTGGTACCGGTTATCATCCCGTTGGTCGTTAAGCTAC
TGTGTTCTAAGAAAGAATTACAGATCAACATGAAGGAACAAGAGAAGAAATACCCTTCTAACATGGAGATCAAGAATTTG
CGTGTATTGAAGATTATCTTCCCGATCGTGGTAACTACCGTAGTCGCCCTGTTTGTTCCCAGCTCCGTTCCTTTGATCGG
TATGTTGATGTTCGGTAATCTTGTAAAAGAGATCGGAACCAATACGTTCCGTCTGTTCGATGCCGCTTCCAACAGTATCA
TGAACGCAGCCACGATCTTCCTCGGATTATCCGTCGGGGCAACCATGACCACGGAAGCGTTCTTGAACCTAACAACAATC
GGTATCGTAATCGGCGGTTTCTTGGCATTCGCCTTGTCTATCGCCGGAGGTATCTTCTTCGTTAAGATTTTCAATTTGTT
CACTAAGAAGAAAATCAATCCGCTTATCGGAGCCACGGGTTTAAGCGCCGTGCCAATGGCCTCTCGTGTGGCGAATGAGA
TCGCGTTGCAATATGATCCGAAGAACCATGTCTTGCAATATTGCATGGCTAGTAATATCTCGGGAGTGATCGGCTCGGCG
GTAGCTGCCGGCGTATTGATTTCCTTCTTGGGATAA

Upstream 100 bases:

>100_bases
ACAATGCCGTACGTGCCGAGTTCGGGGGAACGATCACGGCGATCTGCCTGTCTTCCGGTGATGCCGTATCTGAGGATGAT
GTATTAATGACGATTCAATA

Downstream 100 bases:

>100_bases
ATAAGATTAAATAGTATAAGTAGACGGTGGGAGACGGGGCATGCCCCGTCTCTACAACCGGAATCAAGAGAAATAGGCCA
ACCTTAACATCTATTAGTAT

Product: oxaloacetate decarboxylase subunit beta

Products: NA

Alternate protein names: Carboxylyase [H]

Number of amino acids: Translated: 411; Mature: 411

Protein sequence:

>411_residues
MNEIFQNLYEMTAFSNIIAEPQFLIMYAIAFVLLYLGIKKQYEPLLLVPIAFGVLLANFPGGDMGVIQADENGLVNVHGV
MRNIWEMPLHDIAHELGLMNFIYYMLIKTGFLPPIIFMGVGALTDFGPMLRNLRLSIFGAAAQLGIFTVLLVAILMGFTP
KEAASLGIIGGADGPTAIFTTIKLAPHLLGPIAIAAYSYMALVPVIIPLVVKLLCSKKELQINMKEQEKKYPSNMEIKNL
RVLKIIFPIVVTTVVALFVPSSVPLIGMLMFGNLVKEIGTNTFRLFDAASNSIMNAATIFLGLSVGATMTTEAFLNLTTI
GIVIGGFLAFALSIAGGIFFVKIFNLFTKKKINPLIGATGLSAVPMASRVANEIALQYDPKNHVLQYCMASNISGVIGSA
VAAGVLISFLG

Sequences:

