Click here to switch to the map view.

The map label for this gene is atpD

Identifier: 150006935

GI number: 150006935

Start: 296711

End: 298228

Strand: Reverse

Name: atpD

Synonym: BDI_0271

Alternate gene names: 150006935

Gene position: 298228-296711 (Counterclockwise)

Preceding gene: 150006947

Following gene: 150006934

Centisome position: 6.2

GC content: 51.84

Gene sequence:

>1518_bases
ATGGGAGAAATAAAAGGCTATATCTCACAGGTTATCGGCCCGGTAGTGGATATCCACTTTGATTATGGGACAGAAGAAAC
AGTAACCCTCCCCCGTATCCACGACGCCATGGAGATTTCCCGCCCAAACGGAAAGATCTTGATCGTCGAAGTTCAGCAAC
ACATCGGGGAAAACACCGTCCGTACCGTAGCGATGGATACGACCGACGGATTGAGACGAGGCATGGAGGCCGTGTCATAC
GGAATGCCCATCACCATGCCGACCGGCGACCAAGTCAAAGGACGTTTAATGAATGTCACCGGCGACCCTATCGATGGCAT
GGCCCAGCTTACTAAAGACGGGGCTCTTCCCATCCATCGTGAGCCTCCTAAATTCGAGGATCTGACAACGACCCAAGAGG
TCTTGTACACGGGTATTAAAGTAATCGATTTATTGGAACCTTACGCCAAAGGAGGCAAGATCGGACTTTTCGGAGGAGCC
GGAGTCGGCAAAACGGTATTGATCATGGAATTGATCAACAACATCGCAAAGAAAAACAACGGATTCTCCGTCTTCGCCGG
TGTGGGTGAACGTACACGTGAAGGAAATGACCTATTGCGTGAAATGATCCAATCCGGTGTCATCCGATACGGCGAGGAGT
TTAAGAAGAGTATGGAGGCAGGCAACTGGGACTTGTCGAAGATCGATTACGATGAATTGGCTAAGTCGCAGGCTACCTTG
GTATTCGGGCAGATGAACGAACCGCCGGGCGCCCGCTCGTCCGTGGCCTTATCCGGTTTGACGATCGCCGAATCCTTCCG
TGACAAAGCCTCTGAGGGAGAAAGAAAAGATATATTATTCTTCATCGATAATATCTTCCGTTTCACCCAAGCCGGTTCCG
AGGTTTCCGCCTTGCTGGGGCGTATGCCTTCCGCCGTAGGTTACCAACCGACATTGGCCACGGAAATGGGAGCTATGCAA
GAGCGTATCACTTCAACCAAGAAGGGCTCCATCACCTCCGTACAGGCGGTGTATGTTCCTGCCGATGACTTGACAGACCC
AGCTCCGGCGACTACCTTTACGCACTTGGACGCAACAACCGTCCTCAGCCGCAAGATCACGGAACTCGGTATCTATCCGG
CCGTAGACCCGCTGGAATCCACCTCCCGCATCCTTGATCCGCTGATCGTAGGCAAGGAGCATTACGACACAGCGCAACGG
GTAAAACAAATCCTGCAACGGAACAAGGAACTTCAAGATATCATATCCATCCTCGGTATGGAAGAACTTTCCGACGAGGA
CAGGCTAACGGTCAACCGGGCCCGCCGTGTACAACGTTTTCTGTCCCAGCCCTTCTCCGTGGCAGAACAATTCACTGGCG
TACCCGGTGTCATGGTCTCTATAGAGGATACGATCCGGGGATTCAAGATGATCATGGACGGGGAAACGGATGACATACCC
GAACAGGCATTCTTAAACGTAGGAACCATCGAGGATGTCTTGGAGAAGGCCAAGCAGCTGAAAGAACAAGCAAATTAA

Upstream 100 bases:

>100_bases
AAAAAGACACAAAAAGTTCTATTTTCAAGGATCGAAACGCCATAAAACGTAATATTGCAACGACATTTTAATAGGTTAAG
ATAAATAACAAATAGGCTTT

Downstream 100 bases:

>100_bases
TCGATATGAAACTGGAAATTGTATCACCGGACGGCATTCTTTTCGAAGGCGAGACCGAATCTGTCTCATTCCCGGGAGTT
GCCGGTTCATTCGATATCTT

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta

Number of amino acids: Translated: 505; Mature: 504

Protein sequence:

>505_residues
MGEIKGYISQVIGPVVDIHFDYGTEETVTLPRIHDAMEISRPNGKILIVEVQQHIGENTVRTVAMDTTDGLRRGMEAVSY
GMPITMPTGDQVKGRLMNVTGDPIDGMAQLTKDGALPIHREPPKFEDLTTTQEVLYTGIKVIDLLEPYAKGGKIGLFGGA
GVGKTVLIMELINNIAKKNNGFSVFAGVGERTREGNDLLREMIQSGVIRYGEEFKKSMEAGNWDLSKIDYDELAKSQATL
VFGQMNEPPGARSSVALSGLTIAESFRDKASEGERKDILFFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGAMQ
ERITSTKKGSITSVQAVYVPADDLTDPAPATTFTHLDATTVLSRKITELGIYPAVDPLESTSRILDPLIVGKEHYDTAQR
VKQILQRNKELQDIISILGMEELSDEDRLTVNRARRVQRFLSQPFSVAEQFTGVPGVMVSIEDTIRGFKMIMDGETDDIP
EQAFLNVGTIEDVLEKAKQLKEQAN

Sequences:

>Translated_505_residues
MGEIKGYISQVIGPVVDIHFDYGTEETVTLPRIHDAMEISRPNGKILIVEVQQHIGENTVRTVAMDTTDGLRRGMEAVSY
GMPITMPTGDQVKGRLMNVTGDPIDGMAQLTKDGALPIHREPPKFEDLTTTQEVLYTGIKVIDLLEPYAKGGKIGLFGGA
GVGKTVLIMELINNIAKKNNGFSVFAGVGERTREGNDLLREMIQSGVIRYGEEFKKSMEAGNWDLSKIDYDELAKSQATL
VFGQMNEPPGARSSVALSGLTIAESFRDKASEGERKDILFFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGAMQ
ERITSTKKGSITSVQAVYVPADDLTDPAPATTFTHLDATTVLSRKITELGIYPAVDPLESTSRILDPLIVGKEHYDTAQR
VKQILQRNKELQDIISILGMEELSDEDRLTVNRARRVQRFLSQPFSVAEQFTGVPGVMVSIEDTIRGFKMIMDGETDDIP
EQAFLNVGTIEDVLEKAKQLKEQAN
>Mature_504_residues
GEIKGYISQVIGPVVDIHFDYGTEETVTLPRIHDAMEISRPNGKILIVEVQQHIGENTVRTVAMDTTDGLRRGMEAVSYG
MPITMPTGDQVKGRLMNVTGDPIDGMAQLTKDGALPIHREPPKFEDLTTTQEVLYTGIKVIDLLEPYAKGGKIGLFGGAG
VGKTVLIMELINNIAKKNNGFSVFAGVGERTREGNDLLREMIQSGVIRYGEEFKKSMEAGNWDLSKIDYDELAKSQATLV
FGQMNEPPGARSSVALSGLTIAESFRDKASEGERKDILFFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGAMQE
RITSTKKGSITSVQAVYVPADDLTDPAPATTFTHLDATTVLSRKITELGIYPAVDPLESTSRILDPLIVGKEHYDTAQRV
KQILQRNKELQDIISILGMEELSDEDRLTVNRARRVQRFLSQPFSVAEQFTGVPGVMVSIEDTIRGFKMIMDGETDDIPE
QAFLNVGTIEDVLEKAKQLKEQAN

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family

Homologues:

Organism=Homo sapiens, GI32189394, Length=502, Percent_Identity=62.9482071713147, Blast_Score=617, Evalue=1e-177,
Organism=Homo sapiens, GI19913424, Length=344, Percent_Identity=27.0348837209302, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI19913428, Length=445, Percent_Identity=23.8202247191011, Blast_Score=99, Evalue=8e-21,
Organism=Homo sapiens, GI19913426, Length=375, Percent_Identity=23.4666666666667, Blast_Score=91, Evalue=3e-18,
Organism=Escherichia coli, GI1790170, Length=495, Percent_Identity=60.6060606060606, Blast_Score=590, Evalue=1e-170,
Organism=Escherichia coli, GI1788251, Length=347, Percent_Identity=28.2420749279539, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1790172, Length=461, Percent_Identity=22.1258134490239, Blast_Score=84, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI25144756, Length=498, Percent_Identity=62.2489959839357, Blast_Score=602, Evalue=1e-172,
Organism=Caenorhabditis elegans, GI17565854, Length=344, Percent_Identity=27.0348837209302, Blast_Score=113, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17510931, Length=442, Percent_Identity=23.3031674208145, Blast_Score=105, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI17570191, Length=425, Percent_Identity=22.5882352941176, Blast_Score=96, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI71988080, Length=402, Percent_Identity=23.134328358209, Blast_Score=72, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI71988063, Length=402, Percent_Identity=23.134328358209, Blast_Score=72, Evalue=8e-13,
Organism=Saccharomyces cerevisiae, GI6322581, Length=491, Percent_Identity=62.7291242362525, Blast_Score=613, Evalue=1e-176,
Organism=Saccharomyces cerevisiae, GI6319603, Length=445, Percent_Identity=24.2696629213483, Blast_Score=104, Evalue=4e-23,
Organism=Saccharomyces cerevisiae, GI6320016, Length=249, Percent_Identity=26.5060240963855, Blast_Score=87, Evalue=6e-18,
Organism=Drosophila melanogaster, GI24638766, Length=500, Percent_Identity=62.2, Blast_Score=608, Evalue=1e-174,
Organism=Drosophila melanogaster, GI28574560, Length=496, Percent_Identity=61.8951612903226, Blast_Score=594, Evalue=1e-170,
Organism=Drosophila melanogaster, GI20129479, Length=341, Percent_Identity=26.6862170087977, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24583992, Length=367, Percent_Identity=26.158038147139, Blast_Score=112, Evalue=5e-25,
Organism=Drosophila melanogaster, GI24583988, Length=355, Percent_Identity=26.4788732394366, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24583986, Length=355, Percent_Identity=26.4788732394366, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24583984, Length=355, Percent_Identity=26.4788732394366, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI281361666, Length=445, Percent_Identity=24.0449438202247, Blast_Score=97, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24646341, Length=445, Percent_Identity=24.0449438202247, Blast_Score=97, Evalue=3e-20,
Organism=Drosophila melanogaster, GI17136796, Length=445, Percent_Identity=24.0449438202247, Blast_Score=97, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24638768, Length=97, Percent_Identity=46.3917525773196, Blast_Score=84, Evalue=3e-16,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): ATPB_PARD8 (A6L8P2)

