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The map label for this gene is rhaR [H]

Identifier: 150008871

GI number: 150008871

Start: 2652698

End: 2653582

Strand: Reverse

Name: rhaR [H]

Synonym: BDI_2261

Alternate gene names: 150008871

Gene position: 2653582-2652698 (Counterclockwise)

Preceding gene: 150008872

Following gene: 150008870

Centisome position: 55.15

GC content: 41.36

Gene sequence:

>885_bases
ATGGGGAAAGTAGACGTATTGAAGGAAACTACCCCGCTTTCATCAGAAGATTGCTTCTTGGTCATGCAACGCCCGAAATC
GGGGTTTAATTTTCCGTTACATGTACACATGGAGTTTGAGTTGAACTATCTGGAGAATGCCGCTGGCGCTATTCGGATAG
TTGGCGATTCGGTCGAGGAAATCGATGATCTGGATTTGGTGTTGATCGCGGGAGGAACGAAGCATGCTTACTCGAACCAT
AAGTGTCCGTGTAATGGGATCTTTGAGATAACGATACAATTTCATAAATCGTTATTTGATAGCTTAATCAATAGACGGCA
TTTCAAGACCATGAAGGATATGTTTGATAACGCTTCCAGTGGTCTTGTTTTCAGCCGGGAAATGATACTTGGCATTCAAG
ATAAATTAAGAATGTTGTCGAACGATAACAAGCCGGATTCTTTCAAGAACCTGTTGCGTTTGGTCGAGATTCTTAAGATT
CTATCTTTGGATAAAGCAGCCCGTCGGTTGAATGCCGTGAACACGGTAAAGAACTATAATAATAACGATACCGATCGTTT
AGATAGTATCATGTTATATTTACACGAAAATTATCAAAAACGTATCACCTTGTCGGAAGTGGCTAAGTTAACAAATATGA
GCGATGCCTCATTGATGCGTTTCTTGAAGAAGTGGACGGGAAAGACATTTATCGATAACTTGAACGAGATCCGGGTAGCT
GAGGCGGTATGCCGTTTGACCGATACAAGTGACAGTATTTCTGAAATATGTTACAGGTGCGGTTTTAATAATCTATCGAA
TTTCAACCGGGTATTCAAACGGCGTAGGGGGAGTACCCCTACAGAGTACAGGGAGAAATATTCCCGTTCGAGGTTTATAA
TTTAA

Upstream 100 bases:

>100_bases
GCGTCATGGTGTATTGACTGAAACGTTGAATAACCTGTTCCCATCCGACCATTGCCCGGTAATCAGTACGTTGATACTCG
AATAAAAAAGCTTTGTGTGT

Downstream 100 bases:

>100_bases
AACATGATTTAAAGCATGTTTACATTGATTTGTGTCAAGTGTTGATGATATAGTATTATTTATTGCACATATAGTATTTG
GTGGTCTTTGCTAAAGCCCT

Product: putative transcriptional regulator

Products: NA

Alternate protein names: L-rhamnose operon transcriptional activator rhaR [H]

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MGKVDVLKETTPLSSEDCFLVMQRPKSGFNFPLHVHMEFELNYLENAAGAIRIVGDSVEEIDDLDLVLIAGGTKHAYSNH
KCPCNGIFEITIQFHKSLFDSLINRRHFKTMKDMFDNASSGLVFSREMILGIQDKLRMLSNDNKPDSFKNLLRLVEILKI
LSLDKAARRLNAVNTVKNYNNNDTDRLDSIMLYLHENYQKRITLSEVAKLTNMSDASLMRFLKKWTGKTFIDNLNEIRVA
EAVCRLTDTSDSISEICYRCGFNNLSNFNRVFKRRRGSTPTEYREKYSRSRFII

Sequences:

>Translated_294_residues
MGKVDVLKETTPLSSEDCFLVMQRPKSGFNFPLHVHMEFELNYLENAAGAIRIVGDSVEEIDDLDLVLIAGGTKHAYSNH
KCPCNGIFEITIQFHKSLFDSLINRRHFKTMKDMFDNASSGLVFSREMILGIQDKLRMLSNDNKPDSFKNLLRLVEILKI
LSLDKAARRLNAVNTVKNYNNNDTDRLDSIMLYLHENYQKRITLSEVAKLTNMSDASLMRFLKKWTGKTFIDNLNEIRVA
EAVCRLTDTSDSISEICYRCGFNNLSNFNRVFKRRRGSTPTEYREKYSRSRFII
>Mature_293_residues
GKVDVLKETTPLSSEDCFLVMQRPKSGFNFPLHVHMEFELNYLENAAGAIRIVGDSVEEIDDLDLVLIAGGTKHAYSNHK
CPCNGIFEITIQFHKSLFDSLINRRHFKTMKDMFDNASSGLVFSREMILGIQDKLRMLSNDNKPDSFKNLLRLVEILKIL
SLDKAARRLNAVNTVKNYNNNDTDRLDSIMLYLHENYQKRITLSEVAKLTNMSDASLMRFLKKWTGKTFIDNLNEIRVAE
AVCRLTDTSDSISEICYRCGFNNLSNFNRVFKRRRGSTPTEYREKYSRSRFII

Specific function: Activates expression of the rhaSR operon in response to L-rhamnose [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33947; Mature: 33816

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKVDVLKETTPLSSEDCFLVMQRPKSGFNFPLHVHMEFELNYLENAAGAIRIVGDSVEE
CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEEEECHHHCCCCEEEEECCCHHH
IDDLDLVLIAGGTKHAYSNHKCPCNGIFEITIQFHKSLFDSLINRRHFKTMKDMFDNASS
HCCCCEEEEECCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GLVFSREMILGIQDKLRMLSNDNKPDSFKNLLRLVEILKILSLDKAARRLNAVNTVKNYN
CEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NNDTDRLDSIMLYLHENYQKRITLSEVAKLTNMSDASLMRFLKKWTGKTFIDNLNEIRVA
CCCHHHHHHHHHHHHHHHHHEECHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
EAVCRLTDTSDSISEICYRCGFNNLSNFNRVFKRRRGSTPTEYREKYSRSRFII
HHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
GKVDVLKETTPLSSEDCFLVMQRPKSGFNFPLHVHMEFELNYLENAAGAIRIVGDSVEE
CCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEEEECHHHCCCCEEEEECCCHHH
IDDLDLVLIAGGTKHAYSNHKCPCNGIFEITIQFHKSLFDSLINRRHFKTMKDMFDNASS
HCCCCEEEEECCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GLVFSREMILGIQDKLRMLSNDNKPDSFKNLLRLVEILKILSLDKAARRLNAVNTVKNYN
CEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NNDTDRLDSIMLYLHENYQKRITLSEVAKLTNMSDASLMRFLKKWTGKTFIDNLNEIRVA
CCCHHHHHHHHHHHHHHHHHEECHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
EAVCRLTDTSDSISEICYRCGFNNLSNFNRVFKRRRGSTPTEYREKYSRSRFII
HHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA