Click here to switch to the map view.

The map label for this gene is rpoB [H]

Identifier: 150007504

GI number: 150007504

Start: 997648

End: 998490

Strand: Direct

Name: rpoB [H]

Synonym: BDI_0856

Alternate gene names: 150007504

Gene position: 997648-998490 (Clockwise)

Preceding gene: 150007503

Following gene: 150007505

Centisome position: 20.74

GC content: 36.77

Gene sequence:

>843_bases
ATGATAGAGACAAAGAATAACGAAATAAGGTATTTTACATCTGATCCCCAAAAGATGCTCAATAAATACCTTGCTCAACG
AGTCCTAAAAACATGGACAGAGGACTTTATTGATGAAGATACTAGCGAGGTTGTATCAATTGAGCGTAATGAATTACTGT
TTCAGAGAGGAACATTGATAGATCAGGATGTTCTTGCTCAAATCCGATTCTGTTATGAGTCTGGTGATATAACAAAGGAT
ATTGAGGTAAGTAATCAAAAACGTTTGGCTGTTGAGCTGGTAAATGACTACTTACAGCCTTATATCGCTCAGGCCACTAT
TGATAGCAAAAAGTGTAAATTCCTGTTTTATGCAACCAGTGTAGATTCTGCACTTCTTCTCTTAAAGGATTATATTGAAC
TGAACTTTACGGCAGGCTTCATTATTAACATGGTTAAAGAGTTTGATTCCTGTGTAATCCTTACTGACACATTAAAAGAA
AAGAAGATCGATACTTTGCCTTTGGATTTTCCCGATAATGATCCTGATGACAAGCCGGACGTTGATGAAGAGGAAGAACC
GAAGAATTGTGATCGGAAGTTTTACCAGATAGAAACAAAAATTCTATTTGACGAGGATGAACGTTCAGCGACATTTGTTG
TCCACACTTACAATGTTGATCGGGCAATGATGTTGATTACTTCTTATCTCAAAAAGAAGCAGGATGAACATGAGCAAGAA
GCTAAAGAAAAGGGAAATCCGTTTGAAAAGAAAGAGATTCATACTATGATTGAGGTTGCAAAGCCTATATCGGTAGGACG
GTTTATTCCTCGTGAATTTTCAATGGCTTATTCTGGTAAATAG

Upstream 100 bases:

>100_bases
GATTGGGGATGTTTGAAAACATTCCCTATAACCGCTAAGGGAGAAGTCTCTAAGAAGGGGATGATTATTCATAGTGAGGA
ATCTATTAAACCGGTATAGC

Downstream 100 bases:

>100_bases
GTTTATCTTGATATGCCTTGATCGGTTATCCGGAAACAATTACTGCCATGAGACGGAAAGTTTGTGTAGCAATCGCAAAT
AGCCGGGTGAAAGCCCCGGC

Product: putative RNA polymerase subunit beta

Products: NA

Alternate protein names: RNAP subunit beta; RNA polymerase subunit beta; Transcriptase subunit beta [H]

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MIETKNNEIRYFTSDPQKMLNKYLAQRVLKTWTEDFIDEDTSEVVSIERNELLFQRGTLIDQDVLAQIRFCYESGDITKD
IEVSNQKRLAVELVNDYLQPYIAQATIDSKKCKFLFYATSVDSALLLLKDYIELNFTAGFIINMVKEFDSCVILTDTLKE
KKIDTLPLDFPDNDPDDKPDVDEEEEPKNCDRKFYQIETKILFDEDERSATFVVHTYNVDRAMMLITSYLKKKQDEHEQE
AKEKGNPFEKKEIHTMIEVAKPISVGRFIPREFSMAYSGK

Sequences:

>Translated_280_residues
MIETKNNEIRYFTSDPQKMLNKYLAQRVLKTWTEDFIDEDTSEVVSIERNELLFQRGTLIDQDVLAQIRFCYESGDITKD
IEVSNQKRLAVELVNDYLQPYIAQATIDSKKCKFLFYATSVDSALLLLKDYIELNFTAGFIINMVKEFDSCVILTDTLKE
KKIDTLPLDFPDNDPDDKPDVDEEEEPKNCDRKFYQIETKILFDEDERSATFVVHTYNVDRAMMLITSYLKKKQDEHEQE
AKEKGNPFEKKEIHTMIEVAKPISVGRFIPREFSMAYSGK
>Mature_280_residues
MIETKNNEIRYFTSDPQKMLNKYLAQRVLKTWTEDFIDEDTSEVVSIERNELLFQRGTLIDQDVLAQIRFCYESGDITKD
IEVSNQKRLAVELVNDYLQPYIAQATIDSKKCKFLFYATSVDSALLLLKDYIELNFTAGFIINMVKEFDSCVILTDTLKE
KKIDTLPLDFPDNDPDDKPDVDEEEEPKNCDRKFYQIETKILFDEDERSATFVVHTYNVDRAMMLITSYLKKKQDEHEQE
AKEKGNPFEKKEIHTMIEVAKPISVGRFIPREFSMAYSGK

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase beta chain family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010243
- InterPro:   IPR019462
- InterPro:   IPR015712
- InterPro:   IPR007120
- InterPro:   IPR007121
- InterPro:   IPR007644
- InterPro:   IPR007642
- InterPro:   IPR007645
- InterPro:   IPR007641
- InterPro:   IPR014724 [H]

Pfam domain/function: PF04563 RNA_pol_Rpb2_1; PF04561 RNA_pol_Rpb2_2; PF04565 RNA_pol_Rpb2_3; PF10385 RNA_pol_Rpb2_45; PF00562 RNA_pol_Rpb2_6; PF04560 RNA_pol_Rpb2_7 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 32731; Mature: 32731

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIETKNNEIRYFTSDPQKMLNKYLAQRVLKTWTEDFIDEDTSEVVSIERNELLFQRGTLI
CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC
DQDVLAQIRFCYESGDITKDIEVSNQKRLAVELVNDYLQPYIAQATIDSKKCKFLFYATS
CHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
VDSALLLLKDYIELNFTAGFIINMVKEFDSCVILTDTLKEKKIDTLPLDFPDNDPDDKPD
HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCEEEEECHHHHCCCCCCCCCCCCCCCCCCCC
VDEEEEPKNCDRKFYQIETKILFDEDERSATFVVHTYNVDRAMMLITSYLKKKQDEHEQE
CCCCCCCCHHHHHHEEEEEEEEECCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
AKEKGNPFEKKEIHTMIEVAKPISVGRFIPREFSMAYSGK
HHHCCCCCHHHHHHHHHHHHCCHHHCCCCCHHHCCCCCCC
>Mature Secondary Structure
MIETKNNEIRYFTSDPQKMLNKYLAQRVLKTWTEDFIDEDTSEVVSIERNELLFQRGTLI
CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC
DQDVLAQIRFCYESGDITKDIEVSNQKRLAVELVNDYLQPYIAQATIDSKKCKFLFYATS
CHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
VDSALLLLKDYIELNFTAGFIINMVKEFDSCVILTDTLKEKKIDTLPLDFPDNDPDDKPD
HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCEEEEECHHHHCCCCCCCCCCCCCCCCCCCC
VDEEEEPKNCDRKFYQIETKILFDEDERSATFVVHTYNVDRAMMLITSYLKKKQDEHEQE
CCCCCCCCHHHHHHEEEEEEEEECCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
AKEKGNPFEKKEIHTMIEVAKPISVGRFIPREFSMAYSGK
HHHCCCCCHHHHHHHHHHHHCCHHHCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA