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The map label for this gene is ymdB [C]

Identifier: 150008598

GI number: 150008598

Start: 2348845

End: 2349372

Strand: Direct

Name: ymdB [C]

Synonym: BDI_1984

Alternate gene names: 150008598

Gene position: 2348845-2349372 (Clockwise)

Preceding gene: 150008593

Following gene: 150008600

Centisome position: 48.82

GC content: 49.62

Gene sequence:

>528_bases
ATGAACGAACGAATAATTGCTATACAAGCAGATATTACGACATTGGATGTAGACGCCATCGTAAATGCCGCGAACAATAG
CTTATTGGGAGGTGGCGGCGTAGACGGTGCCATCCATTGGGCCGCCGGTCCGGAACTCCTTGACGAATGCCGGACTTTAC
AAGGATGCCCGACCGGAGAGGCGAAGATAACGAAAGGTTATCGATTGAAAGCCCGTCATGTCATACACACCGTCGGTCCC
ATCTACCGAAACGGACAACACGGAGAGCCGGAGCTACTGGAAAATTGTTATCGAAACTCCTTGCGATTGGCGAAAGAGAA
CAGACTGAGAACAATCGCTTTCCCATCAATAAGCACCGGCGTATATGGCTATCCTATCGAGGAGGCGGCACAGATAGCGA
TCCGCACGATCGATACCTTCCTAAAAGAGAATCCGGAAATCCAGCAAGTCACGATGTGCTGTTTCTCCGGATACGACAAA
TCGGTTTATACGAAAGCGCTGGAACAAATTACAACTCACGAGCCGTAA

Upstream 100 bases:

>100_bases
CAAAACAACTATTTTAAGTTTGAAACAAAGCAACTTTTTCGCTATATTGCGCACATTTAGAATATATATGAACAGGACCA
ACATACAAATAACTAAAGAT

Downstream 100 bases:

>100_bases
TGTGGAAACACCCTTGCTTGCGTTCGTGCTTGATATAGCAACGATCCGCCCTGCGCAAATCACGAAGCACGGAGGCAAGC
ACCATTTTCAAGCGGTCCTT

Product: histone macro-H2A1-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MNERIIAIQADITTLDVDAIVNAANNSLLGGGGVDGAIHWAAGPELLDECRTLQGCPTGEAKITKGYRLKARHVIHTVGP
IYRNGQHGEPELLENCYRNSLRLAKENRLRTIAFPSISTGVYGYPIEEAAQIAIRTIDTFLKENPEIQQVTMCCFSGYDK
SVYTKALEQITTHEP

Sequences:

>Translated_175_residues
MNERIIAIQADITTLDVDAIVNAANNSLLGGGGVDGAIHWAAGPELLDECRTLQGCPTGEAKITKGYRLKARHVIHTVGP
IYRNGQHGEPELLENCYRNSLRLAKENRLRTIAFPSISTGVYGYPIEEAAQIAIRTIDTFLKENPEIQQVTMCCFSGYDK
SVYTKALEQITTHEP
>Mature_175_residues
MNERIIAIQADITTLDVDAIVNAANNSLLGGGGVDGAIHWAAGPELLDECRTLQGCPTGEAKITKGYRLKARHVIHTVGP
IYRNGQHGEPELLENCYRNSLRLAKENRLRTIAFPSISTGVYGYPIEEAAQIAIRTIDTFLKENPEIQQVTMCCFSGYDK
SVYTKALEQITTHEP

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=174, Percent_Identity=55.7471264367816, Blast_Score=186, Evalue=7e-48,
Organism=Homo sapiens, GI13569840, Length=173, Percent_Identity=54.9132947976879, Blast_Score=185, Evalue=1e-47,
Organism=Homo sapiens, GI207450721, Length=168, Percent_Identity=39.2857142857143, Blast_Score=127, Evalue=6e-30,
Organism=Homo sapiens, GI8923143, Length=168, Percent_Identity=39.2857142857143, Blast_Score=127, Evalue=7e-30,
Organism=Homo sapiens, GI20336746, Length=176, Percent_Identity=29.5454545454545, Blast_Score=88, Evalue=3e-18,
Organism=Homo sapiens, GI154813199, Length=172, Percent_Identity=36.6279069767442, Blast_Score=87, Evalue=5e-18,
Organism=Homo sapiens, GI226371718, Length=142, Percent_Identity=31.6901408450704, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI93141018, Length=179, Percent_Identity=26.8156424581006, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI226371710, Length=142, Percent_Identity=31.6901408450704, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI226371706, Length=142, Percent_Identity=31.6901408450704, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI93141020, Length=179, Percent_Identity=26.8156424581006, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI4758496, Length=179, Percent_Identity=26.8156424581006, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI226371716, Length=142, Percent_Identity=31.6901408450704, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI226371714, Length=142, Percent_Identity=31.6901408450704, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI226371712, Length=142, Percent_Identity=31.6901408450704, Blast_Score=72, Evalue=4e-13,
Organism=Escherichia coli, GI1787283, Length=173, Percent_Identity=52.0231213872832, Blast_Score=175, Evalue=1e-45,
Organism=Caenorhabditis elegans, GI17538214, Length=165, Percent_Identity=47.2727272727273, Blast_Score=139, Evalue=6e-34,
Organism=Drosophila melanogaster, GI24586353, Length=165, Percent_Identity=38.1818181818182, Blast_Score=103, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 19257; Mature: 19257

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNERIIAIQADITTLDVDAIVNAANNSLLGGGGVDGAIHWAAGPELLDECRTLQGCPTGE
CCCEEEEEECCCEEEHHHHHHHHCCCCEECCCCCCCEEEECCCHHHHHHHHHHCCCCCCC
AKITKGYRLKARHVIHTVGPIYRNGQHGEPELLENCYRNSLRLAKENRLRTIAFPSISTG
CEECCCEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
VYGYPIEEAAQIAIRTIDTFLKENPEIQQVTMCCFSGYDKSVYTKALEQITTHEP
CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNERIIAIQADITTLDVDAIVNAANNSLLGGGGVDGAIHWAAGPELLDECRTLQGCPTGE
CCCEEEEEECCCEEEHHHHHHHHCCCCEECCCCCCCEEEECCCHHHHHHHHHHCCCCCCC
AKITKGYRLKARHVIHTVGPIYRNGQHGEPELLENCYRNSLRLAKENRLRTIAFPSISTG
CEECCCEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
VYGYPIEEAAQIAIRTIDTFLKENPEIQQVTMCCFSGYDKSVYTKALEQITTHEP
CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]