Click here to switch to the map view.

The map label for this gene is ykrA [H]

Identifier: 150008395

GI number: 150008395

Start: 2104295

End: 2105071

Strand: Reverse

Name: ykrA [H]

Synonym: BDI_1769

Alternate gene names: 150008395

Gene position: 2105071-2104295 (Counterclockwise)

Preceding gene: 150008398

Following gene: 150008394

Centisome position: 43.75

GC content: 51.99

Gene sequence:

>777_bases
ATGATTAAGGCAGTATTTTTTGACATTGACGGTACGTTGGTAAGTTTCAAGACGCATAAACTACCGGACTCCACGGTCCG
GGCCTTGGACCTGTTGCGAGAAAAGGGAATCAAGGTTTTCATCGCTACCGGCCGCCAGTTGCAATCTATCAATAACCTCG
GGACGCAAGAGTTCGATGGCTATGTTACCTTGAACGGAGGATATTGCTTGGCCGGAAAAGATAAGGTTATCTATAAACAT
AATATCCCGGCGGGGGATATAGAGGCGTTGATCCGCTATCAAGAGAATGAGGAGGCGTTCCCGTGCGCCTTGGTGGAGGA
AGATGGGATTTACCAGAACTACGTGGATGATTCTGTGCGACAGCTTTACGACATGCTAGACTTCCCTCATCCTCCCTTGC
GTCCTTTGCGTGGCAACGGGGGTAAGGAAGTATACCAGCTGATAGCCTTTTTCTCTCCCGGCCATGAAGAACGTATCATG
TCCGTCTTGCCGCATTGCGAGGCTACTCGCTGGAACCCGCTATTTGCGGATGTCGTGCCGCGGGGGAGCAGTAAGGCGGT
AGGGATCGATAAGATCATCGAGTATTACGGGATCTCGCTCCACGAGACGATGGCTTTTGGCGATGGAGGCAACGATATGG
CCATGCTTCGCCACGCCGGGATCGGGGTAGCCATGGGTAACGCCGGCGACGAGGTGAAAGAGGCGGCGGATTACGTGACC
GACTCCGTAGATGACGATGGTGTCATGAACGCTTTAAGACATTTCGATGTTATATGA

Upstream 100 bases:

>100_bases
CCATAAAAAACTATATCTATTATTTGATGAAGGAAATGAAAATACAAATGTAACAAATAAAGTGTATCTTTGTCATTAAA
AGAAGATAATAGGTATAAGT

Downstream 100 bases:

>100_bases
ATAAACAGTTTAATAACGCTAAATCACAAACGCTATGATTGATGAATTGGTAAGCTATAATCGTGAGTTCGTAAAGAACA
AGGGGTATGAGAAGTATATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MIKAVFFDIDGTLVSFKTHKLPDSTVRALDLLREKGIKVFIATGRQLQSINNLGTQEFDGYVTLNGGYCLAGKDKVIYKH
NIPAGDIEALIRYQENEEAFPCALVEEDGIYQNYVDDSVRQLYDMLDFPHPPLRPLRGNGGKEVYQLIAFFSPGHEERIM
SVLPHCEATRWNPLFADVVPRGSSKAVGIDKIIEYYGISLHETMAFGDGGNDMAMLRHAGIGVAMGNAGDEVKEAADYVT
DSVDDDGVMNALRHFDVI

Sequences:

>Translated_258_residues
MIKAVFFDIDGTLVSFKTHKLPDSTVRALDLLREKGIKVFIATGRQLQSINNLGTQEFDGYVTLNGGYCLAGKDKVIYKH
NIPAGDIEALIRYQENEEAFPCALVEEDGIYQNYVDDSVRQLYDMLDFPHPPLRPLRGNGGKEVYQLIAFFSPGHEERIM
SVLPHCEATRWNPLFADVVPRGSSKAVGIDKIIEYYGISLHETMAFGDGGNDMAMLRHAGIGVAMGNAGDEVKEAADYVT
DSVDDDGVMNALRHFDVI
>Mature_258_residues
MIKAVFFDIDGTLVSFKTHKLPDSTVRALDLLREKGIKVFIATGRQLQSINNLGTQEFDGYVTLNGGYCLAGKDKVIYKH
NIPAGDIEALIRYQENEEAFPCALVEEDGIYQNYVDDSVRQLYDMLDFPHPPLRPLRGNGGKEVYQLIAFFSPGHEERIM
SVLPHCEATRWNPLFADVVPRGSSKAVGIDKIIEYYGISLHETMAFGDGGNDMAMLRHAGIGVAMGNAGDEVKEAADYVT
DSVDDDGVMNALRHFDVI

Specific function: Unknown

COG id: COG0561

COG function: function code R; Predicted hydrolases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. Cof family [H]

Homologues:

Organism=Escherichia coli, GI87081741, Length=251, Percent_Identity=28.6852589641434, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI2367265, Length=266, Percent_Identity=24.0601503759398, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1787043, Length=269, Percent_Identity=25.6505576208178, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI48994981, Length=249, Percent_Identity=27.3092369477912, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI87081790, Length=76, Percent_Identity=42.1052631578947, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006379
- InterPro:   IPR000150 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: NA

Molecular weight: Translated: 28592; Mature: 28592

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS01228 COF_1 ; PS01229 COF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKAVFFDIDGTLVSFKTHKLPDSTVRALDLLREKGIKVFIATGRQLQSINNLGTQEFDG
CCEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCCC
YVTLNGGYCLAGKDKVIYKHNIPAGDIEALIRYQENEEAFPCALVEEDGIYQNYVDDSVR
EEEECCCEEECCCCEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHH
QLYDMLDFPHPPLRPLRGNGGKEVYQLIAFFSPGHEERIMSVLPHCEATRWNPLFADVVP
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHCC
RGSSKAVGIDKIIEYYGISLHETMAFGDGGNDMAMLRHAGIGVAMGNAGDEVKEAADYVT
CCCCCCCCHHHHHHHHCCCHHHHEEECCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHH
DSVDDDGVMNALRHFDVI
CCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MIKAVFFDIDGTLVSFKTHKLPDSTVRALDLLREKGIKVFIATGRQLQSINNLGTQEFDG
CCEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCCC
YVTLNGGYCLAGKDKVIYKHNIPAGDIEALIRYQENEEAFPCALVEEDGIYQNYVDDSVR
EEEECCCEEECCCCEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHH
QLYDMLDFPHPPLRPLRGNGGKEVYQLIAFFSPGHEERIMSVLPHCEATRWNPLFADVVP
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHCC
RGSSKAVGIDKIIEYYGISLHETMAFGDGGNDMAMLRHAGIGVAMGNAGDEVKEAADYVT
CCCCCCCCHHHHHHHHCCCHHHHEEECCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHH
DSVDDDGVMNALRHFDVI
CCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]