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The map label for this gene is msmR [H]

Identifier: 150007963

GI number: 150007963

Start: 1541062

End: 1541949

Strand: Direct

Name: msmR [H]

Synonym: BDI_1324

Alternate gene names: 150007963

Gene position: 1541062-1541949 (Clockwise)

Preceding gene: 150007954

Following gene: 150007965

Centisome position: 32.03

GC content: 47.86

Gene sequence:

>888_bases
ATGAACGAACTGCGGAATGATTTACTACGTTACTTGACGATCAGCGCTACGGATGAGGAATGGGGAATCGTCGTCACGAC
GGTCGGATATCAATTCATCCCGCCGGGTTGCGCCTATCCACTTTCCCGGCATCCGGAGAAGTATAATTTCAAGCCTCAGA
CCGGGCGCATCCTGAATGAGTATCAATTGGTATATATAACGAAAGGTAGCGGGTACTTTTCCTCCCAGTCTTGTAAATCG
CAAAAGATAAACGCAGGGACGATGATCCTCCTTTTCCCCGGGGAATGGCATAGTTATTATCCGGACCGGGAAACGGGATG
GGATGAGTATTGGGTAGGTTTTCGGGGTATTCATATCGATAAACGTGTGGAGAAGAAATTCTTTACCAAGGAAGAGCCGC
TACACCGGATCGGGCTGAGCGCTACGATCGTCGGACTTTATGAGGATATACTGAAGTTCGCCTCGGAGGAGAAATCCGGT
TACCAACAGATGATCTCCAGTATCGTGCTTCATATATTAGGCTCCGTATATTATAAGGAAAAGAACAACTCCTTCACGAA
CACCTATGTCGTAGATAAAATCAACGAGGCACGTATATTAATGAAGGAGAACATCGAGGACCCATTAAGTCCGGAAGAGA
TCGCTGCCCGTCTTGGTTTAGGTTATTCATGGTTTCGCCGGATGTTTAAGGAATACACCGGCGTCTCCCCCGCCCAATAT
CAATTACAACAGAAGCTCCTTCGTGCGAAAGAGCTTCTGACTAGCACCCCTTTGACGATCTCCGAGATCGCCTATAGCCT
GCATTTCGAGAATGCCGGCCAGTTCTCCACATTCTTTAAGAAGAAAGAAGGGGTTACACCCTCGGAATTCAGGGATCGGA
CGCATTGA

Upstream 100 bases:

>100_bases
CTTCATGGCTTAACAAAGTTATTTGTTTGACGAAAGCAAAAGTAGAAGCATTATTGCTATATTTGCTTACGAAAATGATT
TTAAACCTTTCAAATCTGAC

Downstream 100 bases:

>100_bases
GCTGGAGTGAACCGCTCAATAAGGTTTATAAGGCGTACGCATGACATTCCATGTTTTTGGTAGCCACACTCTATAACGTT
CTGCCTGATTCCACGTATTA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MNELRNDLLRYLTISATDEEWGIVVTTVGYQFIPPGCAYPLSRHPEKYNFKPQTGRILNEYQLVYITKGSGYFSSQSCKS
QKINAGTMILLFPGEWHSYYPDRETGWDEYWVGFRGIHIDKRVEKKFFTKEEPLHRIGLSATIVGLYEDILKFASEEKSG
YQQMISSIVLHILGSVYYKEKNNSFTNTYVVDKINEARILMKENIEDPLSPEEIAARLGLGYSWFRRMFKEYTGVSPAQY
QLQQKLLRAKELLTSTPLTISEIAYSLHFENAGQFSTFFKKKEGVTPSEFRDRTH

Sequences:

>Translated_295_residues
MNELRNDLLRYLTISATDEEWGIVVTTVGYQFIPPGCAYPLSRHPEKYNFKPQTGRILNEYQLVYITKGSGYFSSQSCKS
QKINAGTMILLFPGEWHSYYPDRETGWDEYWVGFRGIHIDKRVEKKFFTKEEPLHRIGLSATIVGLYEDILKFASEEKSG
YQQMISSIVLHILGSVYYKEKNNSFTNTYVVDKINEARILMKENIEDPLSPEEIAARLGLGYSWFRRMFKEYTGVSPAQY
QLQQKLLRAKELLTSTPLTISEIAYSLHFENAGQFSTFFKKKEGVTPSEFRDRTH
>Mature_295_residues
MNELRNDLLRYLTISATDEEWGIVVTTVGYQFIPPGCAYPLSRHPEKYNFKPQTGRILNEYQLVYITKGSGYFSSQSCKS
QKINAGTMILLFPGEWHSYYPDRETGWDEYWVGFRGIHIDKRVEKKFFTKEEPLHRIGLSATIVGLYEDILKFASEEKSG
YQQMISSIVLHILGSVYYKEKNNSFTNTYVVDKINEARILMKENIEDPLSPEEIAARLGLGYSWFRRMFKEYTGVSPAQY
QLQQKLLRAKELLTSTPLTISEIAYSLHFENAGQFSTFFKKKEGVTPSEFRDRTH

Specific function: Regulatory protein for the msm operon for multiple sugar metabolism. Activates the transcription of the msmEFGK, aga, dexB and gftA genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34234; Mature: 34234

Theoretical pI: Translated: 8.16; Mature: 8.16

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNELRNDLLRYLTISATDEEWGIVVTTVGYQFIPPGCAYPLSRHPEKYNFKPQTGRILNE
CCHHHHHHHHHEEEECCCCCCCEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCEECC
YQLVYITKGSGYFSSQSCKSQKINAGTMILLFPGEWHSYYPDRETGWDEYWVGFRGIHID
EEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHCEEEEEHH
KRVEKKFFTKEEPLHRIGLSATIVGLYEDILKFASEEKSGYQQMISSIVLHILGSVYYKE
HHHHHHHCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
KNNSFTNTYVVDKINEARILMKENIEDPLSPEEIAARLGLGYSWFRRMFKEYTGVSPAQY
CCCCCCCEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHH
QLQQKLLRAKELLTSTPLTISEIAYSLHFENAGQFSTFFKKKEGVTPSEFRDRTH
HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHCCCC
>Mature Secondary Structure
MNELRNDLLRYLTISATDEEWGIVVTTVGYQFIPPGCAYPLSRHPEKYNFKPQTGRILNE
CCHHHHHHHHHEEEECCCCCCCEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCEECC
YQLVYITKGSGYFSSQSCKSQKINAGTMILLFPGEWHSYYPDRETGWDEYWVGFRGIHID
EEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHCEEEEEHH
KRVEKKFFTKEEPLHRIGLSATIVGLYEDILKFASEEKSGYQQMISSIVLHILGSVYYKE
HHHHHHHCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
KNNSFTNTYVVDKINEARILMKENIEDPLSPEEIAARLGLGYSWFRRMFKEYTGVSPAQY
CCCCCCCEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHH
QLQQKLLRAKELLTSTPLTISEIAYSLHFENAGQFSTFFKKKEGVTPSEFRDRTH
HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1537846; 12397186 [H]