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The map label for this gene is xtmB [H]

Identifier: 150007526

GI number: 150007526

Start: 1013850

End: 1015118

Strand: Direct

Name: xtmB [H]

Synonym: BDI_0879

Alternate gene names: 150007526

Gene position: 1013850-1015118 (Clockwise)

Preceding gene: 150007525

Following gene: 150007527

Centisome position: 21.07

GC content: 43.03

Gene sequence:

>1269_bases
ATGATTGTTCCTCAAGAAATTTACCATCCATTATACGAGGATAAGGAAAAATTTATAATTCTTATCACTGGTGGACGTGG
TTCGGGAAAATCTTTCAATGCTTCCACCTTTATTGAACGGCTGACCTTTGAACTTACTCCTGTAGAGAAGATAGTTCATC
AGATTCTCTACACACGTTACACGATGGTCTCCGCTGGCATGTCCATTATCCCTGAAATGATGGAGAAGATAGAGCTGGAT
GGAACGACCAAGTATTTCAAGACTACCAAAACGGATATAGTCAACAAGATGACTAAGAGCCGTATCATGTTCCGGGGTAT
CAAGACTTCTTCGGGGAATCAGACGGCAAAGCTGAAATCCATTCAAGGCATCACTACTTTCGTCTGTGATGAAGCGGAGG
AATGGACGAATGAAGAAGAGTTTGATAAGATAATGCTCTCCATCCGTAAGAAAGGGATTCAGAACCGGATTATTATCATA
ATGAATCCCTGCGATTCCAATCACTTCATCTACAAGAAATATATTGAGAACACTCACAAGCTGGTAGAGATTGACGGAGT
GCAGGTACAGATTTCCACACATCCGAATGTGCTTCACATTCATACTACCTATCTTGATAACTTGGAGAACCTTTCGCCGG
AGTTCTTGAAAGAGGTCGAGGATATGAAGGTGAACAACCCGGAGAAATACGCTCATGTCGTTATAGGTCGCTGGGCTGAT
GTTGCGGAAGGTGCTGTGTTCAAGAAGTGGGGTATTGTCGATGAGTTTCCTGCTTGGGCAAAGAAGGTGGCTATCGGGCA
AGACTTCGGTTATACACACGATCCGTCCGCTTCTATTCGATGCGGCATCGTTGATAATGCCCTTTATTTGGATGAGATAG
ATTACCGGACCGGTTTACTTTCTTCCGACATTATTAAATCTCTCAGACCTTGGGGCTTGAAAGTCATTGCCGACAGTGCT
GACCCTCGTTTGATTCAAGAGATACACAACGGAGGTGTTAAGATATATGCTGTAGAAAAGGGGGCTGGCTCTGTAAACGC
AGGTCTTGACAAGATGCAAGGCATGGAAATGTATATCACTAAACGTTCGTATAACTTACAAAGAGAGTACAGAAAATATG
TATGGGCAAAGGATAAAGACGGAAACTATATTAACGAGCCGGAAGACCACGACAATCACGGAATCGATGCAGTCCGTTAC
TATGTATTGGGTGAGCTGCTAGGTAAGATTCAGAAGCCGAAAGATTTAACAGGAATATTCACACACTAA

Upstream 100 bases:

>100_bases
ACTGGAGAAAGGTTGAGCGTAAACAGGATGAAGATGCCGATATTCCAACTGATATTGACCACGGTATTTCTATTGATTCA
TGGATTAAAGATAAATTGAA

Downstream 100 bases:

>100_bases
AAATAAATTGTATGGAATTGAAAATAATGAAGTTTCACTTTGGCTGTATTTGTGGAGAACCTGTCTTTGGATGGGCTATT
CAAATCAAGAGGCATTGGTG

Product: putative phage large subunit terminase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MIVPQEIYHPLYEDKEKFIILITGGRGSGKSFNASTFIERLTFELTPVEKIVHQILYTRYTMVSAGMSIIPEMMEKIELD
GTTKYFKTTKTDIVNKMTKSRIMFRGIKTSSGNQTAKLKSIQGITTFVCDEAEEWTNEEEFDKIMLSIRKKGIQNRIIII
MNPCDSNHFIYKKYIENTHKLVEIDGVQVQISTHPNVLHIHTTYLDNLENLSPEFLKEVEDMKVNNPEKYAHVVIGRWAD
VAEGAVFKKWGIVDEFPAWAKKVAIGQDFGYTHDPSASIRCGIVDNALYLDEIDYRTGLLSSDIIKSLRPWGLKVIADSA
DPRLIQEIHNGGVKIYAVEKGAGSVNAGLDKMQGMEMYITKRSYNLQREYRKYVWAKDKDGNYINEPEDHDNHGIDAVRY
YVLGELLGKIQKPKDLTGIFTH

Sequences:

>Translated_422_residues
MIVPQEIYHPLYEDKEKFIILITGGRGSGKSFNASTFIERLTFELTPVEKIVHQILYTRYTMVSAGMSIIPEMMEKIELD
GTTKYFKTTKTDIVNKMTKSRIMFRGIKTSSGNQTAKLKSIQGITTFVCDEAEEWTNEEEFDKIMLSIRKKGIQNRIIII
MNPCDSNHFIYKKYIENTHKLVEIDGVQVQISTHPNVLHIHTTYLDNLENLSPEFLKEVEDMKVNNPEKYAHVVIGRWAD
VAEGAVFKKWGIVDEFPAWAKKVAIGQDFGYTHDPSASIRCGIVDNALYLDEIDYRTGLLSSDIIKSLRPWGLKVIADSA
DPRLIQEIHNGGVKIYAVEKGAGSVNAGLDKMQGMEMYITKRSYNLQREYRKYVWAKDKDGNYINEPEDHDNHGIDAVRY
YVLGELLGKIQKPKDLTGIFTH
>Mature_422_residues
MIVPQEIYHPLYEDKEKFIILITGGRGSGKSFNASTFIERLTFELTPVEKIVHQILYTRYTMVSAGMSIIPEMMEKIELD
GTTKYFKTTKTDIVNKMTKSRIMFRGIKTSSGNQTAKLKSIQGITTFVCDEAEEWTNEEEFDKIMLSIRKKGIQNRIIII
MNPCDSNHFIYKKYIENTHKLVEIDGVQVQISTHPNVLHIHTTYLDNLENLSPEFLKEVEDMKVNNPEKYAHVVIGRWAD
VAEGAVFKKWGIVDEFPAWAKKVAIGQDFGYTHDPSASIRCGIVDNALYLDEIDYRTGLLSSDIIKSLRPWGLKVIADSA
DPRLIQEIHNGGVKIYAVEKGAGSVNAGLDKMQGMEMYITKRSYNLQREYRKYVWAKDKDGNYINEPEDHDNHGIDAVRY
YVLGELLGKIQKPKDLTGIFTH

Specific function: Functions as a terminase [H]

COG id: COG1783

COG function: function code R; Phage terminase large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis yqaT and phage SPP1 terminase large subunit [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006701
- InterPro:   IPR006437 [H]

Pfam domain/function: PF04466 Terminase_3 [H]

EC number: NA

Molecular weight: Translated: 48246; Mature: 48246

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVPQEIYHPLYEDKEKFIILITGGRGSGKSFNASTFIERLTFELTPVEKIVHQILYTRY
CCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
TMVSAGMSIIPEMMEKIELDGTTKYFKTTKTDIVNKMTKSRIMFRGIKTSSGNQTAKLKS
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHH
IQGITTFVCDEAEEWTNEEEFDKIMLSIRKKGIQNRIIIIMNPCDSNHFIYKKYIENTHK
HCCHHHEEECCHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHCCCCE
LVEIDGVQVQISTHPNVLHIHTTYLDNLENLSPEFLKEVEDMKVNNPEKYAHVVIGRWAD
EEEECCEEEEEECCCCEEEEEHHHHHCHHCCCHHHHHHHHHCCCCCCHHHHEEEEECCHH
VAEGAVFKKWGIVDEFPAWAKKVAIGQDFGYTHDPSASIRCGIVDNALYLDEIDYRTGLL
HHCCCHHHHCCCCHHCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEEEEECCCHHHCCC
SSDIIKSLRPWGLKVIADSADPRLIQEIHNGGVKIYAVEKGAGSVNAGLDKMQGMEMYIT
HHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHCCCEEEEE
KRSYNLQREYRKYVWAKDKDGNYINEPEDHDNHGIDAVRYYVLGELLGKIQKPKDLTGIF
ECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
TH
CC
>Mature Secondary Structure
MIVPQEIYHPLYEDKEKFIILITGGRGSGKSFNASTFIERLTFELTPVEKIVHQILYTRY
CCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
TMVSAGMSIIPEMMEKIELDGTTKYFKTTKTDIVNKMTKSRIMFRGIKTSSGNQTAKLKS
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHH
IQGITTFVCDEAEEWTNEEEFDKIMLSIRKKGIQNRIIIIMNPCDSNHFIYKKYIENTHK
HCCHHHEEECCHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHCCCCE
LVEIDGVQVQISTHPNVLHIHTTYLDNLENLSPEFLKEVEDMKVNNPEKYAHVVIGRWAD
EEEECCEEEEEECCCCEEEEEHHHHHCHHCCCHHHHHHHHHCCCCCCHHHHEEEEECCHH
VAEGAVFKKWGIVDEFPAWAKKVAIGQDFGYTHDPSASIRCGIVDNALYLDEIDYRTGLL
HHCCCHHHHCCCCHHCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEEEEECCCHHHCCC
SSDIIKSLRPWGLKVIADSADPRLIQEIHNGGVKIYAVEKGAGSVNAGLDKMQGMEMYIT
HHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHCCCEEEEE
KRSYNLQREYRKYVWAKDKDGNYINEPEDHDNHGIDAVRYYVLGELLGKIQKPKDLTGIF
ECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
TH
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 8083174 [H]