>Translated_411_residues
MNEIFQNLYEMTAFSNIIAEPQFLIMYAIAFVLLYLGIKKQYEPLLLVPIAFGVLLANFPGGDMGVIQADENGLVNVHGV
MRNIWEMPLHDIAHELGLMNFIYYMLIKTGFLPPIIFMGVGALTDFGPMLRNLRLSIFGAAAQLGIFTVLLVAILMGFTP
KEAASLGIIGGADGPTAIFTTIKLAPHLLGPIAIAAYSYMALVPVIIPLVVKLLCSKKELQINMKEQEKKYPSNMEIKNL
RVLKIIFPIVVTTVVALFVPSSVPLIGMLMFGNLVKEIGTNTFRLFDAASNSIMNAATIFLGLSVGATMTTEAFLNLTTI
GIVIGGFLAFALSIAGGIFFVKIFNLFTKKKINPLIGATGLSAVPMASRVANEIALQYDPKNHVLQYCMASNISGVIGSA
VAAGVLISFLG
>Mature_411_residues
MNEIFQNLYEMTAFSNIIAEPQFLIMYAIAFVLLYLGIKKQYEPLLLVPIAFGVLLANFPGGDMGVIQADENGLVNVHGV
MRNIWEMPLHDIAHELGLMNFIYYMLIKTGFLPPIIFMGVGALTDFGPMLRNLRLSIFGAAAQLGIFTVLLVAILMGFTP
KEAASLGIIGGADGPTAIFTTIKLAPHLLGPIAIAAYSYMALVPVIIPLVVKLLCSKKELQINMKEQEKKYPSNMEIKNL
RVLKIIFPIVVTTVVALFVPSSVPLIGMLMFGNLVKEIGTNTFRLFDAASNSIMNAATIFLGLSVGATMTTEAFLNLTTI
GIVIGGFLAFALSIAGGIFFVKIFNLFTKKKINPLIGATGLSAVPMASRVANEIALQYDPKNHVLQYCMASNISGVIGSA
VAAGVLISFLG

Specific function: Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD) [H]

COG id: COG1883

COG function: function code C; Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gcdB/mmdB/oadB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005661 [H]

Pfam domain/function: PF03977 OAD_beta [H]

EC number: =4.1.1.70 [H]

Molecular weight: Translated: 44288; Mature: 44288

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEIFQNLYEMTAFSNIIAEPQFLIMYAIAFVLLYLGIKKQYEPLLLVPIAFGVLLANFP
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCC
GGDMGVIQADENGLVNVHGVMRNIWEMPLHDIAHELGLMNFIYYMLIKTGFLPPIIFMGV
CCCEEEEEECCCCCEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
GALTDFGPMLRNLRLSIFGAAAQLGIFTVLLVAILMGFTPKEAASLGIIGGADGPTAIFT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCEEEEECCCCCHHHHH
TIKLAPHLLGPIAIAAYSYMALVPVIIPLVVKLLCSKKELQINMKEQEKKYPSNMEIKNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEECCHHHHHCCCCCCCHHHH
RVLKIIFPIVVTTVVALFVPSSVPLIGMLMFGNLVKEIGTNTFRLFDAASNSIMNAATIF
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHCCHHHHHHHHH
LGLSVGATMTTEAFLNLTTIGIVIGGFLAFALSIAGGIFFVKIFNLFTKKKINPLIGATG
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCC
LSAVPMASRVANEIALQYDPKNHVLQYCMASNISGVIGSAVAAGVLISFLG
CCHHHHHHHHHHHHHEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNEIFQNLYEMTAFSNIIAEPQFLIMYAIAFVLLYLGIKKQYEPLLLVPIAFGVLLANFP
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCC
GGDMGVIQADENGLVNVHGVMRNIWEMPLHDIAHELGLMNFIYYMLIKTGFLPPIIFMGV
CCCEEEEEECCCCCEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
GALTDFGPMLRNLRLSIFGAAAQLGIFTVLLVAILMGFTPKEAASLGIIGGADGPTAIFT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCEEEEECCCCCHHHHH
TIKLAPHLLGPIAIAAYSYMALVPVIIPLVVKLLCSKKELQINMKEQEKKYPSNMEIKNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEECCHHHHHCCCCCCCHHHH
RVLKIIFPIVVTTVVALFVPSSVPLIGMLMFGNLVKEIGTNTFRLFDAASNSIMNAATIF
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHCCHHHHHHHHH
LGLSVGATMTTEAFLNLTTIGIVIGGFLAFALSIAGGIFFVKIFNLFTKKKINPLIGATG
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCC
LSAVPMASRVANEIALQYDPKNHVLQYCMASNISGVIGSAVAAGVLISFLG
CCHHHHHHHHHHHHHEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10027965 [H]