Click here to switch to the map view.

The map label for this gene is rpoE [C]

Identifier: 150007944

GI number: 150007944

Start: 1514975

End: 1515514

Strand: Direct

Name: rpoE [C]

Synonym: BDI_1305

Alternate gene names: 150007944

Gene position: 1514975-1515514 (Clockwise)

Preceding gene: 150007943

Following gene: 150007945

Centisome position: 31.49

GC content: 44.07

Gene sequence:

>540_bases
ATGGATTTGTTCGTACTCAAAAAGATCAAGGAAGGGGATATTAAAGCATTCGAAAGTATTTTCAGGCTTTATTATACCCC
TCTTTGCCTGTACGCAACCAGTATAACAGGAGAGCAGGAAGTCGCAGAGGAGATAGTTCAGGACTTGTTTTATGTATTCT
GGAAAGAAAGAGAATCTCTTCCAATCTTACGTTCCATCAAGAACTACCTTTATGGAGCTACCCGGAACCGGTCCTTACAA
TATCTGGAGCATCGGGAAGTACGATACCGATACCGGAATACGGTTTTAGCCGGAGAGAATCCGGAATCCGAATCGTATAC
CCCGCAAGATCAACTTGAGTACAAAGAATTGCAATCCTTGGTCAACCGGGCATTAGGTAAATTGCCCGAACGCCGCCTCC
GGATCTTTCGGATGCACCGTTTCGAAGGAATGAAATACGCGGAGATAGCCTCCAGCCTCTCATTGTCCATAAAGACAGTA
GAAGCGGAAATGACCAAGGCACTACAAACACTAAGAAAAGAAATCGAGAATTATACCTAA

Upstream 100 bases:

>100_bases
AAGCAACATAAAAATTGACCGTGTAAATATACTATCGACAATGATATGGACAAATCATTATCTTTGTCTATTATCAATTA
TCTGTTGAAACCAAATTATT

Downstream 100 bases:

>100_bases
CAGTTATGAATCAAATAGAAAAAAATAAATTGAAGACAGACCAAGCATGGGAACAATTATACACTCGCTTGGAGCAAGAC
GGGCTGCTGGATAAGCCAAT

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-H Factor; RNA Polymerase Sigma Factor Sigma-70 Family; ECF-Type RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-70 Factor; Sigma-70 Region 2 Subfamily; ECF Sigma Factor; RNA Polymerase Sigma-70 Region; ECF Family RNA Polymerase Sigma-70 Factor; Sigma Factor; RNA Polymerase Sigma-W Factor; RNA Polymerase ECF Sigma Factor; ECF-Type Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MDLFVLKKIKEGDIKAFESIFRLYYTPLCLYATSITGEQEVAEEIVQDLFYVFWKERESLPILRSIKNYLYGATRNRSLQ
YLEHREVRYRYRNTVLAGENPESESYTPQDQLEYKELQSLVNRALGKLPERRLRIFRMHRFEGMKYAEIASSLSLSIKTV
EAEMTKALQTLRKEIENYT

Sequences:

>Translated_179_residues
MDLFVLKKIKEGDIKAFESIFRLYYTPLCLYATSITGEQEVAEEIVQDLFYVFWKERESLPILRSIKNYLYGATRNRSLQ
YLEHREVRYRYRNTVLAGENPESESYTPQDQLEYKELQSLVNRALGKLPERRLRIFRMHRFEGMKYAEIASSLSLSIKTV
EAEMTKALQTLRKEIENYT
>Mature_179_residues
MDLFVLKKIKEGDIKAFESIFRLYYTPLCLYATSITGEQEVAEEIVQDLFYVFWKERESLPILRSIKNYLYGATRNRSLQ
YLEHREVRYRYRNTVLAGENPESESYTPQDQLEYKELQSLVNRALGKLPERRLRIFRMHRFEGMKYAEIASSLSLSIKTV
EAEMTKALQTLRKEIENYT

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21300; Mature: 21300

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLFVLKKIKEGDIKAFESIFRLYYTPLCLYATSITGEQEVAEEIVQDLFYVFWKERESL
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
PILRSIKNYLYGATRNRSLQYLEHREVRYRYRNTVLAGENPESESYTPQDQLEYKELQSL
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCEECCCCCCCCCCCCHHHHHHHHHHHH
VNRALGKLPERRLRIFRMHRFEGMKYAEIASSLSLSIKTVEAEMTKALQTLRKEIENYT
HHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDLFVLKKIKEGDIKAFESIFRLYYTPLCLYATSITGEQEVAEEIVQDLFYVFWKERESL
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
PILRSIKNYLYGATRNRSLQYLEHREVRYRYRNTVLAGENPESESYTPQDQLEYKELQSL
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCEECCCCCCCCCCCCHHHHHHHHHHHH
VNRALGKLPERRLRIFRMHRFEGMKYAEIASSLSLSIKTVEAEMTKALQTLRKEIENYT
HHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA