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The map label for this gene is algU [H]

Identifier: 150009240

GI number: 150009240

Start: 3122256

End: 3122819

Strand: Reverse

Name: algU [H]

Synonym: BDI_2642

Alternate gene names: 150009240

Gene position: 3122819-3122256 (Counterclockwise)

Preceding gene: 150009241

Following gene: 150009239

Centisome position: 64.9

GC content: 45.39

Gene sequence:

>564_bases
ATGGATGAGCGAAAGTGGATAGAACGTATTTTGGCAGGGGACACGCAAAGTTTCTCCTGCCTTGTCGCGAAGTATGAGAA
GATGGCTTATACCATCGCTCTTCGTATCTTGGAAAATCGCGAGGAGGCAGAAGAGGCTGTACAGGATGCGTTCGTGAAGA
TGTATCGTGCTCTTTCCGATTTTCATTTCGATAGTAAGTTCTCAACATGGTTTTATAGGATCGTGTATCGTACGGCGTTG
ACGGCCTTGAGACAACAGCGTATGTTCGTGAGTTATGAGGAGGCGGGCCCTGTAGACCTTTCGAATGACGAAGTTGAATC
GGCTACGGCTTTATTAGAGCGTGAGGACCGGAAAGAGATGATCGCACGTACGCTGAAAAAGCTTCCGGCTGATGAGGCCT
TGTTGCTTACTCTTTATTATTTGGAGGAATGCTCGGTGGAAGAGATCTGTCAGATCACTGAATTGAGCGCTTCTAATGTG
AAAGTAAAACTATTCCGTGGGCGGAAACGGTTTTATGAAGTGTTGCAAGATAAAATGAAATTAGAGACAGCTGATTTGTT
ATGA

Upstream 100 bases:

>100_bases
GTAGCTTTTATAATTTATTTCTTTCTTTCCCGTTCTTTAATGGAGAAGGAGAGATTGGAGGACGAGAAGAAAATGCGTCT
GGAAGAATAAACGATACCGG

Downstream 100 bases:

>100_bases
ATATGAATGAGAAAGATATTGATCATTTGACACGTAAGTTGATGAGAGGGACGGCGGAACAACCTTCGGCCTCATTAAAC
TCCCGTATTATGGCATTGAT

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MDERKWIERILAGDTQSFSCLVAKYEKMAYTIALRILENREEAEEAVQDAFVKMYRALSDFHFDSKFSTWFYRIVYRTAL
TALRQQRMFVSYEEAGPVDLSNDEVESATALLEREDRKEMIARTLKKLPADEALLLTLYYLEECSVEEICQITELSASNV
KVKLFRGRKRFYEVLQDKMKLETADLL

Sequences:

>Translated_187_residues
MDERKWIERILAGDTQSFSCLVAKYEKMAYTIALRILENREEAEEAVQDAFVKMYRALSDFHFDSKFSTWFYRIVYRTAL
TALRQQRMFVSYEEAGPVDLSNDEVESATALLEREDRKEMIARTLKKLPADEALLLTLYYLEECSVEEICQITELSASNV
KVKLFRGRKRFYEVLQDKMKLETADLL
>Mature_187_residues
MDERKWIERILAGDTQSFSCLVAKYEKMAYTIALRILENREEAEEAVQDAFVKMYRALSDFHFDSKFSTWFYRIVYRTAL
TALRQQRMFVSYEEAGPVDLSNDEVESATALLEREDRKEMIARTLKKLPADEALLLTLYYLEECSVEEICQITELSASNV
KVKLFRGRKRFYEVLQDKMKLETADLL

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=170, Percent_Identity=30.5882352941176, Blast_Score=89, Evalue=1e-19,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21985; Mature: 21985

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDERKWIERILAGDTQSFSCLVAKYEKMAYTIALRILENREEAEEAVQDAFVKMYRALSD
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
FHFDSKFSTWFYRIVYRTALTALRQQRMFVSYEEAGPVDLSNDEVESATALLEREDRKEM
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
IARTLKKLPADEALLLTLYYLEECSVEEICQITELSASNVKVKLFRGRKRFYEVLQDKMK
HHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHH
LETADLL
HHHHCCC
>Mature Secondary Structure
MDERKWIERILAGDTQSFSCLVAKYEKMAYTIALRILENREEAEEAVQDAFVKMYRALSD
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
FHFDSKFSTWFYRIVYRTALTALRQQRMFVSYEEAGPVDLSNDEVESATALLEREDRKEM
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
IARTLKKLPADEALLLTLYYLEECSVEEICQITELSASNVKVKLFRGRKRFYEVLQDKMK
HHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHH
LETADLL
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]