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The map label for this gene is rhaD [H]

Identifier: 150007959

GI number: 150007959

Start: 1536411

End: 1537211

Strand: Reverse

Name: rhaD [H]

Synonym: BDI_1320

Alternate gene names: 150007959

Gene position: 1537211-1536411 (Counterclockwise)

Preceding gene: 150007960

Following gene: 150007958

Centisome position: 31.95

GC content: 52.43

Gene sequence:

>801_bases
ATGATAATACTAAGAAACAATGAACGCCTGATGGCGGAAATAGATCGTATCGCCGAGGTCGCCGGCTATTTGTGGACCAA
GGGTTGGGCTGAGCGAAACGGCGGGAATATATCGGTGAACCTGACTACTTTATTGAGCGAGGAGGAGAAGGCGTTGCCGG
CTTTGGTTTCCTCGATTCCCTTGCAAGAGGCGATGACGGCCTTATGCGGGCACGTCTTTTATGTGACGGGTACCGGAAAA
CGGATGCGTTACGTGGCGAAAGATCCTTTCGCCAACGGCTCTTTGATCCGTATCGCCGCCGATGGGAAATCGTATGATAT
CCTAGCGGAGCAACCGATCCAACCGACTTCCGAGTTGCCTTCCCATTTGTTGATGCACAATTTCTTGCGTGCGAAGGGAC
GGGATAACCGGGTGGTATTGCATACGCATCCGACGGATATTATCGGCATGACGCATTGCAAGCCATTCTTGGATTCGGAC
AAGATTACCCGCACGTTATGGAGTATGATTCCGGAATGTCGGATTATCGTGCCGAAAGGGGTCGGTATTGTTCCTTACGA
GATACCGGGCACTTTGGCGTTGGCGCACGCTACGATCCGTCAGTTAGAGGAGCACGACGTGGTGTTCTGGGAGAAGCACG
GTATCCTTGCCGTCGGTGAGGACCTGATCGAGTGCTTCGATGCGATTGATACGTTGAGTAAATCCGCCCAGATCTATTTC
AGTGCCCGCATGACCGGTTACGAGCCGGAAGGTATGACGGATCAGCAATTGGATGACTTGGTTCCGGCTTTTGGACTCTA
G

Upstream 100 bases:

>100_bases
GGAAGGGCGTGGATCGCCGGACGATCGTGGTATTGATTACCGGCATGTGTATCTTGATCCTTTCCTTATTATATCCGAAT
ATAGTTTAATTAAAATAGAC

Downstream 100 bases:

>100_bases
CGTATGCGAAAGAAATTAATCATTCTATTCATAGGGATCGGTTCGTTCACGTTGTTCGCCCAGCAGCGAGACCATCGGAC
ACGGGAGTATATCGCTCCGG

Product: rhamnulose-1-phosphate aldolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MIILRNNERLMAEIDRIAEVAGYLWTKGWAERNGGNISVNLTTLLSEEEKALPALVSSIPLQEAMTALCGHVFYVTGTGK
RMRYVAKDPFANGSLIRIAADGKSYDILAEQPIQPTSELPSHLLMHNFLRAKGRDNRVVLHTHPTDIIGMTHCKPFLDSD
KITRTLWSMIPECRIIVPKGVGIVPYEIPGTLALAHATIRQLEEHDVVFWEKHGILAVGEDLIECFDAIDTLSKSAQIYF
SARMTGYEPEGMTDQQLDDLVPAFGL

Sequences:

>Translated_266_residues
MIILRNNERLMAEIDRIAEVAGYLWTKGWAERNGGNISVNLTTLLSEEEKALPALVSSIPLQEAMTALCGHVFYVTGTGK
RMRYVAKDPFANGSLIRIAADGKSYDILAEQPIQPTSELPSHLLMHNFLRAKGRDNRVVLHTHPTDIIGMTHCKPFLDSD
KITRTLWSMIPECRIIVPKGVGIVPYEIPGTLALAHATIRQLEEHDVVFWEKHGILAVGEDLIECFDAIDTLSKSAQIYF
SARMTGYEPEGMTDQQLDDLVPAFGL
>Mature_266_residues
MIILRNNERLMAEIDRIAEVAGYLWTKGWAERNGGNISVNLTTLLSEEEKALPALVSSIPLQEAMTALCGHVFYVTGTGK
RMRYVAKDPFANGSLIRIAADGKSYDILAEQPIQPTSELPSHLLMHNFLRAKGRDNRVVLHTHPTDIIGMTHCKPFLDSD
KITRTLWSMIPECRIIVPKGVGIVPYEIPGTLALAHATIRQLEEHDVVFWEKHGILAVGEDLIECFDAIDTLSKSAQIYF
SARMTGYEPEGMTDQQLDDLVPAFGL

Specific function: Catalyzes the reversible cleavage of L-rhamnulose-1- phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde [H]

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family. RhaD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790336, Length=248, Percent_Identity=36.2903225806452, Blast_Score=159, Evalue=2e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001303
- InterPro:   IPR013447 [H]

Pfam domain/function: PF00596 Aldolase_II [H]

EC number: =4.1.2.19 [H]

Molecular weight: Translated: 29613; Mature: 29613

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIILRNNERLMAEIDRIAEVAGYLWTKGWAERNGGNISVNLTTLLSEEEKALPALVSSIP
CEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHCC
LQEAMTALCGHVFYVTGTGKRMRYVAKDPFANGSLIRIAADGKSYDILAEQPIQPTSELP
HHHHHHHHHCEEEEEEECCCEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCHHHHH
SHLLMHNFLRAKGRDNRVVLHTHPTDIIGMTHCKPFLDSDKITRTLWSMIPECRIIVPKG
HHHHHHHHHHHCCCCCEEEEEECCCCEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEECC
VGIVPYEIPGTLALAHATIRQLEEHDVVFWEKHGILAVGEDLIECFDAIDTLSKSAQIYF
CCEEEEECCCHHHHHHHHHHHHHHCCEEEEECCCEEEECHHHHHHHHHHHHHCCCCEEEE
SARMTGYEPEGMTDQQLDDLVPAFGL
EEEECCCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MIILRNNERLMAEIDRIAEVAGYLWTKGWAERNGGNISVNLTTLLSEEEKALPALVSSIP
CEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHCC
LQEAMTALCGHVFYVTGTGKRMRYVAKDPFANGSLIRIAADGKSYDILAEQPIQPTSELP
HHHHHHHHHCEEEEEEECCCEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCHHHHH
SHLLMHNFLRAKGRDNRVVLHTHPTDIIGMTHCKPFLDSDKITRTLWSMIPECRIIVPKG
HHHHHHHHHHHCCCCCEEEEEECCCCEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEECC
VGIVPYEIPGTLALAHATIRQLEEHDVVFWEKHGILAVGEDLIECFDAIDTLSKSAQIYF
CCEEEEECCCHHHHHHHHHHHHHHCCEEEEECCCEEEECHHHHHHHHHHHHHCCCCEEEE
SARMTGYEPEGMTDQQLDDLVPAFGL
EEEECCCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12663928 [H]