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The map label for this gene is xylB [H]

Identifier: 150008789

GI number: 150008789

Start: 2563621

End: 2565162

Strand: Direct

Name: xylB [H]

Synonym: BDI_2179

Alternate gene names: 150008789

Gene position: 2563621-2565162 (Clockwise)

Preceding gene: 150008788

Following gene: 150008790

Centisome position: 53.28

GC content: 51.04

Gene sequence:

>1542_bases
ATGAGAAAGATTTTCACACTATTCTTCTGTGCCGCCTCCTTGGCCACAGGACTAGCGCAACAAGAATCCTATTTTACCAA
TCCCGTGATCCACGGTGACGTAGCCGATCCTTCCATTATTCGGATCGATCAGACTTACTATATCACCGGCACCTCCTCGG
AATGGGCCCCCTATTATCCGGTTTTCACCTCTACCGATCTGGTGAACTGGCAGCAAACCGGACATGTATTCGACGAGAAG
CCGGAATGGACTAAGTCCTCTTTCTGGGCTCCGGAATGGTATCAGCATAAAGGGAAGGTATATGTCTATTATACGGCCCG
GAAGCAATCGGATAACATCTCGTGCATCGGTGTTGCCGTGGCGGATTCACCTACGGGCAAGTTCAAGGATCACGGCCCGG
TGGTAGAGTTCGGGAAGGAAGCGATAGACGCATTTATCTTGGAGGATAAAGGCAAACTTTACATCAGTTGGAAGGCTTAT
GGATTGGATAACCAACCCATAGAGTTATTGGCCTGTAAGTTGACGGACGATGGGCTTCGCCTAGACGGAAAGCCTTTCAG
CCTGCTGCGTGACGATGAGCGTCAAGGTATGGAAGGTCAGCATTGGTTCAAGAAAGACGGATATTACTATATCATCTACT
CCGTGAGAGGCTGTTGCGGCCCGCAGAGCGATTACGCCGTATCCGTGGCTCGCTCGAAGAAGCTGGAAGGTCCTTACGAG
AAATACCTAGGAAACCCGATCTTGCACGGAAGCAAGGAGGTTCTCTCCATCGGTCACGGAACGATTACGACTACACCGGA
CGGACGCATGTATTACCTATGCCACGCTTACCAGCCGGGAAGCGGCTTCTACCAAGGTCGCCAACCTTACCTGCAAGAGG
TGAGAATGGGTGAGGATCATTGGCCTCACTTCGTAACCGGGGAATACGCGAGCCGCACGCAACCCATGCCATTTGCCGAG
TCCGCACAAGTGCCGGTATTCGATTTCTCGGATGATTTCACCGGTGCGACCTTGCGTCCCGAATGGAGTTGGAACTATCC
TTACACGGATGTCAAGACCGAGATCAAGAACGGTAAACTATCTCTATCCGGAACACCGAAACCCGGCGTAAAGACCGGAG
CGGCACTTTGTTTACGCCCAACCTCCCCGAATTACACGTTGGAAACAGCGATCGTAAACCGGAATGACAGTTGGAAAGGA
ATCACGATGTACGGAGACGCAAATAACCTAATCACCTGCGGATGCGCAGGAGACCGTTTGATATTGAAATATATCTTAGA
GGGGAAAGAACATCAATTGGCCGATCTTCCTCTTCCCGCCTCGCCTTTATATCTACAGATGAAAGTGACCGACGGTACGC
ATAGCACGTTCTACTGGAGTAAGGACGGACAAGCATGGAACGAGATCGTCGGCGAAGCTCTCTCCGCGAAAGAGACCCGG
TCGTTGATCCAATGGGATCGTATCTCCCGTCCGGGATTGTATCAAGAGGGAGATCCTACGGCACCGGCCGTTTACGCTTA
TTGTCTATTAAAAAATGAATGA

Upstream 100 bases:

>100_bases
ACAGGAGTATAAGACACTACTCGATCTGGCGGAACCCGATTTACTACAAATCTCTTTGCGAACCGTACGTAAGAACATCT
TAAAAAAAATACGATAAAAC

Downstream 100 bases:

>100_bases
TGGAATCTAAGTTTCACACGTTTGCCCAACCGATACAATCGATCCCCTTACCGGAACGATTCACGTATCCTTTTCACTAT
ACACCGCATCCTCTATGCGT

Product: glycoside hydrolase family beta-glycosidase

Products: NA

Alternate protein names: Beta-xylosidase; 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase; Alpha-N-arabinofuranosidase; Arabinosidase [H]

Number of amino acids: Translated: 513; Mature: 513

Protein sequence:

>513_residues
MRKIFTLFFCAASLATGLAQQESYFTNPVIHGDVADPSIIRIDQTYYITGTSSEWAPYYPVFTSTDLVNWQQTGHVFDEK
PEWTKSSFWAPEWYQHKGKVYVYYTARKQSDNISCIGVAVADSPTGKFKDHGPVVEFGKEAIDAFILEDKGKLYISWKAY
GLDNQPIELLACKLTDDGLRLDGKPFSLLRDDERQGMEGQHWFKKDGYYYIIYSVRGCCGPQSDYAVSVARSKKLEGPYE
KYLGNPILHGSKEVLSIGHGTITTTPDGRMYYLCHAYQPGSGFYQGRQPYLQEVRMGEDHWPHFVTGEYASRTQPMPFAE
SAQVPVFDFSDDFTGATLRPEWSWNYPYTDVKTEIKNGKLSLSGTPKPGVKTGAALCLRPTSPNYTLETAIVNRNDSWKG
ITMYGDANNLITCGCAGDRLILKYILEGKEHQLADLPLPASPLYLQMKVTDGTHSTFYWSKDGQAWNEIVGEALSAKETR
SLIQWDRISRPGLYQEGDPTAPAVYAYCLLKNE

Sequences:

>Translated_513_residues
MRKIFTLFFCAASLATGLAQQESYFTNPVIHGDVADPSIIRIDQTYYITGTSSEWAPYYPVFTSTDLVNWQQTGHVFDEK
PEWTKSSFWAPEWYQHKGKVYVYYTARKQSDNISCIGVAVADSPTGKFKDHGPVVEFGKEAIDAFILEDKGKLYISWKAY
GLDNQPIELLACKLTDDGLRLDGKPFSLLRDDERQGMEGQHWFKKDGYYYIIYSVRGCCGPQSDYAVSVARSKKLEGPYE
KYLGNPILHGSKEVLSIGHGTITTTPDGRMYYLCHAYQPGSGFYQGRQPYLQEVRMGEDHWPHFVTGEYASRTQPMPFAE
SAQVPVFDFSDDFTGATLRPEWSWNYPYTDVKTEIKNGKLSLSGTPKPGVKTGAALCLRPTSPNYTLETAIVNRNDSWKG
ITMYGDANNLITCGCAGDRLILKYILEGKEHQLADLPLPASPLYLQMKVTDGTHSTFYWSKDGQAWNEIVGEALSAKETR
SLIQWDRISRPGLYQEGDPTAPAVYAYCLLKNE
>Mature_513_residues
MRKIFTLFFCAASLATGLAQQESYFTNPVIHGDVADPSIIRIDQTYYITGTSSEWAPYYPVFTSTDLVNWQQTGHVFDEK
PEWTKSSFWAPEWYQHKGKVYVYYTARKQSDNISCIGVAVADSPTGKFKDHGPVVEFGKEAIDAFILEDKGKLYISWKAY
GLDNQPIELLACKLTDDGLRLDGKPFSLLRDDERQGMEGQHWFKKDGYYYIIYSVRGCCGPQSDYAVSVARSKKLEGPYE
KYLGNPILHGSKEVLSIGHGTITTTPDGRMYYLCHAYQPGSGFYQGRQPYLQEVRMGEDHWPHFVTGEYASRTQPMPFAE
SAQVPVFDFSDDFTGATLRPEWSWNYPYTDVKTEIKNGKLSLSGTPKPGVKTGAALCLRPTSPNYTLETAIVNRNDSWKG
ITMYGDANNLITCGCAGDRLILKYILEGKEHQLADLPLPASPLYLQMKVTDGTHSTFYWSKDGQAWNEIVGEALSAKETR
SLIQWDRISRPGLYQEGDPTAPAVYAYCLLKNE

Specific function: Has a 1.6-fold higher activity as an arabinosidase than as a beta-xylosidase when tested on the substrates nitrophenyl- beta-D-xylopyranoside and P-nitrophenyl-alpha-L-arabinofuranoside [H]

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=347, Percent_Identity=25.0720461095101, Blast_Score=79, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR006710 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.37; =3.2.1.55 [H]

Molecular weight: Translated: 57830; Mature: 57830

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKIFTLFFCAASLATGLAQQESYFTNPVIHGDVADPSIIRIDQTYYITGTSSEWAPYYP
CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEEEEEEEEECCCCCCCCCC
VFTSTDLVNWQQTGHVFDEKPEWTKSSFWAPEWYQHKGKVYVYYTARKQSDNISCIGVAV
EECCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEEEECCCCCEEEEEEEE
ADSPTGKFKDHGPVVEFGKEAIDAFILEDKGKLYISWKAYGLDNQPIELLACKLTDDGLR
ECCCCCCCCCCCCHHHHHHHHHEEEEEECCCEEEEEEEEECCCCCCEEEEEEEECCCCCE
LDGKPFSLLRDDERQGMEGQHWFKKDGYYYIIYSVRGCCGPQSDYAVSVARSKKLEGPYE
ECCCCCEEECCHHHCCCCCCCEEECCCEEEEEEEECCCCCCCCCEEEEEEHHCCCCCCHH
KYLGNPILHGSKEVLSIGHGTITTTPDGRMYYLCHAYQPGSGFYQGRQPYLQEVRMGEDH
HHCCCCCCCCCHHHEEECCCEEEECCCCCEEEEEEEECCCCCCCCCCCHHHHHHHCCCCC
WPHFVTGEYASRTQPMPFAESAQVPVFDFSDDFTGATLRPEWSWNYPYTDVKTEIKNGKL
CCCEECCCHHCCCCCCCCCCCCCCEEEECCCCCCCCEECCCCCCCCCCCCCEEEECCCEE
SLSGTPKPGVKTGAALCLRPTSPNYTLETAIVNRNDSWKGITMYGDANNLITCGCAGDRL
EECCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCEEEEEECCCCEEEEECCCCHH
ILKYILEGKEHQLADLPLPASPLYLQMKVTDGTHSTFYWSKDGQAWNEIVGEALSAKETR
HHHHHHCCCCCEEECCCCCCCCEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHH
SLIQWDRISRPGLYQEGDPTAPAVYAYCLLKNE
HHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECC
>Mature Secondary Structure
MRKIFTLFFCAASLATGLAQQESYFTNPVIHGDVADPSIIRIDQTYYITGTSSEWAPYYP
CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEEEEEEEEECCCCCCCCCC
VFTSTDLVNWQQTGHVFDEKPEWTKSSFWAPEWYQHKGKVYVYYTARKQSDNISCIGVAV
EECCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEEEECCCCCEEEEEEEE
ADSPTGKFKDHGPVVEFGKEAIDAFILEDKGKLYISWKAYGLDNQPIELLACKLTDDGLR
ECCCCCCCCCCCCHHHHHHHHHEEEEEECCCEEEEEEEEECCCCCCEEEEEEEECCCCCE
LDGKPFSLLRDDERQGMEGQHWFKKDGYYYIIYSVRGCCGPQSDYAVSVARSKKLEGPYE
ECCCCCEEECCHHHCCCCCCCEEECCCEEEEEEEECCCCCCCCCEEEEEEHHCCCCCCHH
KYLGNPILHGSKEVLSIGHGTITTTPDGRMYYLCHAYQPGSGFYQGRQPYLQEVRMGEDH
HHCCCCCCCCCHHHEEECCCEEEECCCCCEEEEEEEECCCCCCCCCCCHHHHHHHCCCCC
WPHFVTGEYASRTQPMPFAESAQVPVFDFSDDFTGATLRPEWSWNYPYTDVKTEIKNGKL
CCCEECCCHHCCCCCCCCCCCCCCEEEECCCCCCCCEECCCCCCCCCCCCCEEEECCCEE
SLSGTPKPGVKTGAALCLRPTSPNYTLETAIVNRNDSWKGITMYGDANNLITCGCAGDRL
EECCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCEEEEEECCCCEEEEECCCCHH
ILKYILEGKEHQLADLPLPASPLYLQMKVTDGTHSTFYWSKDGQAWNEIVGEALSAKETR
HHHHHHCCCCCEEECCCCCCCCEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHH
SLIQWDRISRPGLYQEGDPTAPAVYAYCLLKNE
HHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1905520 [H]