| Definition | Parabacteroides distasonis ATCC 8503 chromosome, complete genome. |
|---|---|
| Accession | NC_009615 |
| Length | 4,811,379 |
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The map label for this gene is 150007905
Identifier: 150007905
GI number: 150007905
Start: 1469642
End: 1470856
Strand: Reverse
Name: 150007905
Synonym: BDI_1265
Alternate gene names: NA
Gene position: 1470856-1469642 (Counterclockwise)
Preceding gene: 150007906
Following gene: 150007904
Centisome position: 30.57
GC content: 45.27
Gene sequence:
>1215_bases ATGGCTACAGTAAAAATTAAATTCAGACCTTCCTCTGTGGATGGCAGAGAGGGAACGGTTTATTATCAAGTGATTCACGG GCGTGTGGCAAGACAGATCAACACTTCCTATAAGTTGTTTCCTGCCGAGTGGGATAAACGTCATTCCCGGATTGTCATCA TTTCGCCGGATAAGGACAGACAACAATATCTCTTGTCATTAGATAAAAAAATAACGGAAGATATTGACCGGCTGGAGAAT GTCATCACTGTCTTGGAACGGAAGGGAGGTGCTTTCACTGCCGATGGCGTAACTTCCGCCTTTCACGGCGAGCATCGCGG GCTTTTCTTTCTTGTTTTTATGCGGGAAGTAATAAATGGCCTGAAGTATCTGGGAAAAGTACGAACCGTTGAGACCTATA ACTCCGCGCTCAACAGTTTCATGCGATTTATGGGTGGGAAGGACGTGCCGCTCAGGGATATGGATTTCGATCTGATAATT GCATACGAAGCATGGCTGAAGTCTAAAGAAATCTCCATGAACACGATATCCTTTTACATGCGTATTTTGCGTGCGACCTA CAACCGTGCCGTAGAGAAGGAACTCGTCACCCAGCGTTTTCCCTTCAAATATGTCTATACGGGAGTCGAGAGGACAACGA AGCGGGCCGTTCCACTGCGTGTGATGAAACAGCTCCGAATGTTGGACCTGTCAATTTATCCGGCTAAAAGATTTGCGAGG GACATGCTGCTTTTCAGTTTTTATACAAGGGGGATGTCCATGGTCGATATGGCATTCTTAAGGAAGAAGGATCTTGATAA CAGTATCCTTACATACCGGCGGAAAAAAACCGGGCAGCGACTTTTTGTAAAATGGGAGCCATGTATGCAGGAGATCGTGG ACCGTTACAATATTCCTGAGTCTCCATATCTTCTCCCCATCATCGTCAAATCAGGTGTAGACGAGAGAAAACAATATATC AATGCCTCCCATCGTATCAACAGACATTTGAAAACTATAGGAAAAGAATTAGGCTTATCCGTTCCTTTAACTCATTACGT AGCGCGCCATTCCTGGGCCAGCGCAGCCCGGAGTAAGAATATTCCGATCTCTGTAATTAGTGAAGGTATGGGGCATGACT CGGAAACCACTACAAGGATCTATCTGGCCTCATTGGATACTGCCACTATAGATAAAGCGAACAGTCTGATTCTAAAATCC TTGTGCAGAGAGTAG
Upstream 100 bases:
>100_bases CATAAGATTCTTATTCTCTGAAATACAATGTTTTGCGTAAACAGGCAAGTGATTGTATCTGATAATTTTGCATCCTGTAA AATTTTAAATCAGAGAGTTT
Downstream 100 bases:
>100_bases CATATTGGGCGAATGTACCTCTCTTTTCAAGAGAGGTACAAAAAAGAAATATCCTAAATAAGGGATACTTGTTCAAGGAA TGATCTTAGATATGGGAATG
Product: integrase
Products: NA
Alternate protein names: Transposase; Tyrosine Type Site-Specific Recombinase; Tyrosine Site-Specific Recombinase; Integrase Family Protein; Site-Specific Recombinase Phage Integrase Family; Phage Integrase Family Protein; Site-Specific Recombinase IntIA; Bacteriophage Integrase; Site-Specific Recombinase; Integrase/Site-Specific Recombinase; Recombinase/Integrase; Prophage; LOW QUALITY PROTEIN Tyrosine Recombinase; Integrase/Transposase
Number of amino acids: Translated: 404; Mature: 403
Protein sequence:
>404_residues MATVKIKFRPSSVDGREGTVYYQVIHGRVARQINTSYKLFPAEWDKRHSRIVIISPDKDRQQYLLSLDKKITEDIDRLEN VITVLERKGGAFTADGVTSAFHGEHRGLFFLVFMREVINGLKYLGKVRTVETYNSALNSFMRFMGGKDVPLRDMDFDLII AYEAWLKSKEISMNTISFYMRILRATYNRAVEKELVTQRFPFKYVYTGVERTTKRAVPLRVMKQLRMLDLSIYPAKRFAR DMLLFSFYTRGMSMVDMAFLRKKDLDNSILTYRRKKTGQRLFVKWEPCMQEIVDRYNIPESPYLLPIIVKSGVDERKQYI NASHRINRHLKTIGKELGLSVPLTHYVARHSWASAARSKNIPISVISEGMGHDSETTTRIYLASLDTATIDKANSLILKS LCRE
Sequences:
>Translated_404_residues MATVKIKFRPSSVDGREGTVYYQVIHGRVARQINTSYKLFPAEWDKRHSRIVIISPDKDRQQYLLSLDKKITEDIDRLEN VITVLERKGGAFTADGVTSAFHGEHRGLFFLVFMREVINGLKYLGKVRTVETYNSALNSFMRFMGGKDVPLRDMDFDLII AYEAWLKSKEISMNTISFYMRILRATYNRAVEKELVTQRFPFKYVYTGVERTTKRAVPLRVMKQLRMLDLSIYPAKRFAR DMLLFSFYTRGMSMVDMAFLRKKDLDNSILTYRRKKTGQRLFVKWEPCMQEIVDRYNIPESPYLLPIIVKSGVDERKQYI NASHRINRHLKTIGKELGLSVPLTHYVARHSWASAARSKNIPISVISEGMGHDSETTTRIYLASLDTATIDKANSLILKS LCRE >Mature_403_residues ATVKIKFRPSSVDGREGTVYYQVIHGRVARQINTSYKLFPAEWDKRHSRIVIISPDKDRQQYLLSLDKKITEDIDRLENV ITVLERKGGAFTADGVTSAFHGEHRGLFFLVFMREVINGLKYLGKVRTVETYNSALNSFMRFMGGKDVPLRDMDFDLIIA YEAWLKSKEISMNTISFYMRILRATYNRAVEKELVTQRFPFKYVYTGVERTTKRAVPLRVMKQLRMLDLSIYPAKRFARD MLLFSFYTRGMSMVDMAFLRKKDLDNSILTYRRKKTGQRLFVKWEPCMQEIVDRYNIPESPYLLPIIVKSGVDERKQYIN ASHRINRHLKTIGKELGLSVPLTHYVARHSWASAARSKNIPISVISEGMGHDSETTTRIYLASLDTATIDKANSLILKSL CRE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46874; Mature: 46743
Theoretical pI: Translated: 10.38; Mature: 10.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATVKIKFRPSSVDGREGTVYYQVIHGRVARQINTSYKLFPAEWDKRHSRIVIISPDKDR CCEEEEEEECCCCCCCCCEEEEEEHHHHHHHHHCCCEEEECCCCCCCCCEEEEECCCCHH QQYLLSLDKKITEDIDRLENVITVLERKGGAFTADGVTSAFHGEHRGLFFLVFMREVING HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHCCCCCCHHHHHHHHHHHHH LKYLGKVRTVETYNSALNSFMRFMGGKDVPLRDMDFDLIIAYEAWLKSKEISMNTISFYM HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHCCCCCCHHHHHHHH RILRATYNRAVEKELVTQRFPFKYVYTGVERTTKRAVPLRVMKQLRMLDLSIYPAKRFAR HHHHHHHHHHHHHHHHHHHCCHHHEECCHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHH DMLLFSFYTRGMSMVDMAFLRKKDLDNSILTYRRKKTGQRLFVKWEPCMQEIVDRYNIPE HHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCC SPYLLPIIVKSGVDERKQYINASHRINRHLKTIGKELGLSVPLTHYVARHSWASAARSKN CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC IPISVISEGMGHDSETTTRIYLASLDTATIDKANSLILKSLCRE CCHHHHHCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure ATVKIKFRPSSVDGREGTVYYQVIHGRVARQINTSYKLFPAEWDKRHSRIVIISPDKDR CEEEEEEECCCCCCCCCEEEEEEHHHHHHHHHCCCEEEECCCCCCCCCEEEEECCCCHH QQYLLSLDKKITEDIDRLENVITVLERKGGAFTADGVTSAFHGEHRGLFFLVFMREVING HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHCCCCCCHHHHHHHHHHHHH LKYLGKVRTVETYNSALNSFMRFMGGKDVPLRDMDFDLIIAYEAWLKSKEISMNTISFYM HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHCCCCCCHHHHHHHH RILRATYNRAVEKELVTQRFPFKYVYTGVERTTKRAVPLRVMKQLRMLDLSIYPAKRFAR HHHHHHHHHHHHHHHHHHHCCHHHEECCHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHH DMLLFSFYTRGMSMVDMAFLRKKDLDNSILTYRRKKTGQRLFVKWEPCMQEIVDRYNIPE HHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCC SPYLLPIIVKSGVDERKQYINASHRINRHLKTIGKELGLSVPLTHYVARHSWASAARSKN CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC IPISVISEGMGHDSETTTRIYLASLDTATIDKANSLILKSLCRE CCHHHHHCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA