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The map label for this gene is ydcR [C]

Identifier: 150007892

GI number: 150007892

Start: 1451260

End: 1452462

Strand: Direct

Name: ydcR [C]

Synonym: BDI_1252

Alternate gene names: 150007892

Gene position: 1451260-1452462 (Clockwise)

Preceding gene: 150007890

Following gene: 150007898

Centisome position: 30.16

GC content: 35.74

Gene sequence:

>1203_bases
ATGATTATGAAGTTGAAATTTGCCAAAAGAATGTCTTATATAAAGGCTTCGGAAATAAGAGAAATACTCAAAGTTACAGA
ACGGGAAGATGTTATTTCATTTGCTGGTGGACTACCTGCCCCTGAGCTATTCCCCATAGATGAAATTAACAAAATGAATC
AGGTCGTTTTGCAAGAAGCAGGAGCAAAAGCTCTTCAATATACGACTACTGAAGGGTATTATCCTTTACGTGAATGGATT
GCCAAACGAATGAATGAACGCTTAGGGACATCGTTCGATAAGGATAATATTCTTATAACTCACGGTTCGCAACAAGGATT
AGATTTATCCGGAAAAGTATTTCTGGACGATGGTGATATCGTATTGTGTGAAAGCCCCACCTATTTAGCAGCAATTAGCG
CATTCAAATCATATGGGAGTGGCTTCATTGAAATTCCAACAGATGAAGAAGGCATGGATATGGCTACTTTGGAAGAGGTA
CTGAATAATACTCAAAATATAAAACTAATATATGTAATACCAACCTTTCAAAATCCCACTGGAAAAACATGGAGTTTGGA
AAGACGAAAAAAACTGGCTGAACTATCTGCTTTATATGATATTCCTGTTATTGAAGATAACCCTTATGGAGAATTAAGGT
TTGAAGGAGAGTCTTTACCCTCTATAAAGTCTTTTGATAAGGTAGGTAATATCTTATGCACTGGTAGTTTTTCTAAAATC
TTTTGTCCGGGCTTTCGGATTGGGTGGATTGCAGGTGATAAAGATATTATCCGCAAGTATGTGTTAGTTAAGCAGGGCAC
TGATTTGCAGTGTAACACAATAGCTCAAATGACTATTGCCGAATATCTAAAACGATATGATATTGATGAGCATATTAGCA
AAATAGTAGAAGTCTACAGAAAACGCAGAGATATAGCTTTAGAATGTATTGAACGCTATTTTCCTAATGACATAAAATAT
ACTCATCCTCAAGGCGGGTTATTTACTTGGATTGAATTACCCGAAAATATTTCAGCGCATGACATCCTGCAAAAATGCAT
TGAACAGAAAATAGCCTTTGTACCCGGCAGTTCATTTTATCCTGTTGAGCACAAAGAAAATACTTTTAGAATAAATTACT
CTAATATGCCAGAAGATAGAATCATGAAAGGACTTCAAGTAATAGGGGAAGTACTAAAAGAATACATACATCAGTTAAAG
TGA

Upstream 100 bases:

>100_bases
GTTCCGAAAATCTGTACCCGCTGATATTGTGCAAATTGTATCTGTTCTCATTTATCTATTATGCTTTACTTTGCATTATT
TTAGTTTTCAAATATATTTA

Downstream 100 bases:

>100_bases
TTTTTAATTATATCCCCCAATTGTTTTAAGCGTTCTTCAAGAAGTGGAGTCCATCGTTGTCCATAGCTTAAACGCATACA
ATTGGTATATTGCTCTTGTA

Product: aminotransferase

Products: NA

Alternate protein names: AspB-1 [H]

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MIMKLKFAKRMSYIKASEIREILKVTEREDVISFAGGLPAPELFPIDEINKMNQVVLQEAGAKALQYTTTEGYYPLREWI
AKRMNERLGTSFDKDNILITHGSQQGLDLSGKVFLDDGDIVLCESPTYLAAISAFKSYGSGFIEIPTDEEGMDMATLEEV
LNNTQNIKLIYVIPTFQNPTGKTWSLERRKKLAELSALYDIPVIEDNPYGELRFEGESLPSIKSFDKVGNILCTGSFSKI
FCPGFRIGWIAGDKDIIRKYVLVKQGTDLQCNTIAQMTIAEYLKRYDIDEHISKIVEVYRKRRDIALECIERYFPNDIKY
THPQGGLFTWIELPENISAHDILQKCIEQKIAFVPGSSFYPVEHKENTFRINYSNMPEDRIMKGLQVIGEVLKEYIHQLK

Sequences:

>Translated_400_residues
MIMKLKFAKRMSYIKASEIREILKVTEREDVISFAGGLPAPELFPIDEINKMNQVVLQEAGAKALQYTTTEGYYPLREWI
AKRMNERLGTSFDKDNILITHGSQQGLDLSGKVFLDDGDIVLCESPTYLAAISAFKSYGSGFIEIPTDEEGMDMATLEEV
LNNTQNIKLIYVIPTFQNPTGKTWSLERRKKLAELSALYDIPVIEDNPYGELRFEGESLPSIKSFDKVGNILCTGSFSKI
FCPGFRIGWIAGDKDIIRKYVLVKQGTDLQCNTIAQMTIAEYLKRYDIDEHISKIVEVYRKRRDIALECIERYFPNDIKY
THPQGGLFTWIELPENISAHDILQKCIEQKIAFVPGSSFYPVEHKENTFRINYSNMPEDRIMKGLQVIGEVLKEYIHQLK
>Mature_400_residues
MIMKLKFAKRMSYIKASEIREILKVTEREDVISFAGGLPAPELFPIDEINKMNQVVLQEAGAKALQYTTTEGYYPLREWI
AKRMNERLGTSFDKDNILITHGSQQGLDLSGKVFLDDGDIVLCESPTYLAAISAFKSYGSGFIEIPTDEEGMDMATLEEV
LNNTQNIKLIYVIPTFQNPTGKTWSLERRKKLAELSALYDIPVIEDNPYGELRFEGESLPSIKSFDKVGNILCTGSFSKI
FCPGFRIGWIAGDKDIIRKYVLVKQGTDLQCNTIAQMTIAEYLKRYDIDEHISKIVEVYRKRRDIALECIERYFPNDIKY
THPQGGLFTWIELPENISAHDILQKCIEQKIAFVPGSSFYPVEHKENTFRINYSNMPEDRIMKGLQVIGEVLKEYIHQLK

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=410, Percent_Identity=28.2926829268293, Blast_Score=176, Evalue=3e-44,
Organism=Homo sapiens, GI33469970, Length=410, Percent_Identity=28.2926829268293, Blast_Score=176, Evalue=3e-44,
Organism=Homo sapiens, GI95147551, Length=400, Percent_Identity=25.25, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI169881279, Length=400, Percent_Identity=25.25, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI56713256, Length=355, Percent_Identity=25.9154929577465, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI56713254, Length=355, Percent_Identity=25.9154929577465, Blast_Score=71, Evalue=2e-12,
Organism=Escherichia coli, GI1787710, Length=379, Percent_Identity=29.287598944591, Blast_Score=190, Evalue=2e-49,
Organism=Escherichia coli, GI1790797, Length=384, Percent_Identity=30.46875, Blast_Score=165, Evalue=5e-42,
Organism=Escherichia coli, GI1788722, Length=348, Percent_Identity=25.2873563218391, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI48994949, Length=387, Percent_Identity=26.3565891472868, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786816, Length=354, Percent_Identity=21.7514124293785, Blast_Score=72, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71994476, Length=391, Percent_Identity=25.0639386189258, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71994472, Length=391, Percent_Identity=25.0639386189258, Blast_Score=74, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6321236, Length=494, Percent_Identity=22.6720647773279, Blast_Score=129, Evalue=1e-30,
Organism=Saccharomyces cerevisiae, GI6321000, Length=441, Percent_Identity=24.4897959183673, Blast_Score=106, Evalue=6e-24,
Organism=Saccharomyces cerevisiae, GI6321929, Length=472, Percent_Identity=22.0338983050847, Blast_Score=93, Evalue=8e-20,
Organism=Drosophila melanogaster, GI21356535, Length=395, Percent_Identity=25.0632911392405, Blast_Score=133, Evalue=3e-31,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: NA

Molecular weight: Translated: 45775; Mature: 45775

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMKLKFAKRMSYIKASEIREILKVTEREDVISFAGGLPAPELFPIDEINKMNQVVLQEA
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC
GAKALQYTTTEGYYPLREWIAKRMNERLGTSFDKDNILITHGSQQGLDLSGKVFLDDGDI
CCHHEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEEECCCE
VLCESPTYLAAISAFKSYGSGFIEIPTDEEGMDMATLEEVLNNTQNIKLIYVIPTFQNPT
EEECCCHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCC
GKTWSLERRKKLAELSALYDIPVIEDNPYGELRFEGESLPSIKSFDKVGNILCTGSFSKI
CCCCCHHHHHHHHHHHHHHCCCEECCCCCCCEEECCCCCCCHHHHHHHCCEEEECCCCCE
FCPGFRIGWIAGDKDIIRKYVLVKQGTDLQCNTIAQMTIAEYLKRYDIDEHISKIVEVYR
ECCCCEEEEEECCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
KRRDIALECIERYFPNDIKYTHPQGGLFTWIELPENISAHDILQKCIEQKIAFVPGSSFY
HHHHHHHHHHHHHCCCCCEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHEECCCCCCC
PVEHKENTFRINYSNMPEDRIMKGLQVIGEVLKEYIHQLK
CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIMKLKFAKRMSYIKASEIREILKVTEREDVISFAGGLPAPELFPIDEINKMNQVVLQEA
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC
GAKALQYTTTEGYYPLREWIAKRMNERLGTSFDKDNILITHGSQQGLDLSGKVFLDDGDI
CCHHEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEEECCCE
VLCESPTYLAAISAFKSYGSGFIEIPTDEEGMDMATLEEVLNNTQNIKLIYVIPTFQNPT
EEECCCHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCC
GKTWSLERRKKLAELSALYDIPVIEDNPYGELRFEGESLPSIKSFDKVGNILCTGSFSKI
CCCCCHHHHHHHHHHHHHHCCCEECCCCCCCEEECCCCCCCHHHHHHHCCEEEECCCCCE
FCPGFRIGWIAGDKDIIRKYVLVKQGTDLQCNTIAQMTIAEYLKRYDIDEHISKIVEVYR
ECCCCEEEEEECCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
KRRDIALECIERYFPNDIKYTHPQGGLFTWIELPENISAHDILQKCIEQKIAFVPGSSFY
HHHHHHHHHHHHHCCCCCEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHEECCCCCCC
PVEHKENTFRINYSNMPEDRIMKGLQVIGEVLKEYIHQLK
CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8899719; 11427726 [H]