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The map label for this gene is araC [C]

Identifier: 150006603

GI number: 150006603

Start: 5071433

End: 5072323

Strand: Reverse

Name: araC [C]

Synonym: BVU_4123

Alternate gene names: 150006603

Gene position: 5072323-5071433 (Counterclockwise)

Preceding gene: 150006607

Following gene: 150006602

Centisome position: 98.24

GC content: 40.52

Gene sequence:

>891_bases
ATGTATAGATTGATGGACAGACAACAGATGCCTTTTCTCTTTAGATTTCTTTCGGATAGTGAACTGTATGCCTTTAAAGA
CGGACAGATTATTTCGACATTTAATAAATGTGGCCTTTTCTTTTGCCGGAAAGGAAATGTGGAGGTTTCACTGGAAGATA
AGCATTTTCAGATAAATCCCGGTGATGTGTATATTTACATGGCTTCTACCTTGGTGCATCTGCTTCATAAGAGTGAGGAT
GCGGAAGGGGTTATGGTTGAAGTGGATTTAGATTATATCATTCCTATCGTCAATAGGGTGATCAATGTGGAAAACCAGCT
TTTTATGCGGAAGCATCCTTGTATATCACTTTCGGATAAGCAACGTGCTCATTTGGAGTATCTGTTGGATAATTTGCGGG
AGAGGATAGAGGCGGAGGATGTGCAAGAGGTGAATTTGCAGCAACAACGCCTGACTTTGGAACTGATCAAGTCGATGGGG
CAGACTTTCTGCTATGAGATATTGAATATGTATTTTGCCAACCAACCCATGCAGCCCTTGCCGCAGAACAAGAAGGATGT
GATTTTTCAGAATTTCATGCTGGCTCTTTTCCGTTTGTATAGAAAGGAGCGTGATGTTGCTTATTATGCGAGGATGCAGC
ATATTACTCCACGTTATTTTTCCACCATCATTAAAGAGAAGTCGGGAAATAGTGCTTTGCAATGGATTGTGCAAATGGTG
ATTACCGAGGCAAAACAGTTGCTTGAAGGATCGGATCTGAGTATCAAGGAGATTGCAGACCAATTGAATTTCCCTACGCA
GTCTTTCTTTGGAAAGTATTTTAAGCAATATGTGGGGATTTCACCTAAAGAATATAGAAAAGGCAAGTTGAGGATTAAGG
ATGGAATTTGA

Upstream 100 bases:

>100_bases
AAGGTTGATATGAATGATAAATTGTCCGATTTGTATATTTTTGGGTTGTTATGTAGCTGGAAAGTTTACGATTTGTATTT
ATTTTGCAGTAAATTAAAGA

Downstream 100 bases:

>100_bases
TTTCAGAAAATGCAATCTATTTTATTTTAATATACCTTTGTGTACAAATCATAAACGTTTTATTTATGACCCGAAAGAAC
GAACAAGAGCGATTCATGTC

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; AraC Family Transcriptional Regulator; AraC-Type Transcription Regulator; Helix-Turn-Helix Domain-Containing Protein; AraC/XylS Family Transcriptional Regulator; AraC-Family Regulatory Protein; Transcription Regulator AraC-Type; Transcription Regulator; Regulator Of 4HPA-Hydroxylase Operon; Transcriptional Regulator Arac Family; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; AraC-Family Transcriptional Regulator; Helix-Turn-Helix- Domain Containing Protein AraC Type; AraC-Type Transcriptional Regulator; Transcriptional Regulator AraC Family Protein; Regulator Of 4hpa-Hydroxylase Operon

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MYRLMDRQQMPFLFRFLSDSELYAFKDGQIISTFNKCGLFFCRKGNVEVSLEDKHFQINPGDVYIYMASTLVHLLHKSED
AEGVMVEVDLDYIIPIVNRVINVENQLFMRKHPCISLSDKQRAHLEYLLDNLRERIEAEDVQEVNLQQQRLTLELIKSMG
QTFCYEILNMYFANQPMQPLPQNKKDVIFQNFMLALFRLYRKERDVAYYARMQHITPRYFSTIIKEKSGNSALQWIVQMV
ITEAKQLLEGSDLSIKEIADQLNFPTQSFFGKYFKQYVGISPKEYRKGKLRIKDGI

Sequences:

>Translated_296_residues
MYRLMDRQQMPFLFRFLSDSELYAFKDGQIISTFNKCGLFFCRKGNVEVSLEDKHFQINPGDVYIYMASTLVHLLHKSED
AEGVMVEVDLDYIIPIVNRVINVENQLFMRKHPCISLSDKQRAHLEYLLDNLRERIEAEDVQEVNLQQQRLTLELIKSMG
QTFCYEILNMYFANQPMQPLPQNKKDVIFQNFMLALFRLYRKERDVAYYARMQHITPRYFSTIIKEKSGNSALQWIVQMV
ITEAKQLLEGSDLSIKEIADQLNFPTQSFFGKYFKQYVGISPKEYRKGKLRIKDGI
>Mature_296_residues
MYRLMDRQQMPFLFRFLSDSELYAFKDGQIISTFNKCGLFFCRKGNVEVSLEDKHFQINPGDVYIYMASTLVHLLHKSED
AEGVMVEVDLDYIIPIVNRVINVENQLFMRKHPCISLSDKQRAHLEYLLDNLRERIEAEDVQEVNLQQQRLTLELIKSMG
QTFCYEILNMYFANQPMQPLPQNKKDVIFQNFMLALFRLYRKERDVAYYARMQHITPRYFSTIIKEKSGNSALQWIVQMV
ITEAKQLLEGSDLSIKEIADQLNFPTQSFFGKYFKQYVGISPKEYRKGKLRIKDGI

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34952; Mature: 34952

Theoretical pI: Translated: 8.28; Mature: 8.28

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRLMDRQQMPFLFRFLSDSELYAFKDGQIISTFNKCGLFFCRKGNVEVSLEDKHFQINP
CCCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHHHCCEEEEECCCEEEEEECCEEEECC
GDVYIYMASTLVHLLHKSEDAEGVMVEVDLDYIIPIVNRVINVENQLFMRKHPCISLSDK
CCEEEEHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
QRAHLEYLLDNLRERIEAEDVQEVNLQQQRLTLELIKSMGQTFCYEILNMYFANQPMQPL
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PQNKKDVIFQNFMLALFRLYRKERDVAYYARMQHITPRYFSTIIKEKSGNSALQWIVQMV
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHH
ITEAKQLLEGSDLSIKEIADQLNFPTQSFFGKYFKQYVGISPKEYRKGKLRIKDGI
HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHCCCCEEECCCC
>Mature Secondary Structure
MYRLMDRQQMPFLFRFLSDSELYAFKDGQIISTFNKCGLFFCRKGNVEVSLEDKHFQINP
CCCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHHHCCEEEEECCCEEEEEECCEEEECC
GDVYIYMASTLVHLLHKSEDAEGVMVEVDLDYIIPIVNRVINVENQLFMRKHPCISLSDK
CCEEEEHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
QRAHLEYLLDNLRERIEAEDVQEVNLQQQRLTLELIKSMGQTFCYEILNMYFANQPMQPL
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PQNKKDVIFQNFMLALFRLYRKERDVAYYARMQHITPRYFSTIIKEKSGNSALQWIVQMV
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHH
ITEAKQLLEGSDLSIKEIADQLNFPTQSFFGKYFKQYVGISPKEYRKGKLRIKDGI
HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA