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The map label for this gene is rhaA [H]

Identifier: 150007961

GI number: 150007961

Start: 1538248

End: 1539507

Strand: Reverse

Name: rhaA [H]

Synonym: BDI_1322

Alternate gene names: 150007961

Gene position: 1539507-1538248 (Counterclockwise)

Preceding gene: 150007962

Following gene: 150007960

Centisome position: 32.0

GC content: 49.6

Gene sequence:

>1260_bases
ATGACAAAAGACAGTTTAATTCAACAGGCATTTGAAGTAGCGGCAGAACGCTATGCGGCCGTAGGTGTAGACGTTCGTAA
AGCTTTAGAGGATATGAAGAAAATATCCCTATCCCTGCATTGCTGGCAGGCCGATGACGTAAGCGGTTTCGAGAACCAAG
GCGGCTCCTTGACTGGTGGTATACAAGTGACCGGCAATTATCCGGGACGTGCCCGTACTATCGACGAGTTGCGCCGGGAT
GTATTGAAGGCGAAATCCTATATCCCCGGTAATCATCGGCTTAGTCTGCATGAGATCTACGGGGATTTCCAAGGGGAGAA
AGTAGACCGTGACGAGGTAGAACCCCGTCATTTCGAGAGCTGGATACAATGGGCGAAAGAGAATGATTTCAAGCTAGACT
TCAACAGTACCTCTTTCTCGCACCCTAAAAGCGGAGATTTGACCTTGGCGAACCCCAGCGAGGATATCCGTAACTTCTGG
ATCGAGCATACGAAGCGTTGTCGCTGGATCAGCGATGAGATGGGCAAAGCCCAGAACGATCCTTGCATGATGAACCTTTG
GATACATGACGGGAGCAAGGAAGTACCGGCCAGCCGCTTACGTTATCGCCGTATCTTGGAGGAATCGCTGGATGAGATAT
TCGCTACCGAATATAAATGGATGAAAGATTGTATCGAGGCGAAACTCTTCGGTATCGGTCTGGAAAGTTATACGGTAGGT
TCCTATGATTTCTATTTGGGTTACGGGGCGAAAAAGAACAAGATCGTTACCTTGGACACCGGCCATTTCCATTTGACGGA
AAGTATCGCCGACAAGGTTTCCTCGTTATTGCTGTTTACGCCCGAGATCATGTTGCACGTAAGTCGTCCGATCCGTTGGG
ATAGCGATCATGTCGTGATCTTGAATGACGATGTGCAGGATTTAGCCCGTGAGATCGTGCGTTGCGACGCCTTGGACCGG
GTACATATCGGTTTGGATTATTTCGACGCTACCATCAATCGTATCGGTGCTTATGTCATTGGTAGCCGTGCTACGCAAAA
AGCCTTTATGCTCGCTTTGCTGGAGCCGATCGCCTTGCTTCGCCAGTACGAGGATGAGGGTAAGTATTTCCAGCGTCTTG
CCTTGCAGGAGGAAGCGAAGAGTCTGCCTTGGGGGGCGGTTTGGGATATGTATTGTCTACAAAGTGGGGTCCCCGTAGGA
GAGTCTTATATCGCTGAGATCGAGAAATATGAGTCCGACGTTACCTCAAGACGGCAATGA

Upstream 100 bases:

>100_bases
GGGAGATGCGAAGACTGATAGCCACCGCATTCCCTCCCAAGGAATTTTATCCGGAAAGGTGATACACTTTCAAATCATAT
AAATTTAAAAACATCATACC

Downstream 100 bases:

>100_bases
TAGAGATCGGGATCGGGTTGTTGATCATCGCGATCGGCAGTTTCGGGCAGAGTAGCTCGTACGTGCCGATCAATAAGATC
CGGGATTGGAGTTGGGAAAG

Product: L-rhamnose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 418

Protein sequence:

>419_residues
MTKDSLIQQAFEVAAERYAAVGVDVRKALEDMKKISLSLHCWQADDVSGFENQGGSLTGGIQVTGNYPGRARTIDELRRD
VLKAKSYIPGNHRLSLHEIYGDFQGEKVDRDEVEPRHFESWIQWAKENDFKLDFNSTSFSHPKSGDLTLANPSEDIRNFW
IEHTKRCRWISDEMGKAQNDPCMMNLWIHDGSKEVPASRLRYRRILEESLDEIFATEYKWMKDCIEAKLFGIGLESYTVG
SYDFYLGYGAKKNKIVTLDTGHFHLTESIADKVSSLLLFTPEIMLHVSRPIRWDSDHVVILNDDVQDLAREIVRCDALDR
VHIGLDYFDATINRIGAYVIGSRATQKAFMLALLEPIALLRQYEDEGKYFQRLALQEEAKSLPWGAVWDMYCLQSGVPVG
ESYIAEIEKYESDVTSRRQ

Sequences:

>Translated_419_residues
MTKDSLIQQAFEVAAERYAAVGVDVRKALEDMKKISLSLHCWQADDVSGFENQGGSLTGGIQVTGNYPGRARTIDELRRD
VLKAKSYIPGNHRLSLHEIYGDFQGEKVDRDEVEPRHFESWIQWAKENDFKLDFNSTSFSHPKSGDLTLANPSEDIRNFW
IEHTKRCRWISDEMGKAQNDPCMMNLWIHDGSKEVPASRLRYRRILEESLDEIFATEYKWMKDCIEAKLFGIGLESYTVG
SYDFYLGYGAKKNKIVTLDTGHFHLTESIADKVSSLLLFTPEIMLHVSRPIRWDSDHVVILNDDVQDLAREIVRCDALDR
VHIGLDYFDATINRIGAYVIGSRATQKAFMLALLEPIALLRQYEDEGKYFQRLALQEEAKSLPWGAVWDMYCLQSGVPVG
ESYIAEIEKYESDVTSRRQ
>Mature_418_residues
TKDSLIQQAFEVAAERYAAVGVDVRKALEDMKKISLSLHCWQADDVSGFENQGGSLTGGIQVTGNYPGRARTIDELRRDV
LKAKSYIPGNHRLSLHEIYGDFQGEKVDRDEVEPRHFESWIQWAKENDFKLDFNSTSFSHPKSGDLTLANPSEDIRNFWI
EHTKRCRWISDEMGKAQNDPCMMNLWIHDGSKEVPASRLRYRRILEESLDEIFATEYKWMKDCIEAKLFGIGLESYTVGS
YDFYLGYGAKKNKIVTLDTGHFHLTESIADKVSSLLLFTPEIMLHVSRPIRWDSDHVVILNDDVQDLAREIVRCDALDRV
HIGLDYFDATINRIGAYVIGSRATQKAFMLALLEPIALLRQYEDEGKYFQRLALQEEAKSLPWGAVWDMYCLQSGVPVGE
SYIAEIEKYESDVTSRRQ

Specific function: Metabolism of L-rhamnose; first step. [C]

COG id: COG4806

COG function: function code G; L-rhamnose isomerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rhamnose isomerase family [H]

Homologues:

Organism=Escherichia coli, GI48994990, Length=415, Percent_Identity=52.289156626506, Blast_Score=461, Evalue=1e-131,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009308
- InterPro:   IPR013022 [H]

Pfam domain/function: PF06134 RhaA [H]

EC number: =5.3.1.14 [H]

Molecular weight: Translated: 48058; Mature: 47927

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKDSLIQQAFEVAAERYAAVGVDVRKALEDMKKISLSLHCWQADDVSGFENQGGSLTGG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCEECC
IQVTGNYPGRARTIDELRRDVLKAKSYIPGNHRLSLHEIYGDFQGEKVDRDEVEPRHFES
EEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEHHHHHCCCCCCCCCHHCCCHHHHHH
WIQWAKENDFKLDFNSTSFSHPKSGDLTLANPSEDIRNFWIEHTKRCRWISDEMGKAQND
HHHHHCCCCEEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCHHHHHCCCCCC
PCMMNLWIHDGSKEVPASRLRYRRILEESLDEIFATEYKWMKDCIEAKLFGIGLESYTVG
CEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEC
SYDFYLGYGAKKNKIVTLDTGHFHLTESIADKVSSLLLFTPEIMLHVSRPIRWDSDHVVI
CEEEEEECCCCCCEEEEEECCCEEEHHHHHHHHHHHHHHCHHHHHEECCCCEECCCCEEE
LNDDVQDLAREIVRCDALDRVHIGLDYFDATINRIGAYVIGSRATQKAFMLALLEPIALL
ECCCHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
RQYEDEGKYFQRLALQEEAKSLPWGAVWDMYCLQSGVPVGESYIAEIEKYESDVTSRRQ
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TKDSLIQQAFEVAAERYAAVGVDVRKALEDMKKISLSLHCWQADDVSGFENQGGSLTGG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCEECC
IQVTGNYPGRARTIDELRRDVLKAKSYIPGNHRLSLHEIYGDFQGEKVDRDEVEPRHFES
EEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEHHHHHCCCCCCCCCHHCCCHHHHHH
WIQWAKENDFKLDFNSTSFSHPKSGDLTLANPSEDIRNFWIEHTKRCRWISDEMGKAQND
HHHHHCCCCEEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCHHHHHCCCCCC
PCMMNLWIHDGSKEVPASRLRYRRILEESLDEIFATEYKWMKDCIEAKLFGIGLESYTVG
CEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEC
SYDFYLGYGAKKNKIVTLDTGHFHLTESIADKVSSLLLFTPEIMLHVSRPIRWDSDHVVI
CEEEEEECCCCCCEEEEEECCCEEEHHHHHHHHHHHHHHCHHHHHEECCCCEECCCCEEE
LNDDVQDLAREIVRCDALDRVHIGLDYFDATINRIGAYVIGSRATQKAFMLALLEPIALL
ECCCHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
RQYEDEGKYFQRLALQEEAKSLPWGAVWDMYCLQSGVPVGESYIAEIEKYESDVTSRRQ
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12663928 [H]