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The map label for this gene is psd

Identifier: 150009168

GI number: 150009168

Start: 3040578

End: 3041240

Strand: Reverse

Name: psd

Synonym: BDI_2570

Alternate gene names: 150009168

Gene position: 3041240-3040578 (Counterclockwise)

Preceding gene: 150009169

Following gene: 150009167

Centisome position: 63.21

GC content: 46.0

Gene sequence:

>663_bases
ATGAAAGTACATAAAGAAGGAACCGGTTTACTGCTTACGTTGTTTACAATATTATTTATTGTGAATATAACTTTGTACCA
TACGGTAGGTAAGGGTATGCTGTTTTATTCTGTCGCTTTTGTTTCTACCGTATTGTTCCTATTGGTATTAAACTTCTTCC
GTAGTCCTTTCCGCCGGTTTCCTTATGATTCGGAAGGCTTGGTGATCGCTCCCGCCGACGGTACGATCGTTGCCATCGAG
GAAGTGATGGAGAACGAGATCCTTCATAAGAAGTGCCTACAGATATCTATCTTTATGTCTATCTTCAACGTGCATGCTAA
TTGGTTTCCCGTAAACGGTACCGTTAAGCATGTTTCCCACCAGAACGGGCGTTTTATGGCGGCTTATCTGCCGAAGAGTA
GTACGGAGAACGAACGTTCGGCGGTCGTGATTACCACGAGGAACGGGGTGGATGTCTTGGCTCGTCAGATTGCCGGGGCG
ATGGCACGCCGCATCGTTACGTATGCCAAGCCGGGAGAGAAATGTCATGTGGACGAGCAAATGGGGTTTATTAAATTCGG
TTCTCGCGTGGATGTCTACCTGCCGGTAGGAACAGAGGTGTTAATAGAGATGGATCAAAAAGTAACAGGCAATCAAACGC
CTATAGCCCGTTTGTCAAAATGA

Upstream 100 bases:

>100_bases
AGGTAAAATAGAGGCAGTGAATAAGTGATATATTTTTGATATTCGGTAAAAATGAATATTTTTGCAGATTCTTAGTATAA
AACGATACAGTCAAAGAAGA

Downstream 100 bases:

>100_bases
GTATAAGAAAACATATTCCTAATACAATTACGTGTCTAAGCCTTCTGTCCGGTTGTGTCGCCAGTGTTATGGCCTTGCAC
GGAAATCTTTTATCTGCGTT

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MKVHKEGTGLLLTLFTILFIVNITLYHTVGKGMLFYSVAFVSTVLFLLVLNFFRSPFRRFPYDSEGLVIAPADGTIVAIE
EVMENEILHKKCLQISIFMSIFNVHANWFPVNGTVKHVSHQNGRFMAAYLPKSSTENERSAVVITTRNGVDVLARQIAGA
MARRIVTYAKPGEKCHVDEQMGFIKFGSRVDVYLPVGTEVLIEMDQKVTGNQTPIARLSK

Sequences:

>Translated_220_residues
MKVHKEGTGLLLTLFTILFIVNITLYHTVGKGMLFYSVAFVSTVLFLLVLNFFRSPFRRFPYDSEGLVIAPADGTIVAIE
EVMENEILHKKCLQISIFMSIFNVHANWFPVNGTVKHVSHQNGRFMAAYLPKSSTENERSAVVITTRNGVDVLARQIAGA
MARRIVTYAKPGEKCHVDEQMGFIKFGSRVDVYLPVGTEVLIEMDQKVTGNQTPIARLSK
>Mature_220_residues
MKVHKEGTGLLLTLFTILFIVNITLYHTVGKGMLFYSVAFVSTVLFLLVLNFFRSPFRRFPYDSEGLVIAPADGTIVAIE
EVMENEILHKKCLQISIFMSIFNVHANWFPVNGTVKHVSHQNGRFMAAYLPKSSTENERSAVVITTRNGVDVLARQIAGA
MARRIVTYAKPGEKCHVDEQMGFIKFGSRVDVYLPVGTEVLIEMDQKVTGNQTPIARLSK

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_PARD8 (A6LF25)

Other databases:

- EMBL:   CP000140
- RefSeq:   YP_001303911.1
- STRING:   A6LF25
- GeneID:   5307719
- GenomeReviews:   CP000140_GR
- KEGG:   pdi:BDI_2570
- eggNOG:   COG0688
- HOGENOM:   HBG541103
- OMA:   IFMSVFN
- ProtClustDB:   PRK05305
- BioCyc:   PDIS435591:BDI_2570-MONOMER
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 24641; Mature: 24641

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVHKEGTGLLLTLFTILFIVNITLYHTVGKGMLFYSVAFVSTVLFLLVLNFFRSPFRRF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PYDSEGLVIAPADGTIVAIEEVMENEILHKKCLQISIFMSIFNVHANWFPVNGTVKHVSH
CCCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEC
QNGRFMAAYLPKSSTENERSAVVITTRNGVDVLARQIAGAMARRIVTYAKPGEKCHVDEQ
CCCCEEEEECCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
MGFIKFGSRVDVYLPVGTEVLIEMDQKVTGNQTPIARLSK
CCEEEECCEEEEEECCCCEEEEEECCCCCCCCCCHHCCCC
>Mature Secondary Structure
MKVHKEGTGLLLTLFTILFIVNITLYHTVGKGMLFYSVAFVSTVLFLLVLNFFRSPFRRF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PYDSEGLVIAPADGTIVAIEEVMENEILHKKCLQISIFMSIFNVHANWFPVNGTVKHVSH
CCCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEC
QNGRFMAAYLPKSSTENERSAVVITTRNGVDVLARQIAGAMARRIVTYAKPGEKCHVDEQ
CCCCEEEEECCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
MGFIKFGSRVDVYLPVGTEVLIEMDQKVTGNQTPIARLSK
CCEEEECCEEEEEECCCCEEEEEECCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA