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The map label for this gene is cbiD [H]

Identifier: 150007709

GI number: 150007709

Start: 1233966

End: 1235837

Strand: Reverse

Name: cbiD [H]

Synonym: BDI_1064

Alternate gene names: 150007709

Gene position: 1235837-1233966 (Counterclockwise)

Preceding gene: 150007710

Following gene: 150007708

Centisome position: 25.69

GC content: 49.41

Gene sequence:

>1872_bases
ATGATACTGATCCTTGGAGGAACGACAGAAGGTCGTGTGGCTGTGCGGGTAGCGGACGAGGCAGCCGCTACCTATTACTA
TTCTACGAAAGGAACTTTGCAATCCATTGAATGTGCGCATGGAATCCGTTTGACCGGAGCCATGAATGCGGAGGAAATGG
AGTGTTTTTGTCGTGACCACGCGATTAAGCTATTGATTGATGCGGCACACCCTTTCGCTCAAGTGTTACACCAAACGATC
GAAAAAGTATCGAAATGTTTACAGATTCCGGTGATCCGTTACGAACGTCGGTATCCACCTCGTGATGAGGACTTGATTTG
GTGCGATAGTTATGCAGACGCAATTCACCAAATGGAAAACAAAGGTATCCAACGGCTACTTGCCCTCAGTGGCGTGAACA
CCCTTGCCCCGCTCCGCCCTTATTGGCGATCGCATACCACTTGGTTCCGTATATTGGAGCGGGAGGAATCTTTGTCGTTG
GCCGAAAAGCAGGGCTTCCCCCAAGAACGTCTGGTTTTCTATCGAGAAGGTGAGGATGAGTTAAAGTTGTTGGAGCAACT
CCATCCGGATGCGATCTTGACAAAGGAAAGTGGTTTCTCCGGCTATTTTACGGATAAAGTGAACGCTGCCCGCCAATTCG
GAATACCAGTATTTGTCGTGAAGCGTCCCGCATTACCGGAAACTTTCTACCGAGTGTATGGTGAAGACGGATTGCGTAAA
CAAATTGAACGCCTATTACCAGAATTCTTTCCCTTGAAAAGCGGATATACGACCGGAGCTTGTGCTACCGCCGCCGCAAA
AGCTGCTTTATTGGCCTTATTATCACGGAAGGAACAAACAGAAAGCCAGATAACATTACCCTCGGGAGAACAGATAACGT
TGCCGGTAGCCTATACCGAATGGGCCGGGTGTTCCTCCGCCACCTGTACCGTGATCAAGGAGTCTGGGGATGATCCGGAC
GTGACGAATCATAGCCGGATCCGGGTTACTGTTCAATTATCTCCCGATGCATCCGGTTGTGCCACGGTAATGGCACAAGA
AGAACATTGTCAAGAAACAGAAAGCGACGATACGGGAAGAGTCATCTTCCAAGCAGGTGAAGGAGTCGGAACCGTGACCC
TTCCGGGACTCGGCTTGAAAGTCGGTGGCCCGGCTATAAACGCCACGCCCCGTAAGATGATCCGGCAAGAGCTGATTCCA
CTCCTGCCCTCACCCGATTCCGTCGCTATTGTCACGGTCTCGGTTCCCGGTGGCGAGGAGTTGGCGAAACGTACCTTCAA
TCCGAAACTTGGAATTATCGGGGGAATCTCTATTATCGGGACATCCGGAATCGTGCGTCCTTTCTCATCGGACGCTTTTA
TCGCCTCGATACGGAAAGAAGCCAGTGTCGCCAAAGCGATAGGTTGCGAGACGTTGGTTATTAATTCCGGGGCGAAGAGT
GAACGCTACCTTCGGAGCTTATACGCTTCTTTGCCTCCACAATCATTCGTCCATTACGGGAATTTTATCGGAGAGACGCT
AAAGATCGCTGCCGATTTAGGTTTCAAGCAGGTTATCTTAGGCATCATGATCGGCAAGGCGGTGAAACTTGCGGAAGGTT
TCCTGGATACACACAGCAAAAAAGTCGTCATGAACAAAGGCTTCCTTCAAGATGTAGCGAAAGAAGCGAAATGCGAGGAG
GCGACCGTAGATGCAATCAATCGGATTACGTTGGCCCGTGAATTATGGGAGCTTCTTACGGAAAAAGATCAAAATCGTTT
CTTCCCATTACTTTTACAAAAATGTAAATCGTATTGCGCTCCTATCCTTCCCGACGGCGAACTAACCTTGCTGTTAATAT
CCGAAGAGGGCAAGGTCTTATACCAATCTTAG

Upstream 100 bases:

>100_bases
TTACACTGACAACATTACTTGTCGTCGGGGATGCCATCGATAATCGCAAGGGTCTATCCCGCTTATATGCGGATGAATTC
AAACATCTTTTCCGTAAGTA

Downstream 100 bases:

>100_bases
CTTTAGAGACGCAGCACGCACGCTACGTCTCTACACCCCCCAGACTGTAATAGCATTTCTTTTTAGCTGTTTATTCTTTT
TTATTAGGGATTCTTTAAGA

Product: precorrin-6X reductase/cobalamin biosynthetic protein CbiD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 623; Mature: 623

Protein sequence:

>623_residues
MILILGGTTEGRVAVRVADEAAATYYYSTKGTLQSIECAHGIRLTGAMNAEEMECFCRDHAIKLLIDAAHPFAQVLHQTI
EKVSKCLQIPVIRYERRYPPRDEDLIWCDSYADAIHQMENKGIQRLLALSGVNTLAPLRPYWRSHTTWFRILEREESLSL
AEKQGFPQERLVFYREGEDELKLLEQLHPDAILTKESGFSGYFTDKVNAARQFGIPVFVVKRPALPETFYRVYGEDGLRK
QIERLLPEFFPLKSGYTTGACATAAAKAALLALLSRKEQTESQITLPSGEQITLPVAYTEWAGCSSATCTVIKESGDDPD
VTNHSRIRVTVQLSPDASGCATVMAQEEHCQETESDDTGRVIFQAGEGVGTVTLPGLGLKVGGPAINATPRKMIRQELIP
LLPSPDSVAIVTVSVPGGEELAKRTFNPKLGIIGGISIIGTSGIVRPFSSDAFIASIRKEASVAKAIGCETLVINSGAKS
ERYLRSLYASLPPQSFVHYGNFIGETLKIAADLGFKQVILGIMIGKAVKLAEGFLDTHSKKVVMNKGFLQDVAKEAKCEE
ATVDAINRITLARELWELLTEKDQNRFFPLLLQKCKSYCAPILPDGELTLLLISEEGKVLYQS

Sequences:

>Translated_623_residues
MILILGGTTEGRVAVRVADEAAATYYYSTKGTLQSIECAHGIRLTGAMNAEEMECFCRDHAIKLLIDAAHPFAQVLHQTI
EKVSKCLQIPVIRYERRYPPRDEDLIWCDSYADAIHQMENKGIQRLLALSGVNTLAPLRPYWRSHTTWFRILEREESLSL
AEKQGFPQERLVFYREGEDELKLLEQLHPDAILTKESGFSGYFTDKVNAARQFGIPVFVVKRPALPETFYRVYGEDGLRK
QIERLLPEFFPLKSGYTTGACATAAAKAALLALLSRKEQTESQITLPSGEQITLPVAYTEWAGCSSATCTVIKESGDDPD
VTNHSRIRVTVQLSPDASGCATVMAQEEHCQETESDDTGRVIFQAGEGVGTVTLPGLGLKVGGPAINATPRKMIRQELIP
LLPSPDSVAIVTVSVPGGEELAKRTFNPKLGIIGGISIIGTSGIVRPFSSDAFIASIRKEASVAKAIGCETLVINSGAKS
ERYLRSLYASLPPQSFVHYGNFIGETLKIAADLGFKQVILGIMIGKAVKLAEGFLDTHSKKVVMNKGFLQDVAKEAKCEE
ATVDAINRITLARELWELLTEKDQNRFFPLLLQKCKSYCAPILPDGELTLLLISEEGKVLYQS
>Mature_623_residues
MILILGGTTEGRVAVRVADEAAATYYYSTKGTLQSIECAHGIRLTGAMNAEEMECFCRDHAIKLLIDAAHPFAQVLHQTI
EKVSKCLQIPVIRYERRYPPRDEDLIWCDSYADAIHQMENKGIQRLLALSGVNTLAPLRPYWRSHTTWFRILEREESLSL
AEKQGFPQERLVFYREGEDELKLLEQLHPDAILTKESGFSGYFTDKVNAARQFGIPVFVVKRPALPETFYRVYGEDGLRK
QIERLLPEFFPLKSGYTTGACATAAAKAALLALLSRKEQTESQITLPSGEQITLPVAYTEWAGCSSATCTVIKESGDDPD
VTNHSRIRVTVQLSPDASGCATVMAQEEHCQETESDDTGRVIFQAGEGVGTVTLPGLGLKVGGPAINATPRKMIRQELIP
LLPSPDSVAIVTVSVPGGEELAKRTFNPKLGIIGGISIIGTSGIVRPFSSDAFIASIRKEASVAKAIGCETLVINSGAKS
ERYLRSLYASLPPQSFVHYGNFIGETLKIAADLGFKQVILGIMIGKAVKLAEGFLDTHSKKVVMNKGFLQDVAKEAKCEE
ATVDAINRITLARELWELLTEKDQNRFFPLLLQKCKSYCAPILPDGELTLLLISEEGKVLYQS

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A [H]

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002748 [H]

Pfam domain/function: PF01888 CbiD [H]

EC number: NA

Molecular weight: Translated: 68504; Mature: 68504

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS51014 COBK_CBIJ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILILGGTTEGRVAVRVADEAAATYYYSTKGTLQSIECAHGIRLTGAMNAEEMECFCRDH
CEEEEECCCCCEEEEEEECCCCEEEEEECCCCHHHHHHHCCEEEEECCCHHHHHHHHHHH
AIKLLIDAAHPFAQVLHQTIEKVSKCLQIPVIRYERRYPPRDEDLIWCDSYADAIHQMEN
HHEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEEECHHHHHHHHHHH
KGIQRLLALSGVNTLAPLRPYWRSHTTWFRILEREESLSLAEKQGFPQERLVFYREGEDE
HHHHHHHHHCCCCHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCHH
LKLLEQLHPDAILTKESGFSGYFTDKVNAARQFGIPVFVVKRPALPETFYRVYGEDGLRK
HHHHHHHCCCEEEEECCCCCCEECHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCHHHH
QIERLLPEFFPLKSGYTTGACATAAAKAALLALLSRKEQTESQITLPSGEQITLPVAYTE
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEEEEEC
WAGCSSATCTVIKESGDDPDVTNHSRIRVTVQLSPDASGCATVMAQEEHCQETESDDTGR
CCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCHHHHHCCHHHHHCCCCCCCCE
VIFQAGEGVGTVTLPGLGLKVGGPAINATPRKMIRQELIPLLPSPDSVAIVTVSVPGGEE
EEEEECCCCEEEEECCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCHH
LAKRTFNPKLGIIGGISIIGTSGIVRPFSSDAFIASIRKEASVAKAIGCETLVINSGAKS
HHHHCCCCCCEEEECEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCH
ERYLRSLYASLPPQSFVHYGNFIGETLKIAADLGFKQVILGIMIGKAVKLAEGFLDTHSK
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCC
KVVMNKGFLQDVAKEAKCEEATVDAINRITLARELWELLTEKDQNRFFPLLLQKCKSYCA
EEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
PILPDGELTLLLISEEGKVLYQS
CCCCCCCEEEEEEECCCCEEECC
>Mature Secondary Structure
MILILGGTTEGRVAVRVADEAAATYYYSTKGTLQSIECAHGIRLTGAMNAEEMECFCRDH
CEEEEECCCCCEEEEEEECCCCEEEEEECCCCHHHHHHHCCEEEEECCCHHHHHHHHHHH
AIKLLIDAAHPFAQVLHQTIEKVSKCLQIPVIRYERRYPPRDEDLIWCDSYADAIHQMEN
HHEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEEECHHHHHHHHHHH
KGIQRLLALSGVNTLAPLRPYWRSHTTWFRILEREESLSLAEKQGFPQERLVFYREGEDE
HHHHHHHHHCCCCHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCHH
LKLLEQLHPDAILTKESGFSGYFTDKVNAARQFGIPVFVVKRPALPETFYRVYGEDGLRK
HHHHHHHCCCEEEEECCCCCCEECHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCHHHH
QIERLLPEFFPLKSGYTTGACATAAAKAALLALLSRKEQTESQITLPSGEQITLPVAYTE
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEEEEEC
WAGCSSATCTVIKESGDDPDVTNHSRIRVTVQLSPDASGCATVMAQEEHCQETESDDTGR
CCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCHHHHHCCHHHHHCCCCCCCCE
VIFQAGEGVGTVTLPGLGLKVGGPAINATPRKMIRQELIPLLPSPDSVAIVTVSVPGGEE
EEEEECCCCEEEEECCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCHH
LAKRTFNPKLGIIGGISIIGTSGIVRPFSSDAFIASIRKEASVAKAIGCETLVINSGAKS
HHHHCCCCCCEEEECEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCH
ERYLRSLYASLPPQSFVHYGNFIGETLKIAADLGFKQVILGIMIGKAVKLAEGFLDTHSK
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCC
KVVMNKGFLQDVAKEAKCEEATVDAINRITLARELWELLTEKDQNRFFPLLLQKCKSYCA
EEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
PILPDGELTLLLISEEGKVLYQS
CCCCCCCEEEEEEECCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA