Click here to switch to the map view.

The map label for this gene is 150007820

Identifier: 150007820

GI number: 150007820

Start: 1372739

End: 1374964

Strand: Direct

Name: 150007820

Synonym: BDI_1178

Alternate gene names: NA

Gene position: 1372739-1374964 (Clockwise)

Preceding gene: 150007814

Following gene: 150007821

Centisome position: 28.53

GC content: 41.87

Gene sequence:

>2226_bases
ATGGAAACAGAGAAACAGTTGATATCCCATTTATACCAAAACAAAGAAAATGGAAAATGGATAATACAAACCAACGATGA
ACATCAAAGGGGTGTTGCAGAAATGGCAACCTCCTTTTCTGGACTGTTCGGACTTCCATCTTGGGGGCATACGCTTGGAA
TGCTTCACGACAAAGGAAAAGAGCGTGATGCATTTCAGCAATATATCCGTACGACAAGCGGTCTGCCTGTGACTGACGAA
AAATCGTATGGAGAGCATCATCATGCGTTTGTAGGTGGAATATTGGTAACGAACCTTATGGGGAAGAGTGTATTCAATCT
TCTTGCCAACCAGATAATCTCTCATCATACAGGCCTACATGATTATGTAGATGCGGAGAGCGTCATAGAGAAAAGGCAAC
TTCCCGAAGAGATAAACAAAGGGGACATAGCTCTGAATATACCCCAGTTGAGAAAAGAACTTCTTGAATCTCCTTTTTCT
AAACTTAAGGTGGACATGAAGCATTTTCATCACCTTTCCCGCATGCTTTTTTCCTGTCTTGTGGATGCCGACAGACTCAA
TACAGAGCAATTTATGGATGTAGAATCGTGGGAAAAACGGGGATGCTCGTCTACACTCACTGACTTATTGCCAAAATTGG
AGGCGCATTTACGTGAACTGCAATTGTATGCACCCGATACAGAAGTGAACCACATTCGCAAGAAAGTACAGGAACGATGC
CGTAAAGCTTCTTCTGAAGAGAAAGGATTCTATAGCCTTACGGTACCAACGGGAGGCGGCAAGACTCTTTCATCGTTGTT
GTGGGCCATGAAGCATGCTGTAAATCACGGTATGAATCGTATTATCATTGCCATCCCATACACTAGTATTATTGTGCAGA
CGGCAGGCCTCTTGAAAGAAATCTTCGGCGAAGAGCACGTACTGGAGCATCATAGTAACTTTAATCCTGATGAGATAAAG
AATGAAGAGGTACGTGAGAAGGCAAAGCTGGCCACGGAAAACTGGGATTATCCGATTATCGTTACGACCAATGTTCAGCT
GTTTGAGTCAATGTTTAGCAACAAACCGTCCGATTGCCGTAAATTGCACAATATCGTGAATTCAGTTCTTATTTTGGATG
AAGCGCAGACATTGCCGACTGATTTCTTACAACCGATAGTGGATGCACTTAAAGCATATCAGAAAATATTCGGAGTGTCG
GTACTGTTTACCACTGCCAGTCAGCCGGTACTTAGCGGACTGATAGAAGGAACTAATCCTAAGGCCAATTTTGAGGGAAT
AGACCGTATTATTGAAATCATACCGAATGAGTTTGCTTTGCATGACAAGCTTCGTCGTGTGAAGTTAGTAATAGACAACA
CAGGAAAGACATACGATGAGATTGCCGCCGAAGTTGCTATATATAATAAGGTATTATGTATCGTAAATACCCGAAAGGAT
GCCAAGGAACTGTATGACCGTTTACCTAATGAAGGAATAAAGCTCCATCTATCGAGAATGATGTGTCCCGCCCATATCAG
TGAAACCATACGGAAGGTCAAGGCATTGCTGAAAGATAAATCACATCCGATTGTCAGAGTGATAGCTACCCAGCTTGTAG
AGGCAGGGGTGGATATAGATTTCCCTGTTGTATTTCGACAGGAATCAGGTCTTGACTCTATTTTACAGGCAGCGGGGCGT
TGTAACCGTGAAGGAAGAAATACTGTTGGTACCACATTTGTGTTCAGTCTCGCCGCAGAGAAACGTATTCCATTTGGGGC
AATGAAGGCTGCAAACAATGCACGATTGAATTTGCCTGCAAATAGTGATTGGTTTGACCCTTCTACGATGACAGAGTATT
TTTATCAGTTGTATTGCAGGAAAAACACGTTTGACGATAAGGATATGAAACATTATCTTTATAACCCTAATGAGTTATGT
TTTGAAACGGCATCAAAGAAGTTCAGATTGATTGATGATGATTGTATGAATATCATTGTAAATTGGGGGAACAGCATGGA
GCTTGTGGAAAAACTGAAAGAATCTGGCTGTACCTATCCCTTGATGAAGCAACTGGCTAAATTTACAGTAGGCGTTCATA
GTTCCGATTTTGACAAGTTGGTCAGCTATGGTGCTATTGAAGAAGTATTAGAGGGTATCTATGTGTTGACAGACAGGGTA
CAGTATGACAAAAATACGGGTCTTAGCCTTGATAACCACTGGATGGAAGAGCTATTAATGATATAA

Upstream 100 bases:

>100_bases
TAATACCAATGGAGAATTTTGTTTTGCCATGCCGCGAAGATACGGATATTTCGATTTATTTTCCTACTTTTGTAAGGTAT
AACCTTATGAATCTAATCAA

Downstream 100 bases:

>100_bases
AAAAAATGAATAATATGGACTATACAGATAAAGAATATTGCTTGGAAGTATGGGGTGACTGGGCTTGTTTCAGTCGCCCT
GAATTGAAAGTAGAGCGTGT

Product: putative helicase

Products: NA

Alternate protein names: Helicase; CRISPR-Associated Helicase Cas3 Family Protein Protein; ATP-Dependent RNA Helicase; CRISPR-Associated Helicase Cas3 Domain Protein; CRISPR-Associated HD Domain Protein; CRISPR-Associated Helicase Cas3 Domain-Containing Protein; CRISPR-Associated Helicase; DEAD/DEAH Box Helicase Domain-Containing Protein; Helicases; CRISPR-Associated Helicase Cas3 Core; Crispr-Associated Helicase Cas3 Domain Protein; Crispr-Associated Hd Domain Protein; CRISPR-Associated Helicase Cas3 Family; Cas3 Family CRISPR-Associated Helicase; Helicase-Like Protein; Helicases-Like Protein; CRISPR-Associated Helicase Cas3 Protein; CRISPR-Associated HD Domain-Containing Protein; ATP-Dependent RNA Helicase SrmB

Number of amino acids: Translated: 741; Mature: 741

Protein sequence:

>741_residues
METEKQLISHLYQNKENGKWIIQTNDEHQRGVAEMATSFSGLFGLPSWGHTLGMLHDKGKERDAFQQYIRTTSGLPVTDE
KSYGEHHHAFVGGILVTNLMGKSVFNLLANQIISHHTGLHDYVDAESVIEKRQLPEEINKGDIALNIPQLRKELLESPFS
KLKVDMKHFHHLSRMLFSCLVDADRLNTEQFMDVESWEKRGCSSTLTDLLPKLEAHLRELQLYAPDTEVNHIRKKVQERC
RKASSEEKGFYSLTVPTGGGKTLSSLLWAMKHAVNHGMNRIIIAIPYTSIIVQTAGLLKEIFGEEHVLEHHSNFNPDEIK
NEEVREKAKLATENWDYPIIVTTNVQLFESMFSNKPSDCRKLHNIVNSVLILDEAQTLPTDFLQPIVDALKAYQKIFGVS
VLFTTASQPVLSGLIEGTNPKANFEGIDRIIEIIPNEFALHDKLRRVKLVIDNTGKTYDEIAAEVAIYNKVLCIVNTRKD
AKELYDRLPNEGIKLHLSRMMCPAHISETIRKVKALLKDKSHPIVRVIATQLVEAGVDIDFPVVFRQESGLDSILQAAGR
CNREGRNTVGTTFVFSLAAEKRIPFGAMKAANNARLNLPANSDWFDPSTMTEYFYQLYCRKNTFDDKDMKHYLYNPNELC
FETASKKFRLIDDDCMNIIVNWGNSMELVEKLKESGCTYPLMKQLAKFTVGVHSSDFDKLVSYGAIEEVLEGIYVLTDRV
QYDKNTGLSLDNHWMEELLMI

Sequences:

>Translated_741_residues
METEKQLISHLYQNKENGKWIIQTNDEHQRGVAEMATSFSGLFGLPSWGHTLGMLHDKGKERDAFQQYIRTTSGLPVTDE
KSYGEHHHAFVGGILVTNLMGKSVFNLLANQIISHHTGLHDYVDAESVIEKRQLPEEINKGDIALNIPQLRKELLESPFS
KLKVDMKHFHHLSRMLFSCLVDADRLNTEQFMDVESWEKRGCSSTLTDLLPKLEAHLRELQLYAPDTEVNHIRKKVQERC
RKASSEEKGFYSLTVPTGGGKTLSSLLWAMKHAVNHGMNRIIIAIPYTSIIVQTAGLLKEIFGEEHVLEHHSNFNPDEIK
NEEVREKAKLATENWDYPIIVTTNVQLFESMFSNKPSDCRKLHNIVNSVLILDEAQTLPTDFLQPIVDALKAYQKIFGVS
VLFTTASQPVLSGLIEGTNPKANFEGIDRIIEIIPNEFALHDKLRRVKLVIDNTGKTYDEIAAEVAIYNKVLCIVNTRKD
AKELYDRLPNEGIKLHLSRMMCPAHISETIRKVKALLKDKSHPIVRVIATQLVEAGVDIDFPVVFRQESGLDSILQAAGR
CNREGRNTVGTTFVFSLAAEKRIPFGAMKAANNARLNLPANSDWFDPSTMTEYFYQLYCRKNTFDDKDMKHYLYNPNELC
FETASKKFRLIDDDCMNIIVNWGNSMELVEKLKESGCTYPLMKQLAKFTVGVHSSDFDKLVSYGAIEEVLEGIYVLTDRV
QYDKNTGLSLDNHWMEELLMI
>Mature_741_residues
METEKQLISHLYQNKENGKWIIQTNDEHQRGVAEMATSFSGLFGLPSWGHTLGMLHDKGKERDAFQQYIRTTSGLPVTDE
KSYGEHHHAFVGGILVTNLMGKSVFNLLANQIISHHTGLHDYVDAESVIEKRQLPEEINKGDIALNIPQLRKELLESPFS
KLKVDMKHFHHLSRMLFSCLVDADRLNTEQFMDVESWEKRGCSSTLTDLLPKLEAHLRELQLYAPDTEVNHIRKKVQERC
RKASSEEKGFYSLTVPTGGGKTLSSLLWAMKHAVNHGMNRIIIAIPYTSIIVQTAGLLKEIFGEEHVLEHHSNFNPDEIK
NEEVREKAKLATENWDYPIIVTTNVQLFESMFSNKPSDCRKLHNIVNSVLILDEAQTLPTDFLQPIVDALKAYQKIFGVS
VLFTTASQPVLSGLIEGTNPKANFEGIDRIIEIIPNEFALHDKLRRVKLVIDNTGKTYDEIAAEVAIYNKVLCIVNTRKD
AKELYDRLPNEGIKLHLSRMMCPAHISETIRKVKALLKDKSHPIVRVIATQLVEAGVDIDFPVVFRQESGLDSILQAAGR
CNREGRNTVGTTFVFSLAAEKRIPFGAMKAANNARLNLPANSDWFDPSTMTEYFYQLYCRKNTFDDKDMKHYLYNPNELC
FETASKKFRLIDDDCMNIIVNWGNSMELVEKLKESGCTYPLMKQLAKFTVGVHSSDFDKLVSYGAIEEVLEGIYVLTDRV
QYDKNTGLSLDNHWMEELLMI

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 84264; Mature: 84264

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METEKQLISHLYQNKENGKWIIQTNDEHQRGVAEMATSFSGLFGLPSWGHTLGMLHDKGK
CCCHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
ERDAFQQYIRTTSGLPVTDEKSYGEHHHAFVGGILVTNLMGKSVFNLLANQIISHHTGLH
CHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
DYVDAESVIEKRQLPEEINKGDIALNIPQLRKELLESPFSKLKVDMKHFHHLSRMLFSCL
HHCCHHHHHHHHHCHHHCCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
VDADRLNTEQFMDVESWEKRGCSSTLTDLLPKLEAHLRELQLYAPDTEVNHIRKKVQERC
HHHHHCCHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
RKASSEEKGFYSLTVPTGGGKTLSSLLWAMKHAVNHGMNRIIIAIPYTSIIVQTAGLLKE
HHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHH
IFGEEHVLEHHSNFNPDEIKNEEVREKAKLATENWDYPIIVTTNVQLFESMFSNKPSDCR
HHCCHHHHHHCCCCCHHHCCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHCCCCHHHH
KLHNIVNSVLILDEAQTLPTDFLQPIVDALKAYQKIFGVSVLFTTASQPVLSGLIEGTNP
HHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
KANFEGIDRIIEIIPNEFALHDKLRRVKLVIDNTGKTYDEIAAEVAIYNKVLCIVNTRKD
CCCHHHHHHHHHHCCCHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHCEEEEEECCHH
AKELYDRLPNEGIKLHLSRMMCPAHISETIRKVKALLKDKSHPIVRVIATQLVEAGVDID
HHHHHHHCCCCCCEEHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCC
FPVVFRQESGLDSILQAAGRCNREGRNTVGTTFVFSLAAEKRIPFGAMKAANNARLNLPA
CCEEEECCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCCEEECCC
NSDWFDPSTMTEYFYQLYCRKNTFDDKDMKHYLYNPNELCFETASKKFRLIDDDCMNIIV
CCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHCCCEEEECHHHHHHHH
NWGNSMELVEKLKESGCTYPLMKQLAKFTVGVHSSDFDKLVSYGAIEEVLEGIYVLTDRV
HCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QYDKNTGLSLDNHWMEELLMI
HCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
METEKQLISHLYQNKENGKWIIQTNDEHQRGVAEMATSFSGLFGLPSWGHTLGMLHDKGK
CCCHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
ERDAFQQYIRTTSGLPVTDEKSYGEHHHAFVGGILVTNLMGKSVFNLLANQIISHHTGLH
CHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
DYVDAESVIEKRQLPEEINKGDIALNIPQLRKELLESPFSKLKVDMKHFHHLSRMLFSCL
HHCCHHHHHHHHHCHHHCCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
VDADRLNTEQFMDVESWEKRGCSSTLTDLLPKLEAHLRELQLYAPDTEVNHIRKKVQERC
HHHHHCCHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
RKASSEEKGFYSLTVPTGGGKTLSSLLWAMKHAVNHGMNRIIIAIPYTSIIVQTAGLLKE
HHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHH
IFGEEHVLEHHSNFNPDEIKNEEVREKAKLATENWDYPIIVTTNVQLFESMFSNKPSDCR
HHCCHHHHHHCCCCCHHHCCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHCCCCHHHH
KLHNIVNSVLILDEAQTLPTDFLQPIVDALKAYQKIFGVSVLFTTASQPVLSGLIEGTNP
HHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
KANFEGIDRIIEIIPNEFALHDKLRRVKLVIDNTGKTYDEIAAEVAIYNKVLCIVNTRKD
CCCHHHHHHHHHHCCCHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHCEEEEEECCHH
AKELYDRLPNEGIKLHLSRMMCPAHISETIRKVKALLKDKSHPIVRVIATQLVEAGVDID
HHHHHHHCCCCCCEEHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCC
FPVVFRQESGLDSILQAAGRCNREGRNTVGTTFVFSLAAEKRIPFGAMKAANNARLNLPA
CCEEEECCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCCEEECCC
NSDWFDPSTMTEYFYQLYCRKNTFDDKDMKHYLYNPNELCFETASKKFRLIDDDCMNIIV
CCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHCCCEEEECHHHHHHHH
NWGNSMELVEKLKESGCTYPLMKQLAKFTVGVHSSDFDKLVSYGAIEEVLEGIYVLTDRV
HCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QYDKNTGLSLDNHWMEELLMI
HCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA