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The map label for this gene is rpoE [C]

Identifier: 150006609

GI number: 150006609

Start: 5080239

End: 5080712

Strand: Direct

Name: rpoE [C]

Synonym: BVU_4129

Alternate gene names: 150006609

Gene position: 5080239-5080712 (Clockwise)

Preceding gene: 150006608

Following gene: 150006610

Centisome position: 98.39

GC content: 40.3

Gene sequence:

>474_bases
ATGAGTATAGAACAGGAATTTGCCGACAAGCTAGTGCAATACAAGCACATCATTTACAAGGTATGCTTCATGTATGCAGA
CAACAAGGACGATGTGAACGACCTTTTTCAAGAGTCTGTATTCAATATATGGAAGTCATACAAAAACTTCCGGGGGGAAA
GTTCGTTTGTCACATGGGTTTACCGCATATCCCTGAACACGTGTATCTCGGACTTCCGAAAGAAAAAGAAGTATGACTAT
GTACCTTTGGAACAGCAGGTAGATATTCTGGAAGATTGTGAACACAACGAACTGCTGAAAGAAATGTATTCACTCATCAA
ACGACTGAACAAGGTGGACCGTATGTTTATCCTGCTCTGGCTGGACGAGAAATCATACGATGAAATAGCCGAAATCACCG
GAACGAACCGCAATAATGTCGCGATAAAACTGCACCGTATAAAAGAGAAATTAAAAAATATGTCGAACTTGTAA

Upstream 100 bases:

>100_bases
ACCTGTAATACCTACTTTCAATACAAAGACTTTTTAGCACAAAGGTGTAACTTTCTCTTCTTTTCACCGACTAACCTAAT
AAAAACACCTTTGAAAGCTG

Downstream 100 bases:

>100_bases
TCATACAATTATATGGAACTTGAAGAATTGCAAAAAGCATGGAAAGAGTTGAATGAACGGGTCAGCCAGAATGAACTGGT
TCATCAGCAACAGATTATAG

Product: putative RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor SigX; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma-70 Factor; Sigma-; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Family RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-24 Factor; RNA Polymerase Ecf-Type Sigma Factor; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma Factor SigW; ECF Subfamily RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MSIEQEFADKLVQYKHIIYKVCFMYADNKDDVNDLFQESVFNIWKSYKNFRGESSFVTWVYRISLNTCISDFRKKKKYDY
VPLEQQVDILEDCEHNELLKEMYSLIKRLNKVDRMFILLWLDEKSYDEIAEITGTNRNNVAIKLHRIKEKLKNMSNL

Sequences:

>Translated_157_residues
MSIEQEFADKLVQYKHIIYKVCFMYADNKDDVNDLFQESVFNIWKSYKNFRGESSFVTWVYRISLNTCISDFRKKKKYDY
VPLEQQVDILEDCEHNELLKEMYSLIKRLNKVDRMFILLWLDEKSYDEIAEITGTNRNNVAIKLHRIKEKLKNMSNL
>Mature_156_residues
SIEQEFADKLVQYKHIIYKVCFMYADNKDDVNDLFQESVFNIWKSYKNFRGESSFVTWVYRISLNTCISDFRKKKKYDYV
PLEQQVDILEDCEHNELLKEMYSLIKRLNKVDRMFILLWLDEKSYDEIAEITGTNRNNVAIKLHRIKEKLKNMSNL

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19000; Mature: 18869

Theoretical pI: Translated: 7.43; Mature: 7.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIEQEFADKLVQYKHIIYKVCFMYADNKDDVNDLFQESVFNIWKSYKNFRGESSFVTWV
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
YRISLNTCISDFRKKKKYDYVPLEQQVDILEDCEHNELLKEMYSLIKRLNKVDRMFILLW
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEEEE
LDEKSYDEIAEITGTNRNNVAIKLHRIKEKLKNMSNL
ECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SIEQEFADKLVQYKHIIYKVCFMYADNKDDVNDLFQESVFNIWKSYKNFRGESSFVTWV
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
YRISLNTCISDFRKKKKYDYVPLEQQVDILEDCEHNELLKEMYSLIKRLNKVDRMFILLW
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEEEE
LDEKSYDEIAEITGTNRNNVAIKLHRIKEKLKNMSNL
ECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA