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The map label for this gene is xynD [H]

Identifier: 150007977

GI number: 150007977

Start: 1557536

End: 1558540

Strand: Reverse

Name: xynD [H]

Synonym: BDI_1339

Alternate gene names: 150007977

Gene position: 1558540-1557536 (Counterclockwise)

Preceding gene: 150007978

Following gene: 150007976

Centisome position: 32.39

GC content: 49.25

Gene sequence:

>1005_bases
ATGATAAACGGAAAGAAAAGCCTGTTTTACACAGTATTGATGGCCGGTGCCTTGATGTCCTGCGGGGGTCCTAAACAGGC
TCCAAGCGAAGAGGTAGCGAAGAGTGGTAATCCTGTATTCGAGGGTTGGTACGCCGATCCGGAGGGAATTATTTACGGGG
ATACCTATTGGATTTACCCGACTACGAGTGATTTATATGAGAAGCAAACCTTCTTCGATTGCTTCTCTTCCAAGGATTTG
GTGAGTTGGACTAAGCATACCGCCATTCTTGATACGGCAGAGGTGAAATGGGCGAAGATCGCTATGTGGGCTCCTTCAGT
AATCAACAAGGACGGTAAGTATTATCTTTTCTTTGGGGCGAATGACGTGCACGAGGGAGAGATCGGAGGTATCGGTGTTG
CCGTGAGCGATCGTCCGGAAGGGCCTTATAAGGATTTGCTGGGTAAGCCGCTGATCAACGAGATCGTGAATGGGGCGCAG
CCGATCGACCAGTTTGTTTTCCACGACGCTGACAATGATGAGTATTATATGTATTACGGTGGTTGGAAGCACTGCAACAT
GGTACGCTTGAATAAAGACTTTACCGGACTTATACCGTTTGAGGACGGAACGATTTATAAAGAGGTAACTCCCAAGGATT
ACGTGGAAGGCCCGTTTATGTTTAAGAAGAATGGTAAATATTACTTCATGTGGAGTGAGGGTGGCTGGACCGGACCGGAT
TACAAGGTCGCTTACGCCATCTCCGATTCTCCTTTTGGCCCGTTCAATCGTATCGGGGAGGTCTTGCGGCAAAATTTCGA
TATGGCAAACGGAGCGGGTCACCACTCGATCATGCATGTGCCGAATTCGGAAGATTACTACATCGTGTACCATCGCCGGC
CGGCCGGGGTCAAGACACGTGACCACCGGGAGACTTGTATCGAGAAGATGACGTTCAACGAGGAGGGATTGATCAATCCC
GTGGAGATTACGACCGAAGGAGTTGAGGCTCGCACGATCCAATAA

Upstream 100 bases:

>100_bases
TCTTTATAAGGAGACCTCGGAAGGTGGTTTGGCGAAGAACATGGAGAACTCGAATAATTAAAAGATACTATTTGATTTAC
TAATAAATAATCTACTATTG

Downstream 100 bases:

>100_bases
TTACTTCCGATAGAAATGAAAGGCGGGTTCGAAGGGAATCCGCTTTCCTCTCGAAAGGAATCGTATTTCCTCTCGAATGA
AAAAAAGAAGGATTACATAG

Product: glycoside hydrolase family beta-glycosidase

Products: NA

Alternate protein names: AXH; AXH-m2,3; AXH-m23; Alpha-L-arabinofuranosidase; AF [H]

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MINGKKSLFYTVLMAGALMSCGGPKQAPSEEVAKSGNPVFEGWYADPEGIIYGDTYWIYPTTSDLYEKQTFFDCFSSKDL
VSWTKHTAILDTAEVKWAKIAMWAPSVINKDGKYYLFFGANDVHEGEIGGIGVAVSDRPEGPYKDLLGKPLINEIVNGAQ
PIDQFVFHDADNDEYYMYYGGWKHCNMVRLNKDFTGLIPFEDGTIYKEVTPKDYVEGPFMFKKNGKYYFMWSEGGWTGPD
YKVAYAISDSPFGPFNRIGEVLRQNFDMANGAGHHSIMHVPNSEDYYIVYHRRPAGVKTRDHRETCIEKMTFNEEGLINP
VEITTEGVEARTIQ

Sequences:

>Translated_334_residues
MINGKKSLFYTVLMAGALMSCGGPKQAPSEEVAKSGNPVFEGWYADPEGIIYGDTYWIYPTTSDLYEKQTFFDCFSSKDL
VSWTKHTAILDTAEVKWAKIAMWAPSVINKDGKYYLFFGANDVHEGEIGGIGVAVSDRPEGPYKDLLGKPLINEIVNGAQ
PIDQFVFHDADNDEYYMYYGGWKHCNMVRLNKDFTGLIPFEDGTIYKEVTPKDYVEGPFMFKKNGKYYFMWSEGGWTGPD
YKVAYAISDSPFGPFNRIGEVLRQNFDMANGAGHHSIMHVPNSEDYYIVYHRRPAGVKTRDHRETCIEKMTFNEEGLINP
VEITTEGVEARTIQ
>Mature_334_residues
MINGKKSLFYTVLMAGALMSCGGPKQAPSEEVAKSGNPVFEGWYADPEGIIYGDTYWIYPTTSDLYEKQTFFDCFSSKDL
VSWTKHTAILDTAEVKWAKIAMWAPSVINKDGKYYLFFGANDVHEGEIGGIGVAVSDRPEGPYKDLLGKPLINEIVNGAQ
PIDQFVFHDADNDEYYMYYGGWKHCNMVRLNKDFTGLIPFEDGTIYKEVTPKDYVEGPFMFKKNGKYYFMWSEGGWTGPD
YKVAYAISDSPFGPFNRIGEVLRQNFDMANGAGHHSIMHVPNSEDYYIVYHRRPAGVKTRDHRETCIEKMTFNEEGLINP
VEITTEGVEARTIQ

Specific function: Cleaves arabinose units from O-2- or O-3-monosubstituted xylose residues, thereby assisting in arabinoxylan (AX) and short- chain arabinoxylo-oligosaccharide (AXOS) degradation. Is more active on wheat bran AXOS than on wheat water-extractable AX and rye

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CBM6 (carbohydrate binding type-6) domain [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=277, Percent_Identity=24.9097472924188, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005084
- InterPro:   IPR006584
- InterPro:   IPR008979
- InterPro:   IPR006710 [H]

Pfam domain/function: PF03422 CBM_6; PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.55 [H]

Molecular weight: Translated: 37847; Mature: 37847

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINGKKSLFYTVLMAGALMSCGGPKQAPSEEVAKSGNPVFEGWYADPEGIIYGDTYWIYP
CCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCEEEEEECCCCCEEECCEEEEEC
TTSDLYEKQTFFDCFSSKDLVSWTKHTAILDTAEVKWAKIAMWAPSVINKDGKYYLFFGA
CCHHHHHHHHHHHHHCCCCHHHHHHHEEEEECCCCCEEEEEEECHHHHCCCCCEEEEECC
NDVHEGEIGGIGVAVSDRPEGPYKDLLGKPLINEIVNGAQPIDQFVFHDADNDEYYMYYG
CCCCCCCCCEEEEEECCCCCCCHHHHHCCHHHHHHHCCCCCHHHHHEECCCCCCEEEEEC
GWKHCNMVRLNKDFTGLIPFEDGTIYKEVTPKDYVEGPFMFKKNGKYYFMWSEGGWTGPD
CCCCCEEEEECCCCEEEEECCCCEEEEECCCHHHCCCCEEEEECCCEEEEECCCCCCCCC
YKVAYAISDSPFGPFNRIGEVLRQNFDMANGAGHHSIMHVPNSEDYYIVYHRRPAGVKTR
EEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCCC
DHRETCIEKMTFNEEGLINPVEITTEGVEARTIQ
HHHHHHHHHHCCCCCCCCCCEEEEECCCEEEECC
>Mature Secondary Structure
MINGKKSLFYTVLMAGALMSCGGPKQAPSEEVAKSGNPVFEGWYADPEGIIYGDTYWIYP
CCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCEEEEEECCCCCEEECCEEEEEC
TTSDLYEKQTFFDCFSSKDLVSWTKHTAILDTAEVKWAKIAMWAPSVINKDGKYYLFFGA
CCHHHHHHHHHHHHHCCCCHHHHHHHEEEEECCCCCEEEEEEECHHHHCCCCCEEEEECC
NDVHEGEIGGIGVAVSDRPEGPYKDLLGKPLINEIVNGAQPIDQFVFHDADNDEYYMYYG
CCCCCCCCCEEEEEECCCCCCCHHHHHCCHHHHHHHCCCCCHHHHHEECCCCCCEEEEEC
GWKHCNMVRLNKDFTGLIPFEDGTIYKEVTPKDYVEGPFMFKKNGKYYFMWSEGGWTGPD
CCCCCEEEEECCCCEEEEECCCCEEEEECCCHHHCCCCEEEEECCCEEEEECCCCCCCCC
YKVAYAISDSPFGPFNRIGEVLRQNFDMANGAGHHSIMHVPNSEDYYIVYHRRPAGVKTR
EEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCCC
DHRETCIEKMTFNEEGLINPVEITTEGVEARTIQ
HHHHHHHHHHCCCCCCCCCCEEEEECCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 10658653 [H]