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The map label for this gene is yebA [H]

Identifier: 150007028

GI number: 150007028

Start: 425126

End: 425947

Strand: Reverse

Name: yebA [H]

Synonym: BDI_0371

Alternate gene names: 150007028

Gene position: 425947-425126 (Counterclockwise)

Preceding gene: 150007033

Following gene: 150007027

Centisome position: 8.85

GC content: 45.86

Gene sequence:

>822_bases
ATGGCATCTAAAATACACAATGGAATACTCATTCTTACGCTAATTTTATTTGCGTCTTGCCGTACGCAAAAGCCTGCTCC
ACGCCCGGCCCCTCCCAAGACTATGGATTTCCCTACGGCGAATATTCCTCTTCCTGTCATGGATTTCAATTTCATGTTGC
CGGAAGCTCCGGAGCTAGCGGTTTGCCATTCTCCTAGAAAAGATATCACGGAAGCCTTTACGCCCCGTGATAAAAGCCAG
ATAGCGATCAAGGACCCCAAGCTATTCGATGAGAATAACACGGAAATTATTGATTTATCCTTGATCCCCGCCGGGGAATA
CGCATTTCCCCTTCCTAATGGAAACGTGATCTCTCCTTACGGGGGAAGGAGAAGACATCATTCCGGAGTAGATATCAAGA
CTTGTGCCAACGATACGATCGTGTCTGCTTTCGATGGTATTGTCAGAATGGCGAAACCATTCGCCGCCTATGGCAACGTT
ATCGTTGTCCGCCATTATAATGGGCTGGAAACGATCTATAGCCACAACTCCAAGAACTTGGTTAAACCCGGAGATCGTGT
TCTCGCCGGACAACCGATCGCCTTAACCGGACGTACCGGCAGGGCTACTACCGAGCATTTACATTTTGAGACTCGTATAA
ACGGAGTTCATTTCAATCCGAATATCGTCTTCAACATGGCTAAAAGGAAATTACGTTCAAAATGTCTGGTTTGTACCCAG
AAAGGTAATAACGTAATCGTCAAATCGGTTGATATATTACCCCATCAAAAGGCTGGTCCATACGTACCGCCACCTCCTTA
TAAATGGGTTTACAATGAATGA

Upstream 100 bases:

>100_bases
TATCAGAAAAAACACAAAGAATAAAAAGAAGTATAAACATATCGGAAATATAGGTCATTGAAAGAGGCTTTTTTATACTT
TTGTGGTAAAACAATATCTA

Downstream 100 bases:

>100_bases
AAAAAGGTCTTACGGACAATCCGTAAGACCTTTTTTCATTCCGTGGAGATGGAGAGATTCGAACTCTCGTCCAAACGAGG
AATTAATTTGCTTTCTACAT

Product: putative metalloendopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MASKIHNGILILTLILFASCRTQKPAPRPAPPKTMDFPTANIPLPVMDFNFMLPEAPELAVCHSPRKDITEAFTPRDKSQ
IAIKDPKLFDENNTEIIDLSLIPAGEYAFPLPNGNVISPYGGRRRHHSGVDIKTCANDTIVSAFDGIVRMAKPFAAYGNV
IVVRHYNGLETIYSHNSKNLVKPGDRVLAGQPIALTGRTGRATTEHLHFETRINGVHFNPNIVFNMAKRKLRSKCLVCTQ
KGNNVIVKSVDILPHQKAGPYVPPPPYKWVYNE

Sequences:

>Translated_273_residues
MASKIHNGILILTLILFASCRTQKPAPRPAPPKTMDFPTANIPLPVMDFNFMLPEAPELAVCHSPRKDITEAFTPRDKSQ
IAIKDPKLFDENNTEIIDLSLIPAGEYAFPLPNGNVISPYGGRRRHHSGVDIKTCANDTIVSAFDGIVRMAKPFAAYGNV
IVVRHYNGLETIYSHNSKNLVKPGDRVLAGQPIALTGRTGRATTEHLHFETRINGVHFNPNIVFNMAKRKLRSKCLVCTQ
KGNNVIVKSVDILPHQKAGPYVPPPPYKWVYNE
>Mature_272_residues
ASKIHNGILILTLILFASCRTQKPAPRPAPPKTMDFPTANIPLPVMDFNFMLPEAPELAVCHSPRKDITEAFTPRDKSQI
AIKDPKLFDENNTEIIDLSLIPAGEYAFPLPNGNVISPYGGRRRHHSGVDIKTCANDTIVSAFDGIVRMAKPFAAYGNVI
VVRHYNGLETIYSHNSKNLVKPGDRVLAGQPIALTGRTGRATTEHLHFETRINGVHFNPNIVFNMAKRKLRSKCLVCTQK
GNNVIVKSVDILPHQKAGPYVPPPPYKWVYNE

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=194, Percent_Identity=33.5051546391753, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789099, Length=108, Percent_Identity=36.1111111111111, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082297, Length=93, Percent_Identity=37.6344086021505, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI87082174, Length=172, Percent_Identity=27.906976744186, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 30294; Mature: 30163

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASKIHNGILILTLILFASCRTQKPAPRPAPPKTMDFPTANIPLPVMDFNFMLPEAPELA
CCCCHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCEEECCCCCCEE
VCHSPRKDITEAFTPRDKSQIAIKDPKLFDENNTEIIDLSLIPAGEYAFPLPNGNVISPY
EECCCHHHHHHHCCCCCCCEEEEECCCEECCCCCEEEEEEEECCCCEEEECCCCCEECCC
GGRRRHHSGVDIKTCANDTIVSAFDGIVRMAKPFAAYGNVIVVRHYNGLETIYSHNSKNL
CCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCHHHHCCEEEEEECCCHHHHHHCCCCCC
VKPGDRVLAGQPIALTGRTGRATTEHLHFETRINGVHFNPNIVFNMAKRKLRSKCLVCTQ
CCCCCEEECCCCEEEECCCCCCCHHEEEEEEEECEEEECCCEEEHHHHHHHHCCEEEEEE
KGNNVIVKSVDILPHQKAGPYVPPPPYKWVYNE
CCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ASKIHNGILILTLILFASCRTQKPAPRPAPPKTMDFPTANIPLPVMDFNFMLPEAPELA
CCCHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCEEECCCCCCEE
VCHSPRKDITEAFTPRDKSQIAIKDPKLFDENNTEIIDLSLIPAGEYAFPLPNGNVISPY
EECCCHHHHHHHCCCCCCCEEEEECCCEECCCCCEEEEEEEECCCCEEEECCCCCEECCC
GGRRRHHSGVDIKTCANDTIVSAFDGIVRMAKPFAAYGNVIVVRHYNGLETIYSHNSKNL
CCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCHHHHCCEEEEEECCCHHHHHHCCCCCC
VKPGDRVLAGQPIALTGRTGRATTEHLHFETRINGVHFNPNIVFNMAKRKLRSKCLVCTQ
CCCCCEEECCCCEEEECCCCCCCHHEEEEEEEECEEEECCCEEEHHHHHHHHCCEEEEEE
KGNNVIVKSVDILPHQKAGPYVPPPPYKWVYNE
CCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]