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The map label for this gene is yiaD [H]

Identifier: 150007860

GI number: 150007860

Start: 1413589

End: 1414272

Strand: Reverse

Name: yiaD [H]

Synonym: BDI_1220

Alternate gene names: 150007860

Gene position: 1414272-1413589 (Counterclockwise)

Preceding gene: 150007861

Following gene: 150007859

Centisome position: 29.39

GC content: 50.0

Gene sequence:

>684_bases
ATGATGAGGAACATTAAATTATTATCTGTTTTACTGCTATGTATGGCAGTGGTGTTTACGAGTTGCGGAACGTGGAATAA
CACGGCGAAGGGTACGGCGATCGGTGTAGGCGGTGGTGCCGCTGTCGGAGCTGGTGTTGGTGCCTTGGCCGGAAATACCG
CATTGGGTGCCGTGATCGGTGCGGCCGTAGGTGGTACAGCCGGTGCGTTAATCGGTAAGAAAATGGATAAGCAGAAGAAG
GAGCTGGAAGCTACCCTGCCTGAGGACACGAAGATCGAGAGCGTGAACAATGGTGAGGCCTTGAAGGTTACTTTTGACTC
CGGTATCTTGTTTGCCACGAACTCAAGTACGTTGAGCGACGCTTCCAAGAGTGCCTTGCGTAACTTCGCTACCAGTTTGA
AGGCCAATCCGGATACGGATATCCGAATCATCGGCTTTACGGATAACACCGGTAAGGTGGATTATAACCAGACCTTGTCC
GAGAAACGTGCGAAGAGCGTTTACGATTACCTGATGATGCAGGGGGTAAGCACGGATCGTATGGTTTATGAAGGTAAAGG
TATACATGATCCTGTGGCTAGCAATGACACTCCCGAGGGTCGTTCGTTGAACCGTCGTGTTGAGATCGTGATCTTGGCTA
ATCAGAAAATGATCCAAGAGGCTCAACAAGGAACGCTTCGATAA

Upstream 100 bases:

>100_bases
ACTTTTATAGTACAAGGAGAACTTGAATATTGCGATTCGATCAACATGTTTGATTGATATTTGTTATATATATAAAGTTG
TTTAAGTGAAATTGTAGAAG

Downstream 100 bases:

>100_bases
GTTTTTTTAAGCTATCCCTGCCGGAAGCGGACAGGTTATAGGGTATGAATTGGGGGACTGTCTTTTCGGGATAGTCCCTT
TTTTGTTTAAATCGCAGGAT

Product: OmpA family outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MMRNIKLLSVLLLCMAVVFTSCGTWNNTAKGTAIGVGGGAAVGAGVGALAGNTALGAVIGAAVGGTAGALIGKKMDKQKK
ELEATLPEDTKIESVNNGEALKVTFDSGILFATNSSTLSDASKSALRNFATSLKANPDTDIRIIGFTDNTGKVDYNQTLS
EKRAKSVYDYLMMQGVSTDRMVYEGKGIHDPVASNDTPEGRSLNRRVEIVILANQKMIQEAQQGTLR

Sequences:

>Translated_227_residues
MMRNIKLLSVLLLCMAVVFTSCGTWNNTAKGTAIGVGGGAAVGAGVGALAGNTALGAVIGAAVGGTAGALIGKKMDKQKK
ELEATLPEDTKIESVNNGEALKVTFDSGILFATNSSTLSDASKSALRNFATSLKANPDTDIRIIGFTDNTGKVDYNQTLS
EKRAKSVYDYLMMQGVSTDRMVYEGKGIHDPVASNDTPEGRSLNRRVEIVILANQKMIQEAQQGTLR
>Mature_227_residues
MMRNIKLLSVLLLCMAVVFTSCGTWNNTAKGTAIGVGGGAAVGAGVGALAGNTALGAVIGAAVGGTAGALIGKKMDKQKK
ELEATLPEDTKIESVNNGEALKVTFDSGILFATNSSTLSDASKSALRNFATSLKANPDTDIRIIGFTDNTGKVDYNQTLS
EKRAKSVYDYLMMQGVSTDRMVYEGKGIHDPVASNDTPEGRSLNRRVEIVILANQKMIQEAQQGTLR

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=217, Percent_Identity=35.9447004608295, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1788957, Length=104, Percent_Identity=40.3846153846154, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787191, Length=132, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 23848; Mature: 23848

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00107 PROTEIN_KINASE_ATP ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRNIKLLSVLLLCMAVVFTSCGTWNNTAKGTAIGVGGGAAVGAGVGALAGNTALGAVIG
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCHHHHCCHHHHCCCHHHHHHHH
AAVGGTAGALIGKKMDKQKKELEATLPEDTKIESVNNGEALKVTFDSGILFATNSSTLSD
HHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEECCCEEEEECCCHHHH
ASKSALRNFATSLKANPDTDIRIIGFTDNTGKVDYNQTLSEKRAKSVYDYLMMQGVSTDR
HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
MVYEGKGIHDPVASNDTPEGRSLNRRVEIVILANQKMIQEAQQGTLR
EEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHCCCC
>Mature Secondary Structure
MMRNIKLLSVLLLCMAVVFTSCGTWNNTAKGTAIGVGGGAAVGAGVGALAGNTALGAVIG
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCHHHHCCHHHHCCCHHHHHHHH
AAVGGTAGALIGKKMDKQKKELEATLPEDTKIESVNNGEALKVTFDSGILFATNSSTLSD
HHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEECCCEEEEECCCHHHH
ASKSALRNFATSLKANPDTDIRIIGFTDNTGKVDYNQTLSEKRAKSVYDYLMMQGVSTDR
HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
MVYEGKGIHDPVASNDTPEGRSLNRRVEIVILANQKMIQEAQQGTLR
EEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]