Click here to switch to the map view.

The map label for this gene is ybeX [C]

Identifier: 150006579

GI number: 150006579

Start: 5041143

End: 5042426

Strand: Reverse

Name: ybeX [C]

Synonym: BVU_4099

Alternate gene names: 150006579

Gene position: 5042426-5041143 (Counterclockwise)

Preceding gene: 150006580

Following gene: 150006578

Centisome position: 97.66

GC content: 41.12

Gene sequence:

>1284_bases
ATGGGAGCTATCATAGCTATCTTGTTAGCTGTTTTATTGTTGTATGCCTCAGGCTTTGTGTCTGCTTCGGAAATAGCTTT
CTTTTCCCTTTCACCTGTTGATTTAAGTGAGATAGAGGAAGGAAAACATACTTCGGACAGGCGTATCAGCGCCCTGCTGA
ATGATTCCGAACGCTTGTTAGCGACTATTCTTATCTCTAATAATTTTGTCAATGTAACCATTATCATGCTGTGCAATTAC
TTTTTTGCCAGCACCATACACTTTGGAAATTCCGTGATTCTGGAATTCCTGCTAATAACGGTTGTCCTTACTTTTCTGCT
GTTGCTTTTCGGTGAAATCATGCCTAAAATTTATTCGGCACAGAACACGTTGAAGTTTTGCCGTAAGGCAGCTCCTGCCA
TTTCTTTTTTAAAGAAATTCTTTTCACCTTTGTCGGCATTGCTGGTCCGTTCTTCCTTTTTGGTGAACAGATGTGTGGCA
AAAAAGAATTATAATATTTCTGTCGACGAACTTTCACAGGCTTTGGAACTGACGGACAAGAGTGAGATTTCAGAGGAAAG
CAATATTTTGGAAGGTATTATCCGTTTTGGTGAGGAAACGGCTAAGGAAGTGATGACTTCCCGGCTGGATATGGTGGACT
TGGAAATCAATACTCCTTATTCCGATGTGTTGAAATGTATTGTGGAAAATGCCTATTCCCGTATTCCGGTATATGCCGAA
TCGCGGGATAATATAAAGGGGATTCTTTATATAAAGGATTTGCTTCCTCATTTGGGCAAGGGCGACAACTTTCGTTGGCA
GACATTGGTCCGTCCTGCTTACTTTGTACCTGAAACGAAGATGATTGATGACCTTTTGCGTGATTTTCAGGCGAACAAGA
TCCATATTGCCATCGTTGTCGATGAGTTTGGAGGTACTTCGGGCATTGTTACAATGGAGGATATCATCGAGGAGATTGTA
GGAGAGATTAATGATGAATACGATGATGAAGAGCGTACGTATGTGAAACTGAATGACCGTACCTATATATTCGAGGCAAA
AACCTTGCTGTCCGATTTTTATAAGATTATGAAAGCTGATCCCGCTCTTTTCGAGAAAGTGGAAGGAGATGCGGACACTT
TGGCCGGTTTGTTGCTGGAAATAAAAGGGGAGTTTCCTGTATTGCACGAGCGGTTAGATTATGGGAATTATCATTTTGAG
GTACTTGAAATGAATACGCGCCGCATTTTGAAAGTAAAAGTTATCGTTGACTCTTCCAGCTCCGTGGAAGAAGAAAAGAA
ATAG

Upstream 100 bases:

>100_bases
AGAACTTGATGTTTAACTAAAACCAGATTCCTTGGACCCTGACTCGTATTTATGCCGCTTGGCGGATTTATTTGACGGTG
TAACCGTAACAGCTCCTACC

Downstream 100 bases:

>100_bases
ATTTTATTATGCCTTTATACCGTACTTATATCGAAGGGGAGTTTCTGCTTGGAATATGGAAGTCTGATGAAACAACGGAA
CAACTGCTGGCATCATTGGA

Product: CorC/HlyC family transporter associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 426

Protein sequence:

>427_residues
MGAIIAILLAVLLLYASGFVSASEIAFFSLSPVDLSEIEEGKHTSDRRISALLNDSERLLATILISNNFVNVTIIMLCNY
FFASTIHFGNSVILEFLLITVVLTFLLLLFGEIMPKIYSAQNTLKFCRKAAPAISFLKKFFSPLSALLVRSSFLVNRCVA
KKNYNISVDELSQALELTDKSEISEESNILEGIIRFGEETAKEVMTSRLDMVDLEINTPYSDVLKCIVENAYSRIPVYAE
SRDNIKGILYIKDLLPHLGKGDNFRWQTLVRPAYFVPETKMIDDLLRDFQANKIHIAIVVDEFGGTSGIVTMEDIIEEIV
GEINDEYDDEERTYVKLNDRTYIFEAKTLLSDFYKIMKADPALFEKVEGDADTLAGLLLEIKGEFPVLHERLDYGNYHFE
VLEMNTRRILKVKVIVDSSSSVEEEKK

Sequences:

>Translated_427_residues
MGAIIAILLAVLLLYASGFVSASEIAFFSLSPVDLSEIEEGKHTSDRRISALLNDSERLLATILISNNFVNVTIIMLCNY
FFASTIHFGNSVILEFLLITVVLTFLLLLFGEIMPKIYSAQNTLKFCRKAAPAISFLKKFFSPLSALLVRSSFLVNRCVA
KKNYNISVDELSQALELTDKSEISEESNILEGIIRFGEETAKEVMTSRLDMVDLEINTPYSDVLKCIVENAYSRIPVYAE
SRDNIKGILYIKDLLPHLGKGDNFRWQTLVRPAYFVPETKMIDDLLRDFQANKIHIAIVVDEFGGTSGIVTMEDIIEEIV
GEINDEYDDEERTYVKLNDRTYIFEAKTLLSDFYKIMKADPALFEKVEGDADTLAGLLLEIKGEFPVLHERLDYGNYHFE
VLEMNTRRILKVKVIVDSSSSVEEEKK
>Mature_426_residues
GAIIAILLAVLLLYASGFVSASEIAFFSLSPVDLSEIEEGKHTSDRRISALLNDSERLLATILISNNFVNVTIIMLCNYF
FASTIHFGNSVILEFLLITVVLTFLLLLFGEIMPKIYSAQNTLKFCRKAAPAISFLKKFFSPLSALLVRSSFLVNRCVAK
KNYNISVDELSQALELTDKSEISEESNILEGIIRFGEETAKEVMTSRLDMVDLEINTPYSDVLKCIVENAYSRIPVYAES
RDNIKGILYIKDLLPHLGKGDNFRWQTLVRPAYFVPETKMIDDLLRDFQANKIHIAIVVDEFGGTSGIVTMEDIIEEIVG
EINDEYDDEERTYVKLNDRTYIFEAKTLLSDFYKIMKADPALFEKVEGDADTLAGLLLEIKGEFPVLHERLDYGNYHFEV
LEMNTRRILKVKVIVDSSSSVEEEKK

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=305, Percent_Identity=31.4754098360656, Blast_Score=141, Evalue=1e-33,
Organism=Homo sapiens, GI40068053, Length=368, Percent_Identity=29.3478260869565, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI40068055, Length=368, Percent_Identity=29.3478260869565, Blast_Score=105, Evalue=8e-23,
Organism=Homo sapiens, GI94681046, Length=346, Percent_Identity=28.3236994219653, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI40068051, Length=303, Percent_Identity=26.4026402640264, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI40068049, Length=245, Percent_Identity=31.4285714285714, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI1786879, Length=235, Percent_Identity=34.468085106383, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI145693175, Length=409, Percent_Identity=27.1393643031785, Blast_Score=141, Evalue=9e-35,
Organism=Escherichia coli, GI87082033, Length=344, Percent_Identity=25.8720930232558, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1790664, Length=444, Percent_Identity=19.5945945945946, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1788119, Length=420, Percent_Identity=23.3333333333333, Blast_Score=80, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71980512, Length=361, Percent_Identity=31.0249307479224, Blast_Score=105, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17539402, Length=256, Percent_Identity=30.46875, Blast_Score=75, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 48334; Mature: 48203

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGAIIAILLAVLLLYASGFVSASEIAFFSLSPVDLSEIEEGKHTSDRRISALLNDSERLL
CCHHHHHHHHHHHHHHCCCCCHHHEEEEECCCCCHHHHHCCCCCCHHHHHHHHCCHHHHH
ATILISNNFVNVTIIMLCNYFFASTIHFGNSVILEFLLITVVLTFLLLLFGEIMPKIYSA
HHHHEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QNTLKFCRKAAPAISFLKKFFSPLSALLVRSSFLVNRCVAKKNYNISVDELSQALELTDK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCH
SEISEESNILEGIIRFGEETAKEVMTSRLDMVDLEINTPYSDVLKCIVENAYSRIPVYAE
HHCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHCCCEEEC
SRDNIKGILYIKDLLPHLGKGDNFRWQTLVRPAYFVPETKMIDDLLRDFQANKIHIAIVV
CCCCCEEEEEHHHHHHHCCCCCCCEEHEECCCHHCCCCHHHHHHHHHHCCCCEEEEEEEE
DEFGGTSGIVTMEDIIEEIVGEINDEYDDEERTYVKLNDRTYIFEAKTLLSDFYKIMKAD
ECCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEEEHHHHHHHHHHHHHHCC
PALFEKVEGDADTLAGLLLEIKGEFPVLHERLDYGNYHFEVLEMNTRRILKVKVIVDSSS
HHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHCCCCEEEEEEEECCCEEEEEEEEECCCC
SVEEEKK
CCHHCCC
>Mature Secondary Structure 
GAIIAILLAVLLLYASGFVSASEIAFFSLSPVDLSEIEEGKHTSDRRISALLNDSERLL
CHHHHHHHHHHHHHHCCCCCHHHEEEEECCCCCHHHHHCCCCCCHHHHHHHHCCHHHHH
ATILISNNFVNVTIIMLCNYFFASTIHFGNSVILEFLLITVVLTFLLLLFGEIMPKIYSA
HHHHEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QNTLKFCRKAAPAISFLKKFFSPLSALLVRSSFLVNRCVAKKNYNISVDELSQALELTDK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCH
SEISEESNILEGIIRFGEETAKEVMTSRLDMVDLEINTPYSDVLKCIVENAYSRIPVYAE
HHCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHCCCEEEC
SRDNIKGILYIKDLLPHLGKGDNFRWQTLVRPAYFVPETKMIDDLLRDFQANKIHIAIVV
CCCCCEEEEEHHHHHHHCCCCCCCEEHEECCCHHCCCCHHHHHHHHHHCCCCEEEEEEEE
DEFGGTSGIVTMEDIIEEIVGEINDEYDDEERTYVKLNDRTYIFEAKTLLSDFYKIMKAD
ECCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEEEHHHHHHHHHHHHHHCC
PALFEKVEGDADTLAGLLLEIKGEFPVLHERLDYGNYHFEVLEMNTRRILKVKVIVDSSS
HHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHCCCCEEEEEEEECCCEEEEEEEEECCCC
SVEEEKK
CCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]