| Definition | Parabacteroides distasonis ATCC 8503 chromosome, complete genome. |
|---|---|
| Accession | NC_009615 |
| Length | 4,811,379 |
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The map label for this gene is nutA [H]
Identifier: 150008075
GI number: 150008075
Start: 1671866
End: 1673449
Strand: Direct
Name: nutA [H]
Synonym: BDI_1439
Alternate gene names: 150008075
Gene position: 1671866-1673449 (Clockwise)
Preceding gene: 150008074
Following gene: 150008076
Centisome position: 34.75
GC content: 51.83
Gene sequence:
>1584_bases ATGGGACTGAAAAAACAATTCGTATCAGCGATTTTGCTAGGCAGCGCGCTAACCGCTCCCCTATTCGCACAAGATATCGC CACCCCGTCCAGCTCGATAGACACTTTAGCCATTTTCTCATTCAACGATTTCCATGGGGCTTTCGCCTCCGACGGGATCA CGCCGGGAGCCGCCCGGTTGGTACAAATGACACAAAACGAGAAGCAACGCTATCCGCATTCCATCGTTGTCTCAGGCGGA GATAATTTCAGCGGAAGCTATTTCTCCAAGATCACGAAAGGCGAGCCTATCAAAGAGATGTACGAGGCGATGGACGTGGA AATGTCCGCCATCGGTAACCACGAGTTCGACTGGGGGCTTCCTTATCTAGTGGACACCGCCGCCTTGAATATCCCCCATG TGGCCGCCAATATCACCGAAGAGAAGAGATATACTCACCCCGACTGGTTGAGTCCCTACCGTATCGTAGAGCGTAAGTTG AAAGATGGCTCCTCCCTACGTATAGCCTTCATCGGACTGACCACGACGGACACCTACGTCAAGACCAAGCCGGAGAACCT GAAAGGGCTTCAGTTCACGCATCCGCTGGGAGCAGCCTGCATACAAACCGTCTACCAGTTAAAGAAAGAGGACCAGATCG ATATGATTATCCTCTTGATACACATCGGCACGGATATGAAAATGCCTTACCGCATCACCGAGGAGAACGCCCAAGGACTG CCGTTCATCGATAAGGTAGACGCCATCATATCCGCCCACTCGCATGAGCTGGTGCTCGATAAGATCAATAACATTCCCAT CATCCAAGCCGGCGTAAACGGTACCCATATCGGGAAACTGCTGTTCCAGATACAGGATTTCAACGGACACCGGGATATCT CTTTCATCCAAGGGGATACCGTGCGTGTAGCCTGCGAGGAGAACCCGGAGATGCGAGAGGCCGTGGAGAAGATCATGGAT AAATATCGGCTGAACGAGAAACTTGCCACGGCAAAAGAGGCCTTGATCCACGACCGTACCATCAATAAGTTCGACTATAC GCCTATCGGGGCGTTGGTCACGGCCGCTTACGCCCAGCGTTTCCAAAAAGAGATGCCCGCTTACAAGGATCAGCCGGTGA TCGGCGTAAACCATTACGGAGGTATACGTGCAGCCCTCCCGAAAGGAGATATCACCCGACTGCGTGCCGGCAACATCTTG CCTTTCGGCTCCGCTATCGTTGCCTATCGTTTCGACGGCAAGCGGTTGAAGAAGCTATTGGAGGATGGACGGAAGAATCC GAACGGTTTCCTTCAATCCTCCGACCTCACGCTTACCCTAAGCGGAAATAAGATCGAGAAAATAGTCTATACGAGAGACG GGCAAAAGACCGAGATCGAGGACAATACCCCTTGCGTGGTGACCCTAGACGCTTTCATCACCGATGGCGGAGACGGGTAC GACGCCTCTTTATTCAAGGGCTACGAGATCCCGGAATTCGACAATTTAGGTATCATATCGACTGACGCTTTCATGGACTA CCTAAAGGGCTTCAAGAAACCCATCACGGTAGAATCCACGCATATGCCGGTTATTTCAAAGTAA
Upstream 100 bases:
>100_bases CGAAGGTTTAAAACGATCAAAAAGAATTCGACGAATCGGGCGTTTTCCTCGGTGAATCCCGTTATTTTTCCTACTTTTGT CCCTATTAATACATACAACC
Downstream 100 bases:
>100_bases AGCCGTATCTTTGCGGAGAAGAAGAAAGAAGTTAGCAATACATGAACAGCTATATGATCCTTTTTATTATCGCTGCCTAT TTCGCCGTCTTGCTGCTGAT
Product: 2',3'-cyclic nucleotide 2'-phosphodiesterase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 527; Mature: 526
Protein sequence:
>527_residues MGLKKQFVSAILLGSALTAPLFAQDIATPSSSIDTLAIFSFNDFHGAFASDGITPGAARLVQMTQNEKQRYPHSIVVSGG DNFSGSYFSKITKGEPIKEMYEAMDVEMSAIGNHEFDWGLPYLVDTAALNIPHVAANITEEKRYTHPDWLSPYRIVERKL KDGSSLRIAFIGLTTTDTYVKTKPENLKGLQFTHPLGAACIQTVYQLKKEDQIDMIILLIHIGTDMKMPYRITEENAQGL PFIDKVDAIISAHSHELVLDKINNIPIIQAGVNGTHIGKLLFQIQDFNGHRDISFIQGDTVRVACEENPEMREAVEKIMD KYRLNEKLATAKEALIHDRTINKFDYTPIGALVTAAYAQRFQKEMPAYKDQPVIGVNHYGGIRAALPKGDITRLRAGNIL PFGSAIVAYRFDGKRLKKLLEDGRKNPNGFLQSSDLTLTLSGNKIEKIVYTRDGQKTEIEDNTPCVVTLDAFITDGGDGY DASLFKGYEIPEFDNLGIISTDAFMDYLKGFKKPITVESTHMPVISK
Sequences:
>Translated_527_residues MGLKKQFVSAILLGSALTAPLFAQDIATPSSSIDTLAIFSFNDFHGAFASDGITPGAARLVQMTQNEKQRYPHSIVVSGG DNFSGSYFSKITKGEPIKEMYEAMDVEMSAIGNHEFDWGLPYLVDTAALNIPHVAANITEEKRYTHPDWLSPYRIVERKL KDGSSLRIAFIGLTTTDTYVKTKPENLKGLQFTHPLGAACIQTVYQLKKEDQIDMIILLIHIGTDMKMPYRITEENAQGL PFIDKVDAIISAHSHELVLDKINNIPIIQAGVNGTHIGKLLFQIQDFNGHRDISFIQGDTVRVACEENPEMREAVEKIMD KYRLNEKLATAKEALIHDRTINKFDYTPIGALVTAAYAQRFQKEMPAYKDQPVIGVNHYGGIRAALPKGDITRLRAGNIL PFGSAIVAYRFDGKRLKKLLEDGRKNPNGFLQSSDLTLTLSGNKIEKIVYTRDGQKTEIEDNTPCVVTLDAFITDGGDGY DASLFKGYEIPEFDNLGIISTDAFMDYLKGFKKPITVESTHMPVISK >Mature_526_residues GLKKQFVSAILLGSALTAPLFAQDIATPSSSIDTLAIFSFNDFHGAFASDGITPGAARLVQMTQNEKQRYPHSIVVSGGD NFSGSYFSKITKGEPIKEMYEAMDVEMSAIGNHEFDWGLPYLVDTAALNIPHVAANITEEKRYTHPDWLSPYRIVERKLK DGSSLRIAFIGLTTTDTYVKTKPENLKGLQFTHPLGAACIQTVYQLKKEDQIDMIILLIHIGTDMKMPYRITEENAQGLP FIDKVDAIISAHSHELVLDKINNIPIIQAGVNGTHIGKLLFQIQDFNGHRDISFIQGDTVRVACEENPEMREAVEKIMDK YRLNEKLATAKEALIHDRTINKFDYTPIGALVTAAYAQRFQKEMPAYKDQPVIGVNHYGGIRAALPKGDITRLRAGNILP FGSAIVAYRFDGKRLKKLLEDGRKNPNGFLQSSDLTLTLSGNKIEKIVYTRDGQKTEIEDNTPCVVTLDAFITDGGDGYD ASLFKGYEIPEFDNLGIISTDAFMDYLKGFKKPITVESTHMPVISK
Specific function: Degradation of extracellular 5'-nucleotides for nutritional needs [H]
COG id: COG0737
COG function: function code F; 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases
Gene ontology:
Cell location: Cell outer membrane; Lipid-anchor [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 5'-nucleotidase family [H]
Homologues:
Organism=Escherichia coli, GI1786687, Length=530, Percent_Identity=24.5283018867925, Blast_Score=86, Evalue=8e-18, Organism=Escherichia coli, GI1790658, Length=427, Percent_Identity=24.3559718969555, Blast_Score=79, Evalue=1e-15, Organism=Drosophila melanogaster, GI221329836, Length=551, Percent_Identity=22.1415607985481, Blast_Score=74, Evalue=4e-13,
Paralogues:
None
Copy number: 60 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008334 - InterPro: IPR006146 - InterPro: IPR006179 - InterPro: IPR004843 [H]
Pfam domain/function: PF02872 5_nucleotid_C; PF00149 Metallophos [H]
EC number: =3.1.3.5 [H]
Molecular weight: Translated: 58564; Mature: 58432
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: PS00761 SPASE_I_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLKKQFVSAILLGSALTAPLFAQDIATPSSSIDTLAIFSFNDFHGAFASDGITPGAARL CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHCCCCCHHHHHH VQMTQNEKQRYPHSIVVSGGDNFSGSYFSKITKGEPIKEMYEAMDVEMSAIGNHEFDWGL HHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCHHHHHHHHCCCHHHCCCCCCCCCC PYLVDTAALNIPHVAANITEEKRYTHPDWLSPYRIVERKLKDGSSLRIAFIGLTTTDTYV CHHHHHHHCCCCHHHHCCCHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEEEECCCCEE KTKPENLKGLQFTHPLGAACIQTVYQLKKEDQIDMIILLIHIGTDMKMPYRITEENAQGL EECCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEECCCCCCC PFIDKVDAIISAHSHELVLDKINNIPIIQAGVNGTHIGKLLFQIQDFNGHRDISFIQGDT CHHHHHHHHHHCCCCHHHEECCCCCEEEEECCCCHHHEEEEEEEECCCCCCCEEEECCCE VRVACEENPEMREAVEKIMDKYRLNEKLATAKEALIHDRTINKFDYTPIGALVTAAYAQR EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH FQKEMPAYKDQPVIGVNHYGGIRAALPKGDITRLRAGNILPFGSAIVAYRFDGKRLKKLL HHHHCCCCCCCCEEEECCCCCEEEECCCCCCEEEECCCCCCCCCEEEEEEECHHHHHHHH EDGRKNPNGFLQSSDLTLTLSGNKIEKIVYTRDGQKTEIEDNTPCVVTLDAFITDGGDGY HHCCCCCCCCEECCCEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEEEEEEEECCCCCC DASLFKGYEIPEFDNLGIISTDAFMDYLKGFKKPITVESTHMPVISK CCHHHCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCEEECCCCCCCCC >Mature Secondary Structure GLKKQFVSAILLGSALTAPLFAQDIATPSSSIDTLAIFSFNDFHGAFASDGITPGAARL CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHCCCCCHHHHHH VQMTQNEKQRYPHSIVVSGGDNFSGSYFSKITKGEPIKEMYEAMDVEMSAIGNHEFDWGL HHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCHHHHHHHHCCCHHHCCCCCCCCCC PYLVDTAALNIPHVAANITEEKRYTHPDWLSPYRIVERKLKDGSSLRIAFIGLTTTDTYV CHHHHHHHCCCCHHHHCCCHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEEEECCCCEE KTKPENLKGLQFTHPLGAACIQTVYQLKKEDQIDMIILLIHIGTDMKMPYRITEENAQGL EECCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEECCCCCCC PFIDKVDAIISAHSHELVLDKINNIPIIQAGVNGTHIGKLLFQIQDFNGHRDISFIQGDT CHHHHHHHHHHCCCCHHHEECCCCCEEEEECCCCHHHEEEEEEEECCCCCCCEEEECCCE VRVACEENPEMREAVEKIMDKYRLNEKLATAKEALIHDRTINKFDYTPIGALVTAAYAQR EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH FQKEMPAYKDQPVIGVNHYGGIRAALPKGDITRLRAGNILPFGSAIVAYRFDGKRLKKLL HHHHCCCCCCCCEEEECCCCCEEEECCCCCCEEEECCCCCCCCCEEEEEEECHHHHHHHH EDGRKNPNGFLQSSDLTLTLSGNKIEKIVYTRDGQKTEIEDNTPCVVTLDAFITDGGDGY HHCCCCCCCCEECCCEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEEEEEEEECCCCCC DASLFKGYEIPEFDNLGIISTDAFMDYLKGFKKPITVESTHMPVISK CCHHHCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]