Other databases:

- EMBL:   CP000140
- RefSeq:   YP_001301678.1
- ProteinModelPortal:   A6L8P2
- SMR:   A6L8P2
- STRING:   A6L8P2
- GeneID:   5305426
- GenomeReviews:   CP000140_GR
- KEGG:   pdi:BDI_0271
- eggNOG:   COG0055
- HOGENOM:   HBG565875
- OMA:   IGQEHYD
- ProtClustDB:   PRK09280
- BioCyc:   PDIS435591:BDI_0271-MONOMER
- HAMAP:   MF_01347
- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100
- PANTHER:   PTHR15184:SF8
- SMART:   SM00382
- TIGRFAMs:   TIGR01039

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N; SSF47917 ATPase_a/b_C; SSF50615 ATPase_a/b_N

EC number: =3.6.3.14

Molecular weight: Translated: 55482; Mature: 55351

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGEIKGYISQVIGPVVDIHFDYGTEETVTLPRIHDAMEISRPNGKILIVEVQQHIGENTV
CCHHHHHHHHHHHHHEEEEECCCCCCCEECCHHHHHHHHCCCCCCEEEEEEHHHCCCCCE
RTVAMDTTDGLRRGMEAVSYGMPITMPTGDQVKGRLMNVTGDPIDGMAQLTKDGALPIHR
EEEEECCHHHHHHHHHHHHCCCCEECCCCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCC
EPPKFEDLTTTQEVLYTGIKVIDLLEPYAKGGKIGLFGGAGVGKTVLIMELINNIAKKNN
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC
GFSVFAGVGERTREGNDLLREMIQSGVIRYGEEFKKSMEAGNWDLSKIDYDELAKSQATL
CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCEE
VFGQMNEPPGARSSVALSGLTIAESFRDKASEGERKDILFFIDNIFRFTQAGSEVSALLG
EEECCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHH
RMPSAVGYQPTLATEMGAMQERITSTKKGSITSVQAVYVPADDLTDPAPATTFTHLDATT
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEECCHHHH
VLSRKITELGIYPAVDPLESTSRILDPLIVGKEHYDTAQRVKQILQRNKELQDIISILGM
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHCHHHHHHHHHHCH
EELSDEDRLTVNRARRVQRFLSQPFSVAEQFTGVPGVMVSIEDTIRGFKMIMDGETDDIP
HHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCCEEEEEHHHHHHHHHEECCCCCCCC
EQAFLNVGTIEDVLEKAKQLKEQAN
HHHHCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GEIKGYISQVIGPVVDIHFDYGTEETVTLPRIHDAMEISRPNGKILIVEVQQHIGENTV
CHHHHHHHHHHHHHEEEEECCCCCCCEECCHHHHHHHHCCCCCCEEEEEEHHHCCCCCE
RTVAMDTTDGLRRGMEAVSYGMPITMPTGDQVKGRLMNVTGDPIDGMAQLTKDGALPIHR
EEEEECCHHHHHHHHHHHHCCCCEECCCCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCC
EPPKFEDLTTTQEVLYTGIKVIDLLEPYAKGGKIGLFGGAGVGKTVLIMELINNIAKKNN
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC
GFSVFAGVGERTREGNDLLREMIQSGVIRYGEEFKKSMEAGNWDLSKIDYDELAKSQATL
CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCEE
VFGQMNEPPGARSSVALSGLTIAESFRDKASEGERKDILFFIDNIFRFTQAGSEVSALLG
EEECCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHH
RMPSAVGYQPTLATEMGAMQERITSTKKGSITSVQAVYVPADDLTDPAPATTFTHLDATT
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEECCHHHH
VLSRKITELGIYPAVDPLESTSRILDPLIVGKEHYDTAQRVKQILQRNKELQDIISILGM
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHCHHHHHHHHHHCH
EELSDEDRLTVNRARRVQRFLSQPFSVAEQFTGVPGVMVSIEDTIRGFKMIMDGETDDIP
HHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCCEEEEEHHHHHHHHHEECCCCCCCC
EQAFLNVGTIEDVLEKAKQLKEQAN
HHHHCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA