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The map label for this gene is ypdC [C]

Identifier: 150008013

GI number: 150008013

Start: 1596150

End: 1596986

Strand: Direct

Name: ypdC [C]

Synonym: BDI_1376

Alternate gene names: 150008013

Gene position: 1596150-1596986 (Clockwise)

Preceding gene: 150008012

Following gene: 150008014

Centisome position: 33.17

GC content: 42.89

Gene sequence:

>837_bases
ATGAACGCAAACTTACCACAATTAGATTTGCCCCGGGATTATGTCGTAGGAAACGACATTACCGAGGCAATCTTAAACTT
TTACAAGCAGACTTGCCGGTTAAAAGCAGGTATTTTCGTGTTATGCGTTGAAGGAAATTTACGGGCTTCCATCAACTTGA
CGGAGTACACGTTGAAACCGAATGATTTCATCACCTTGATGCCGGGAAGCATTATTCAGTTCTGTGAGCAGAAAGAGAGT
TTCCGCCTTTCCTTTATAGGATTCTCATCCGAGTTCATGGACTGCGTGAACATGATAAAGTCTACGATGAGCGCCTTACC
TACTATCTACGAGAATCCGATCATATCACTGAGTGAGGACCGGGCGGACTTCATTAACGATTATTTCCATTTGCTAGAGC
GGGTACAAGCGAAAGAGAAATCCATAAACAGGGAGATGGTGAAACATATCCTGCTTACCATGATCCATGGGATCAGTGAT
TTGTATCAAGGAAAATCATGGCCTAACAAGATAACGACCCGTAGCGACGAGATCCACAAGAAATTCATCCAACTGGTGAT
GAAAAATTATACCTCAAAGCGACAAACGGCTTTTTACGCCAGCCAACTAAGTATTTCTCCCCAGCATCTCTGCATGATCA
TCAAGCAAAAGACCGGACGTTCCGTATCCGATATCATAGCCGATATGATAATCATGGACGCAAAATCGCAATTGATGGCT
ACGGACTTGACTATCCAAGAGATATCTTACTCCTTGAACTTCCCGAATGTATCCTTTTTCGGTAAGTACTTTAAACGGTA
CGTAGGCGTATCTCCACAGAAGTTCAGAAACAGTTAA

Upstream 100 bases:

>100_bases
AATAAGTCTGATTCAAGGATTAATTGGTCTATTTTTAAATTATCCAGTAAGTCAACACCACTTTTATTATTTTTGTGTTC
AATCATTAATAAATTAACGG

Downstream 100 bases:

>100_bases
GATAAAATTTAAATGTAACAGAAAAAAAATATCACTTTTTGCTTGTAGTTTCCAAAAAAGCGTTACTTTTGCTGCGTATT
TAAAAACAAACAGACAATGA

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; AraC Family Transcriptional Regulator; AraC-Type Transcription Regulator; Transcriptional Regulator AraC Family Protein; Transcription Regulator; AraC/XylS Family Transcriptional Regulator; AraC-Family Regulatory Protein; Transcription Regulator AraC-Type; Helix-Turn-Helix Domain-Containing Protein; Bacterial Regulatory Helix-Turn-Helix Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; AraC-Type Transcriptional Regulator; AraC-Family Transcriptional Regulator; Phosphomethylpyrimidine Kinase

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MNANLPQLDLPRDYVVGNDITEAILNFYKQTCRLKAGIFVLCVEGNLRASINLTEYTLKPNDFITLMPGSIIQFCEQKES
FRLSFIGFSSEFMDCVNMIKSTMSALPTIYENPIISLSEDRADFINDYFHLLERVQAKEKSINREMVKHILLTMIHGISD
LYQGKSWPNKITTRSDEIHKKFIQLVMKNYTSKRQTAFYASQLSISPQHLCMIIKQKTGRSVSDIIADMIIMDAKSQLMA
TDLTIQEISYSLNFPNVSFFGKYFKRYVGVSPQKFRNS

Sequences:

>Translated_278_residues
MNANLPQLDLPRDYVVGNDITEAILNFYKQTCRLKAGIFVLCVEGNLRASINLTEYTLKPNDFITLMPGSIIQFCEQKES
FRLSFIGFSSEFMDCVNMIKSTMSALPTIYENPIISLSEDRADFINDYFHLLERVQAKEKSINREMVKHILLTMIHGISD
LYQGKSWPNKITTRSDEIHKKFIQLVMKNYTSKRQTAFYASQLSISPQHLCMIIKQKTGRSVSDIIADMIIMDAKSQLMA
TDLTIQEISYSLNFPNVSFFGKYFKRYVGVSPQKFRNS
>Mature_278_residues
MNANLPQLDLPRDYVVGNDITEAILNFYKQTCRLKAGIFVLCVEGNLRASINLTEYTLKPNDFITLMPGSIIQFCEQKES
FRLSFIGFSSEFMDCVNMIKSTMSALPTIYENPIISLSEDRADFINDYFHLLERVQAKEKSINREMVKHILLTMIHGISD
LYQGKSWPNKITTRSDEIHKKFIQLVMKNYTSKRQTAFYASQLSISPQHLCMIIKQKTGRSVSDIIADMIIMDAKSQLMA
TDLTIQEISYSLNFPNVSFFGKYFKRYVGVSPQKFRNS

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31987; Mature: 31987

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNANLPQLDLPRDYVVGNDITEAILNFYKQTCRLKAGIFVLCVEGNLRASINLTEYTLKP
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEEEECC
NDFITLMPGSIIQFCEQKESFRLSFIGFSSEFMDCVNMIKSTMSALPTIYENPIISLSED
CCEEEECCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCHHHCCCCEEECCH
RADFINDYFHLLERVQAKEKSINREMVKHILLTMIHGISDLYQGKSWPNKITTRSDEIHK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
KFIQLVMKNYTSKRQTAFYASQLSISPQHLCMIIKQKTGRSVSDIIADMIIMDAKSQLMA
HHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
TDLTIQEISYSLNFPNVSFFGKYFKRYVGVSPQKFRNS
HCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHCCC
>Mature Secondary Structure
MNANLPQLDLPRDYVVGNDITEAILNFYKQTCRLKAGIFVLCVEGNLRASINLTEYTLKP
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEEEECC
NDFITLMPGSIIQFCEQKESFRLSFIGFSSEFMDCVNMIKSTMSALPTIYENPIISLSED
CCEEEECCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCHHHCCCCEEECCH
RADFINDYFHLLERVQAKEKSINREMVKHILLTMIHGISDLYQGKSWPNKITTRSDEIHK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
KFIQLVMKNYTSKRQTAFYASQLSISPQHLCMIIKQKTGRSVSDIIADMIIMDAKSQLMA
HHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
TDLTIQEISYSLNFPNVSFFGKYFKRYVGVSPQKFRNS
HCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA