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The map label for this gene is ykcC [H]

Identifier: 150008282

GI number: 150008282

Start: 1951645

End: 1952577

Strand: Reverse

Name: ykcC [H]

Synonym: BDI_1651

Alternate gene names: 150008282

Gene position: 1952577-1951645 (Counterclockwise)

Preceding gene: 150008283

Following gene: 150008281

Centisome position: 40.58

GC content: 47.7

Gene sequence:

>933_bases
ATGAAGAAGTTAGCGGTTATAGTCCCGTGTTACAACGAGGAAGCCGTGATCGAGGAATCGTATCGGCGTACGAAAGAGGT
CTTGGTAAAGTTGCCGAACCCTACGGAGATTATCTATATAAATGATGGTAGTCAGGATAAGACACGTTCTTTGTTGGATC
ATATAGCCGCTACCGATCCTCATGTGAAGGTGATTCACTTCTCCCGGAATTTCGGTCATCAACCGGCGGTAACGGCGGGT
ATCAATAACTGTGACGCTGATTTGGCGATTATCATCGACGCCGATATGCAGGATCCGCCGGAATTGATTCCGGATCTGCT
GGAAGTGCAGGAGAGAGAGAATGCTAACGTGGTTTATTGCGTCCGTAAGTCACGGGAAGGGGAGAGTCTTTTCAAGCTGT
TCACCTCCAAGGCTTTTTACCGGGTGATGAATTATATGAGCGAGGTCCATTTCCCGCTGGATACGGGAGATTTCCGTTTA
GTGGACCGGAAGGTGATGAATGAGTTCGACCGTTTTAAGGAACGGGGAAAATATATCCGTGGCTTGATAAGCTGGGTGGG
CTTCCACCAAGTGCCGTTTTATTATGAGCGTGAGGCGCGTATCGCCGGCGAGACGAAATATCCGATTAGTAAGATGCTGA
AATTCGCGTCGACGGCAATGCTTTATTTCTCGAAGAAGCCGTTGCGTTTGGCGACGAGTCTCGGGTTTATATCCGTATTG
GTCGGTATAATCTTGGCGGTTTGGTTCACGTTGGGCAAGATCTATGGTTTTAGTAACGCCGAGGTTGGCTGGACTTCTAT
CATGACTTCCATTATCTTCTTTGGAGGTGTACAGTTATTGACGGTCGGCGTGTTAGGGCAATATGTCGGTATCCTCTTTG
ACGAGATCAAGGCCCGTCCCGAATACATTATTGACGAGAAGAAAAACTATTAA

Upstream 100 bases:

>100_bases
TTACGATCGATCATTACTACAACCACTTGATTGGAATGGCTTTCTATACGGTGATTAATTTTTTAGTAAATAAGTTTTAT
ACCTTTAAAGCTTAAAAGGC

Downstream 100 bases:

>100_bases
AAAACATCGGAGGCGAAATAAGCCGTTTCTCTATGATCTGAATTCTGTTCCATGATAAATGTCTTTTCATGATATACTCG
TGAATGTAACATAAACAATT

Product: glycosyl transferase family protein

Products: GDP; dolichyl D-mannosyl phosphate

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MKKLAVIVPCYNEEAVIEESYRRTKEVLVKLPNPTEIIYINDGSQDKTRSLLDHIAATDPHVKVIHFSRNFGHQPAVTAG
INNCDADLAIIIDADMQDPPELIPDLLEVQERENANVVYCVRKSREGESLFKLFTSKAFYRVMNYMSEVHFPLDTGDFRL
VDRKVMNEFDRFKERGKYIRGLISWVGFHQVPFYYEREARIAGETKYPISKMLKFASTAMLYFSKKPLRLATSLGFISVL
VGIILAVWFTLGKIYGFSNAEVGWTSIMTSIIFFGGVQLLTVGVLGQYVGILFDEIKARPEYIIDEKKNY

Sequences:

>Translated_310_residues
MKKLAVIVPCYNEEAVIEESYRRTKEVLVKLPNPTEIIYINDGSQDKTRSLLDHIAATDPHVKVIHFSRNFGHQPAVTAG
INNCDADLAIIIDADMQDPPELIPDLLEVQERENANVVYCVRKSREGESLFKLFTSKAFYRVMNYMSEVHFPLDTGDFRL
VDRKVMNEFDRFKERGKYIRGLISWVGFHQVPFYYEREARIAGETKYPISKMLKFASTAMLYFSKKPLRLATSLGFISVL
VGIILAVWFTLGKIYGFSNAEVGWTSIMTSIIFFGGVQLLTVGVLGQYVGILFDEIKARPEYIIDEKKNY
>Mature_310_residues
MKKLAVIVPCYNEEAVIEESYRRTKEVLVKLPNPTEIIYINDGSQDKTRSLLDHIAATDPHVKVIHFSRNFGHQPAVTAG
INNCDADLAIIIDADMQDPPELIPDLLEVQERENANVVYCVRKSREGESLFKLFTSKAFYRVMNYMSEVHFPLDTGDFRL
VDRKVMNEFDRFKERGKYIRGLISWVGFHQVPFYYEREARIAGETKYPISKMLKFASTAMLYFSKKPLRLATSLGFISVL
VGIILAVWFTLGKIYGFSNAEVGWTSIMTSIIFFGGVQLLTVGVLGQYVGILFDEIKARPEYIIDEKKNY

Specific function: Involved In O Antigen Modification. Catalyzes The Transfer Of The Glucose Residue From Udp-Glucose To A Lipid Carrier (By Similarity). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family. GtrB subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788692, Length=306, Percent_Identity=37.9084967320261, Blast_Score=218, Evalue=6e-58,
Organism=Escherichia coli, GI1788588, Length=312, Percent_Identity=28.8461538461538, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1787259, Length=93, Percent_Identity=37.6344086021505, Blast_Score=76, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.4.1.83

Molecular weight: Translated: 35466; Mature: 35466

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLAVIVPCYNEEAVIEESYRRTKEVLVKLPNPTEIIYINDGSQDKTRSLLDHIAATDP
CCCEEEEEECCCCHHHHHHHHHHHHHHEEECCCCCEEEEEECCCCHHHHHHHHHHHCCCC
HVKVIHFSRNFGHQPAVTAGINNCDADLAIIIDADMQDPPELIPDLLEVQERENANVVYC
CEEEEEEECCCCCCCCEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE
VRKSREGESLFKLFTSKAFYRVMNYMSEVHFPLDTGDFRLVDRKVMNEFDRFKERGKYIR
EECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GLISWVGFHQVPFYYEREARIAGETKYPISKMLKFASTAMLYFSKKPLRLATSLGFISVL
HHHHHHHHHCCCCEECCCHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
VGIILAVWFTLGKIYGFSNAEVGWTSIMTSIIFFGGVQLLTVGVLGQYVGILFDEIKARP
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
EYIIDEKKNY
CCCCCCCCCC
>Mature Secondary Structure
MKKLAVIVPCYNEEAVIEESYRRTKEVLVKLPNPTEIIYINDGSQDKTRSLLDHIAATDP
CCCEEEEEECCCCHHHHHHHHHHHHHHEEECCCCCEEEEEECCCCHHHHHHHHHHHCCCC
HVKVIHFSRNFGHQPAVTAGINNCDADLAIIIDADMQDPPELIPDLLEVQERENANVVYC
CEEEEEEECCCCCCCCEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE
VRKSREGESLFKLFTSKAFYRVMNYMSEVHFPLDTGDFRLVDRKVMNEFDRFKERGKYIR
EECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GLISWVGFHQVPFYYEREARIAGETKYPISKMLKFASTAMLYFSKKPLRLATSLGFISVL
HHHHHHHHHCCCCEECCCHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
VGIILAVWFTLGKIYGFSNAEVGWTSIMTSIIFFGGVQLLTVGVLGQYVGILFDEIKARP
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
EYIIDEKKNY
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: GDPmannose; dolichyl phosphate

Specific reaction: GDP-mannose + dolichyl phosphate = GDP + dolichyl D-mannosyl phosphate

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]