Click here to switch to the map view.

The map label for this gene is yjiR [H]

Identifier: 150007893

GI number: 150007893

Start: 1452450

End: 1453871

Strand: Reverse

Name: yjiR [H]

Synonym: BDI_1253

Alternate gene names: 150007893

Gene position: 1453871-1452450 (Counterclockwise)

Preceding gene: 150007894

Following gene: 150007891

Centisome position: 30.22

GC content: 38.47

Gene sequence:

>1422_bases
ATGAAAAAAGAAATCCTATATCAAGAAATAGCGAGAACTATTGCCTGTCAAATTAAGAAAGGCGTGTGGAAAGCTGGTGA
GAAACTACCTTCTTTACGCACTATTAGCAATGAAAATGGTGTAAGTCTTAATACGGCAATTCAGGCATATTATGAATTGG
AAAAAGACGGATTTATAATATCACGCCCAAAATCAGGGTATATTGTCAATTACAAACCCATACGCCTATCTGTTCCAGCG
ACAACACAACCGTCTGTAAAGCCTGAGAGCAAAGAGGTGGTAGATTTGATTGCTGACGTATACAGCTCGTTAGAAATAGG
AGATAAATCGATCACTCGATTTTCATTAGGAATGCCCGAAGATATTTTATTACCAATTGCAAAACTTAATAAAGAACTTA
TAAGAGCTATGCAGGCACTTCCGGGTAATGGAACCCGGTATGATGAAACACAGGGAAATATGCGATTACGTAAATCTATA
GCTCGTTTTACGTATAGTTGGAAGGGAAACTTGACAGAAGATGATATAGTGACAACTGCCGGAGTTACTAATGCGGTTGC
TTTAGCTTTATCTGTAATTACTAAGGTAGGAGATACTATTGCGGTTGAAAGTCCGGTCTATTTTGGAATGTTACAATTAG
CCAATAGTATGGGGTTACGTATATTGGAATTACCTACCAATCCAGTAACAGGGATTGATCCAGATGCGCTGAAAAAAGTT
TTACCACAAATTAAAGCTTGCCTGCTTATAAGCAACTTTAATAACCCATTGGGAAGTTGTATGCCTGATGAACATAAAAG
GGTAGTTGTTGATATGCTGGCCGGATATGATATACCTTTGATCGAGGATGATTTATATGGTGATTTATTTTTTGGAAATT
CACGTCCTAAGCCCTGCAAGGCTTTTGACAAGAAGGGGCTTGTTTTATGGTGTGGTGCGGTATCTAAAACATTAGCGCCG
GGGTATCGGGTAGGATGGATTGCTCCCGGCAAATTTAAACATGCTATTATTCGCCAAAAGAATATTCACCTTATTTCTAC
GCCTGCGCTTAATCAAGAAGCGGTTGCCAATTTCATGGAGAATGACAGATACGAAAACCATTTACGTAAACTGCGACAAG
AATTATACGCAAACAGTATTCATTTTGCCCATTCCATCATGGATTACTTCCCCGAGAATACAAAAATTGTTACTCCACAA
GGAGGATTTATGCTTTGGGTGGAATTAGACAAACAGATTGATACAACAGAACTTTATTATCGGGCTATGCAGCGAAAAAT
AAGCATAGCCCCCGGACGTATGTTTACATTACAAGAGCAATATACCAATTGTATGCGTTTAAGCTATGGACAACGATGGA
CTCCACTTCTTGAAGAACGCTTAAAACAATTGGGGGATATAATTAAAAATCACTTTAACTGA

Upstream 100 bases:

>100_bases
AAGCAATACAAAAGTCATTCTGTAAAAGTATTTCAAAGTCCAAAACAGATACAGACACGATTTTTGTATATTTGCAGGAT
ACAGATAACACCTAACAAGT

Downstream 100 bases:

>100_bases
TGTATGTATTCTTTTAGTACTTCCCCTATTACTTGAAGTCCTTTCATGATTCTATCTTCTGGCATATTAGAGTAATTTAT
TCTAAAAGTATTTTCTTTGT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 473; Mature: 473

Protein sequence:

>473_residues
MKKEILYQEIARTIACQIKKGVWKAGEKLPSLRTISNENGVSLNTAIQAYYELEKDGFIISRPKSGYIVNYKPIRLSVPA
TTQPSVKPESKEVVDLIADVYSSLEIGDKSITRFSLGMPEDILLPIAKLNKELIRAMQALPGNGTRYDETQGNMRLRKSI
ARFTYSWKGNLTEDDIVTTAGVTNAVALALSVITKVGDTIAVESPVYFGMLQLANSMGLRILELPTNPVTGIDPDALKKV
LPQIKACLLISNFNNPLGSCMPDEHKRVVVDMLAGYDIPLIEDDLYGDLFFGNSRPKPCKAFDKKGLVLWCGAVSKTLAP
GYRVGWIAPGKFKHAIIRQKNIHLISTPALNQEAVANFMENDRYENHLRKLRQELYANSIHFAHSIMDYFPENTKIVTPQ
GGFMLWVELDKQIDTTELYYRAMQRKISIAPGRMFTLQEQYTNCMRLSYGQRWTPLLEERLKQLGDIIKNHFN

Sequences:

>Translated_473_residues
MKKEILYQEIARTIACQIKKGVWKAGEKLPSLRTISNENGVSLNTAIQAYYELEKDGFIISRPKSGYIVNYKPIRLSVPA
TTQPSVKPESKEVVDLIADVYSSLEIGDKSITRFSLGMPEDILLPIAKLNKELIRAMQALPGNGTRYDETQGNMRLRKSI
ARFTYSWKGNLTEDDIVTTAGVTNAVALALSVITKVGDTIAVESPVYFGMLQLANSMGLRILELPTNPVTGIDPDALKKV
LPQIKACLLISNFNNPLGSCMPDEHKRVVVDMLAGYDIPLIEDDLYGDLFFGNSRPKPCKAFDKKGLVLWCGAVSKTLAP
GYRVGWIAPGKFKHAIIRQKNIHLISTPALNQEAVANFMENDRYENHLRKLRQELYANSIHFAHSIMDYFPENTKIVTPQ
GGFMLWVELDKQIDTTELYYRAMQRKISIAPGRMFTLQEQYTNCMRLSYGQRWTPLLEERLKQLGDIIKNHFN
>Mature_473_residues
MKKEILYQEIARTIACQIKKGVWKAGEKLPSLRTISNENGVSLNTAIQAYYELEKDGFIISRPKSGYIVNYKPIRLSVPA
TTQPSVKPESKEVVDLIADVYSSLEIGDKSITRFSLGMPEDILLPIAKLNKELIRAMQALPGNGTRYDETQGNMRLRKSI
ARFTYSWKGNLTEDDIVTTAGVTNAVALALSVITKVGDTIAVESPVYFGMLQLANSMGLRILELPTNPVTGIDPDALKKV
LPQIKACLLISNFNNPLGSCMPDEHKRVVVDMLAGYDIPLIEDDLYGDLFFGNSRPKPCKAFDKKGLVLWCGAVSKTLAP
GYRVGWIAPGKFKHAIIRQKNIHLISTPALNQEAVANFMENDRYENHLRKLRQELYANSIHFAHSIMDYFPENTKIVTPQ
GGFMLWVELDKQIDTTELYYRAMQRKISIAPGRMFTLQEQYTNCMRLSYGQRWTPLLEERLKQLGDIIKNHFN

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI4507369, Length=228, Percent_Identity=28.0701754385965, Blast_Score=98, Evalue=2e-20,
Organism=Homo sapiens, GI7705897, Length=398, Percent_Identity=21.356783919598, Blast_Score=85, Evalue=2e-16,
Organism=Homo sapiens, GI33469970, Length=398, Percent_Identity=21.356783919598, Blast_Score=85, Evalue=2e-16,
Organism=Escherichia coli, GI1790797, Length=465, Percent_Identity=37.2043010752688, Blast_Score=318, Evalue=6e-88,
Organism=Escherichia coli, GI1787710, Length=476, Percent_Identity=35.2941176470588, Blast_Score=305, Evalue=6e-84,
Organism=Caenorhabditis elegans, GI17567663, Length=308, Percent_Identity=21.1038961038961, Blast_Score=71, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6322401, Length=284, Percent_Identity=21.830985915493, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI18859735, Length=260, Percent_Identity=25, Blast_Score=82, Evalue=7e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53326; Mature: 53326

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKEILYQEIARTIACQIKKGVWKAGEKLPSLRTISNENGVSLNTAIQAYYELEKDGFII
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCEEE
SRPKSGYIVNYKPIRLSVPATTQPSVKPESKEVVDLIADVYSSLEIGDKSITRFSLGMPE
ECCCCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHEEEECCCCH
DILLPIAKLNKELIRAMQALPGNGTRYDETQGNMRLRKSIARFTYSWKGNLTEDDIVTTA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHEEECCCCCCCCCCEECC
GVTNAVALALSVITKVGDTIAVESPVYFGMLQLANSMGLRILELPTNPVTGIDPDALKKV
CHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHH
LPQIKACLLISNFNNPLGSCMPDEHKRVVVDMLAGYDIPLIEDDLYGDLFFGNSRPKPCK
HHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCCEEEECCCCCCCCH
AFDKKGLVLWCGAVSKTLAPGYRVGWIAPGKFKHAIIRQKNIHLISTPALNQEAVANFME
HHCCCCEEEEECHHHHHCCCCCEEEEECCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHH
NDRYENHLRKLRQELYANSIHFAHSIMDYFPENTKIVTPQGGFMLWVELDKQIDTTELYY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEEEECCCCCHHHHHH
RAMQRKISIAPGRMFTLQEQYTNCMRLSYGQRWTPLLEERLKQLGDIIKNHFN
HHHHHHHCCCCCCEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKEILYQEIARTIACQIKKGVWKAGEKLPSLRTISNENGVSLNTAIQAYYELEKDGFII
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCEEE
SRPKSGYIVNYKPIRLSVPATTQPSVKPESKEVVDLIADVYSSLEIGDKSITRFSLGMPE
ECCCCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHEEEECCCCH
DILLPIAKLNKELIRAMQALPGNGTRYDETQGNMRLRKSIARFTYSWKGNLTEDDIVTTA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHEEECCCCCCCCCCEECC
GVTNAVALALSVITKVGDTIAVESPVYFGMLQLANSMGLRILELPTNPVTGIDPDALKKV
CHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHH
LPQIKACLLISNFNNPLGSCMPDEHKRVVVDMLAGYDIPLIEDDLYGDLFFGNSRPKPCK
HHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCCEEEECCCCCCCCH
AFDKKGLVLWCGAVSKTLAPGYRVGWIAPGKFKHAIIRQKNIHLISTPALNQEAVANFME
HHCCCCEEEEECHHHHHCCCCCEEEEECCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHH
NDRYENHLRKLRQELYANSIHFAHSIMDYFPENTKIVTPQGGFMLWVELDKQIDTTELYY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEEEECCCCCHHHHHH
RAMQRKISIAPGRMFTLQEQYTNCMRLSYGQRWTPLLEERLKQLGDIIKNHFN
HHHHHHHCCCCCCEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]