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The map label for this gene is hydA [H]

Identifier: 150007737

GI number: 150007737

Start: 1271910

End: 1273289

Strand: Reverse

Name: hydA [H]

Synonym: BDI_1095

Alternate gene names: 150007737

Gene position: 1273289-1271910 (Counterclockwise)

Preceding gene: 150007738

Following gene: 150007736

Centisome position: 26.46

GC content: 47.68

Gene sequence:

>1380_bases
ATGGAGGAAGCTAATTTTTATCATGCCTTGAAGATTGACAATGACCGCTGTATAGGCTGTACGCATTGCATGAAAGAGTG
CCCTACGGGAGCGATCCGTATTCGGGATGGTAAGGCTTTGATCCATAAGGATTGGTGCGTGGATTGCGGCGAGTGCTTGA
AATCGTGCCCGACAGAGGCTATCTATGTGGAGCAGGATGACTTCCAGCGTATATTTGATTATAAATGCAGGGTAGCGTTG
ATGCCCACGGTATTTATCGGGCAGTTCTCAAAGTACACGACCGAGAAGGAAATTATCAGTGCCGTTATGGAACTGGGCTT
TACCCATGTTTTCCAAGTAGAGTTTACCGCCGATATGATCCATAAGGAAATGGTACGGCAGATGGAAAACGCCGAGGAAA
AACCGGTGATCAGTTCTTTTTGCCCCGCTATCGTCCGGTTGATACAAGTCCGTTTCCCTGCGCTGGTGGATAATATCTTA
TTGGTGAAAGCGCCGGTAAACGCCTCGGCCACTTATTATCATAAGATATTGGAAGGGCAAGGTGTTCCCTCGGAAGAGAT
CGGTATCTTTTATGTTACGCCTTGCGCGGCGAAAATCGCGGCGTTGAAGGGAGCGGAAGGTTATTCATCTACGATCAAAG
GCGTGATAAATATGGATACCCTATATAATAAGGTATACCATATTCTTAAGAATCGCCCGAGAGGATATGAGCCGGAATGT
GAGCTTCCTCCGCCATTAACGAAAAAAGAGATGCGATGGAGCCAGACAGGAGGGGAGGCCAAACATTTCTCCGGTCGTTG
CCTCGCGATCGATGAGATCCATAATGTGATCGATTTCTTGGAACGAATGGAAACGACCAGCGAGGTACGTAACGTAGACT
TTCTGGAACTGAGGGCTTGCGACCGTAGCTGTGCCGGAGGTGTATTAGCCGTAGCGAACCGTTTCCTCACGGCCGAGCGT
ATCATGAAGCGATCCATGAACCGGGATAAAGTACCGATGATATACGCCGCCGATAATTTCGAGGCTTTATCCTATTTGAG
GCAGCATATTACGATCCGTCCGGTGCAACCGAATCCCAAACGGTTGTACGATGGAACGATCGATGAGATGCTGAAGAAAA
TGGAGCAAGTGCGGAAATTGATGTGCTACCTACCGGGAATCGATTGTGGCGCTTGCGGTAGCCCGAACTGTCAAAGCTTG
GCTGAGGATATCGTACGCCACGAGGCTCAATTCAGTGATTGCGTATTTATGCAACGTAATATGGAGAAGCACGGTAAACT
AGACCAAGAGCATGCCTTCCGTATCGTTGAGAAGACATGGGGGAAAGATCGTTTAAATAAGGATTGTTATAAGAAAGGAG
CTAAATATGAAGGTTTGTGA

Upstream 100 bases:

>100_bases
TATGAAGAAGAACGTAGATGAATTAACGATCGAGAGCCAAGTAGACGTAGGTACCACGGTACGTATGGTCACATGGTTTA
ATAAAGAAGGAGCGTAGACC

Downstream 100 bases:

>100_bases
TTTAGTGAAGATGTTGAATCTTACTGTATTTTGTGGAGAAGAGGGCCTTGATACAGAGATAACCGGAGGCTATACGAGCG
ATTTATTAAGTGATGTCATG

Product: ferredoxin 2

Products: NA

Alternate protein names: Fe hydrogenlyase [H]

Number of amino acids: Translated: 459; Mature: 459

Protein sequence:

>459_residues
MEEANFYHALKIDNDRCIGCTHCMKECPTGAIRIRDGKALIHKDWCVDCGECLKSCPTEAIYVEQDDFQRIFDYKCRVAL
MPTVFIGQFSKYTTEKEIISAVMELGFTHVFQVEFTADMIHKEMVRQMENAEEKPVISSFCPAIVRLIQVRFPALVDNIL
LVKAPVNASATYYHKILEGQGVPSEEIGIFYVTPCAAKIAALKGAEGYSSTIKGVINMDTLYNKVYHILKNRPRGYEPEC
ELPPPLTKKEMRWSQTGGEAKHFSGRCLAIDEIHNVIDFLERMETTSEVRNVDFLELRACDRSCAGGVLAVANRFLTAER
IMKRSMNRDKVPMIYAADNFEALSYLRQHITIRPVQPNPKRLYDGTIDEMLKKMEQVRKLMCYLPGIDCGACGSPNCQSL
AEDIVRHEAQFSDCVFMQRNMEKHGKLDQEHAFRIVEKTWGKDRLNKDCYKKGAKYEGL

Sequences:

>Translated_459_residues
MEEANFYHALKIDNDRCIGCTHCMKECPTGAIRIRDGKALIHKDWCVDCGECLKSCPTEAIYVEQDDFQRIFDYKCRVAL
MPTVFIGQFSKYTTEKEIISAVMELGFTHVFQVEFTADMIHKEMVRQMENAEEKPVISSFCPAIVRLIQVRFPALVDNIL
LVKAPVNASATYYHKILEGQGVPSEEIGIFYVTPCAAKIAALKGAEGYSSTIKGVINMDTLYNKVYHILKNRPRGYEPEC
ELPPPLTKKEMRWSQTGGEAKHFSGRCLAIDEIHNVIDFLERMETTSEVRNVDFLELRACDRSCAGGVLAVANRFLTAER
IMKRSMNRDKVPMIYAADNFEALSYLRQHITIRPVQPNPKRLYDGTIDEMLKKMEQVRKLMCYLPGIDCGACGSPNCQSL
AEDIVRHEAQFSDCVFMQRNMEKHGKLDQEHAFRIVEKTWGKDRLNKDCYKKGAKYEGL
>Mature_459_residues
MEEANFYHALKIDNDRCIGCTHCMKECPTGAIRIRDGKALIHKDWCVDCGECLKSCPTEAIYVEQDDFQRIFDYKCRVAL
MPTVFIGQFSKYTTEKEIISAVMELGFTHVFQVEFTADMIHKEMVRQMENAEEKPVISSFCPAIVRLIQVRFPALVDNIL
LVKAPVNASATYYHKILEGQGVPSEEIGIFYVTPCAAKIAALKGAEGYSSTIKGVINMDTLYNKVYHILKNRPRGYEPEC
ELPPPLTKKEMRWSQTGGEAKHFSGRCLAIDEIHNVIDFLERMETTSEVRNVDFLELRACDRSCAGGVLAVANRFLTAER
IMKRSMNRDKVPMIYAADNFEALSYLRQHITIRPVQPNPKRLYDGTIDEMLKKMEQVRKLMCYLPGIDCGACGSPNCQSL
AEDIVRHEAQFSDCVFMQRNMEKHGKLDQEHAFRIVEKTWGKDRLNKDCYKKGAKYEGL

Specific function: May be involved in hydrogen uptake for the reduction of sulfate to hydrogen sulfide in an electron transport chain. Cytochrome c3 is likely to be the physiological electron carrier for the enzyme [H]

COG id: COG4624

COG function: function code R; Iron only hydrogenase large subunit, C-terminal domain

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR009016
- InterPro:   IPR004108
- InterPro:   IPR013352 [H]

Pfam domain/function: PF02906 Fe_hyd_lg_C; PF00037 Fer4 [H]

EC number: =1.12.7.2 [H]

Molecular weight: Translated: 52383; Mature: 52383

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
8.5 %Cys+Met (Translated Protein)
4.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
8.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEANFYHALKIDNDRCIGCTHCMKECPTGAIRIRDGKALIHKDWCVDCGECLKSCPTEA
CCCCCEEEEEEECCCCCCCHHHHHHHCCCCEEEEECCCEEEEHHHCCCHHHHHHHCCCCE
IYVEQDDFQRIFDYKCRVALMPTVFIGQFSKYTTEKEIISAVMELGFTHVFQVEFTADMI
EEECHHHHHHHHHCCCEEEEECHHHHHHHHHHCHHHHHHHHHHHCCCCEEEEEEHHHHHH
HKEMVRQMENAEEKPVISSFCPAIVRLIQVRFPALVDNILLVKAPVNASATYYHKILEGQ
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHCCC
GVPSEEIGIFYVTPCAAKIAALKGAEGYSSTIKGVINMDTLYNKVYHILKNRPRGYEPEC
CCCCCCCCEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
ELPPPLTKKEMRWSQTGGEAKHFSGRCLAIDEIHNVIDFLERMETTSEVRNVDFLELRAC
CCCCCCCHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
DRSCAGGVLAVANRFLTAERIMKRSMNRDKVPMIYAADNFEALSYLRQHITIRPVQPNPK
CCHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHCCEEECCCCCCH
RLYDGTIDEMLKKMEQVRKLMCYLPGIDCGACGSPNCQSLAEDIVRHEAQFSDCVFMQRN
HHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
MEKHGKLDQEHAFRIVEKTWGKDRLNKDCYKKGAKYEGL
HHHHCCCCHHHHHHHHHHHCCHHHCCHHHHHCCCCCCCC
>Mature Secondary Structure
MEEANFYHALKIDNDRCIGCTHCMKECPTGAIRIRDGKALIHKDWCVDCGECLKSCPTEA
CCCCCEEEEEEECCCCCCCHHHHHHHCCCCEEEEECCCEEEEHHHCCCHHHHHHHCCCCE
IYVEQDDFQRIFDYKCRVALMPTVFIGQFSKYTTEKEIISAVMELGFTHVFQVEFTADMI
EEECHHHHHHHHHCCCEEEEECHHHHHHHHHHCHHHHHHHHHHHCCCCEEEEEEHHHHHH
HKEMVRQMENAEEKPVISSFCPAIVRLIQVRFPALVDNILLVKAPVNASATYYHKILEGQ
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHCCC
GVPSEEIGIFYVTPCAAKIAALKGAEGYSSTIKGVINMDTLYNKVYHILKNRPRGYEPEC
CCCCCCCCEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
ELPPPLTKKEMRWSQTGGEAKHFSGRCLAIDEIHNVIDFLERMETTSEVRNVDFLELRAC
CCCCCCCHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
DRSCAGGVLAVANRFLTAERIMKRSMNRDKVPMIYAADNFEALSYLRQHITIRPVQPNPK
CCHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHCCEEECCCCCCH
RLYDGTIDEMLKKMEQVRKLMCYLPGIDCGACGSPNCQSLAEDIVRHEAQFSDCVFMQRN
HHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
MEKHGKLDQEHAFRIVEKTWGKDRLNKDCYKKGAKYEGL
HHHHCCCCHHHHHHHHHHHCCHHHCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2661538 [H]