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The map label for this gene is 150008271

Identifier: 150008271

GI number: 150008271

Start: 1938265

End: 1938768

Strand: Reverse

Name: 150008271

Synonym: BDI_1640

Alternate gene names: NA

Gene position: 1938768-1938265 (Counterclockwise)

Preceding gene: 150008272

Following gene: 150008270

Centisome position: 40.3

GC content: 47.02

Gene sequence:

>504_bases
ATGGAACAAGAACAGTTTAAAAAAGAGATATTGCCTTTGCGGGAGAAACTATTCCTTTATTATGCGAGAAGGCTGCTGGA
TAACCCGGAGGATGCCGAGGATGTCATGCAGGAAGTCTTTTTGAAGCTGTGGTATATGCGTGGCGAGTTGGACTATTATA
ATAATGTAATGGCCTTGTCCGTACAAATCACCAAGCACCTTTGCCTAAACCGGATGAAAGTCCGTGAACGCACGGAAGGT
GAGGCGGGCGAACAATTCTTTATCTGCGATGCTTCCACGCCTTATACCCAGCTGGAACAAAAAGACAGTTTGGAGCATGT
AATGCGGCTTATCAATAAACTACCGGGACTTCAACAGACCATTCTTCGCATGAAACACGTGGATGGTTTCGAGGTGGAGG
AAATCGCCGGGTTGACCGGAAGTACCCCCGAGGCGGTACGTATGAATCTTTCCCGTGCCCGTAAACGGGTGAGAGAGCAA
TTCTTTAAAATGCAGACGTTATGA

Upstream 100 bases:

>100_bases
CATAAGGGTGGCACGACTATAATACTAGAATGACAAAGACCTTGAATTTATTTTTTCCAGCCATGTTACGTTTTCTTTTC
TCGATTGTCATTAAGATAGA

Downstream 100 bases:

>100_bases
AAACAGAGGAATACAGGTCTATAGAGGATTTATTAGACCGCTTCTTCGAGGGTCAGACCTCGAACGAGGAGGAGCGAGTG
TTGTATGAGTTTTTCGCCCG

Product: putative RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: Sigma-70 Region 4 Family; RNA Polymerase Sigma-70 Factor ECF Subfamily; Extracytoplasmic Function AlteRNAtive Sigma Factor; ECF Family RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase Factor Sigma-54 SigL

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MEQEQFKKEILPLREKLFLYYARRLLDNPEDAEDVMQEVFLKLWYMRGELDYYNNVMALSVQITKHLCLNRMKVRERTEG
EAGEQFFICDASTPYTQLEQKDSLEHVMRLINKLPGLQQTILRMKHVDGFEVEEIAGLTGSTPEAVRMNLSRARKRVREQ
FFKMQTL

Sequences:

>Translated_167_residues
MEQEQFKKEILPLREKLFLYYARRLLDNPEDAEDVMQEVFLKLWYMRGELDYYNNVMALSVQITKHLCLNRMKVRERTEG
EAGEQFFICDASTPYTQLEQKDSLEHVMRLINKLPGLQQTILRMKHVDGFEVEEIAGLTGSTPEAVRMNLSRARKRVREQ
FFKMQTL
>Mature_167_residues
MEQEQFKKEILPLREKLFLYYARRLLDNPEDAEDVMQEVFLKLWYMRGELDYYNNVMALSVQITKHLCLNRMKVRERTEG
EAGEQFFICDASTPYTQLEQKDSLEHVMRLINKLPGLQQTILRMKHVDGFEVEEIAGLTGSTPEAVRMNLSRARKRVREQ
FFKMQTL

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19853; Mature: 19853

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQEQFKKEILPLREKLFLYYARRLLDNPEDAEDVMQEVFLKLWYMRGELDYYNNVMALS
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCHHHH
VQITKHLCLNRMKVRERTEGEAGEQFFICDASTPYTQLEQKDSLEHVMRLINKLPGLQQT
HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHH
ILRMKHVDGFEVEEIAGLTGSTPEAVRMNLSRARKRVREQFFKMQTL
HHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEQEQFKKEILPLREKLFLYYARRLLDNPEDAEDVMQEVFLKLWYMRGELDYYNNVMALS
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCHHHH
VQITKHLCLNRMKVRERTEGEAGEQFFICDASTPYTQLEQKDSLEHVMRLINKLPGLQQT
HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHH
ILRMKHVDGFEVEEIAGLTGSTPEAVRMNLSRARKRVREQFFKMQTL
HHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA