Click here to switch to the map view.

The map label for this gene is yfbE [C]

Identifier: 150006507

GI number: 150006507

Start: 4958969

End: 4960084

Strand: Reverse

Name: yfbE [C]

Synonym: BVU_4027

Alternate gene names: 150006507

Gene position: 4960084-4958969 (Counterclockwise)

Preceding gene: 150006508

Following gene: 150006506

Centisome position: 96.07

GC content: 37.1

Gene sequence:

>1116_bases
ATGAGAAATATTAGATTGTCCAAATCTTGCATTGGTAAGGAAGAAATAGATGCCGTAACAGACGTTCTTCATAGAGAGTA
TTTGGGTATGGGACAGGATGTACATAAATTTGAAGATGATTTAAAAGATTTCTTTGGGCGTGACGTGACACTTGTAAATA
CTGGTACGGCAGCTTTGCATCTTGCAGTACAAGGTGTAGGAATAAAAGATGGAGATGAAGTACTTGTACAGTCTCTTACA
TATGTGGCTTGTTTTCAAGCTATAAGAGCTACAGGTGGGATACCTGTGGCGTGCGATGTGGATGATGATACGCTTACTAT
CGATTTGGATGATGCCGAACGTAAACTGACTCCAAAAACGAAGGCTATAATGCCTGTACATTATGCTGGACAATGTGGTA
ATCTTGATGCTATATATGAATTTGCAAAAAAGCATAATCTACGAGTAATAGAAGATGCATCACATGCATTTGGCACTTAT
TATAAAGGTCGGTTAATAGGATCTTTTGGTGATGTGGTGTGTATAAGTATGGATGGTATCAAGAATATAACATCTGGTGA
AGGAGGGATGATAATTACTGAGGACCTTGATGTACAGAAAATAATTAAGGATGCTCGCCTTTTGAGTGTACAGAATGATA
CCGATAGTAGATTCAAGGGTACAAGAACATGGGTGTTTGATGTCAATCAACCGGGGTGGCGTTATCATATGAGTAATATC
ATGGCCGCAATAGGTTATACTCAGCTGAAGAAATTTCCTAAGTTTAAAGAAATACGTCAAAGGCTGGCAAAAATTTATCA
GCAAGAACTTGATAATGTAAAGGGAATAAAAATTATACCCTGTAATTATAATGAAGTGGTTCCTCATATCTTTGTTATTA
GAATAACTTGTGGCAAGAGGGATATTGTGAAACAATGTTTGAATGACAATGGGGTGGCAACAGGCATACATTATCGCCCC
AACCATTTGCTTACATTGTTTACAGGTAATCAAAATAATACGACTCTTAAGCATACGGACGAGATTTACGAACAACTCAT
CACTCTTCCATTACATGCCGATATGGTAGAGGATGACGTATATTATATTTGTGGACTAATTAAAAAGAGTATATGA

Upstream 100 bases:

>100_bases
ATATACGTGAAAAAAATCTATTGGAACAGTTGCTTATTGATGGAGTTGCTCCATGGAAAAAATGGGAAAGAGAAATACCG
ATAATAAAATGATGATGTTT

Downstream 100 bases:

>100_bases
TGGAGGATAAACCTCTAGTAAGTATAATTGTTAATTGCTATAATGGTGAAAAGTATCTTAGGGAAACAATAGATAGTATA
TTGAACCAAACATATCATAA

Product: putative pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MRNIRLSKSCIGKEEIDAVTDVLHREYLGMGQDVHKFEDDLKDFFGRDVTLVNTGTAALHLAVQGVGIKDGDEVLVQSLT
YVACFQAIRATGGIPVACDVDDDTLTIDLDDAERKLTPKTKAIMPVHYAGQCGNLDAIYEFAKKHNLRVIEDASHAFGTY
YKGRLIGSFGDVVCISMDGIKNITSGEGGMIITEDLDVQKIIKDARLLSVQNDTDSRFKGTRTWVFDVNQPGWRYHMSNI
MAAIGYTQLKKFPKFKEIRQRLAKIYQQELDNVKGIKIIPCNYNEVVPHIFVIRITCGKRDIVKQCLNDNGVATGIHYRP
NHLLTLFTGNQNNTTLKHTDEIYEQLITLPLHADMVEDDVYYICGLIKKSI

Sequences:

>Translated_371_residues
MRNIRLSKSCIGKEEIDAVTDVLHREYLGMGQDVHKFEDDLKDFFGRDVTLVNTGTAALHLAVQGVGIKDGDEVLVQSLT
YVACFQAIRATGGIPVACDVDDDTLTIDLDDAERKLTPKTKAIMPVHYAGQCGNLDAIYEFAKKHNLRVIEDASHAFGTY
YKGRLIGSFGDVVCISMDGIKNITSGEGGMIITEDLDVQKIIKDARLLSVQNDTDSRFKGTRTWVFDVNQPGWRYHMSNI
MAAIGYTQLKKFPKFKEIRQRLAKIYQQELDNVKGIKIIPCNYNEVVPHIFVIRITCGKRDIVKQCLNDNGVATGIHYRP
NHLLTLFTGNQNNTTLKHTDEIYEQLITLPLHADMVEDDVYYICGLIKKSI
>Mature_371_residues
MRNIRLSKSCIGKEEIDAVTDVLHREYLGMGQDVHKFEDDLKDFFGRDVTLVNTGTAALHLAVQGVGIKDGDEVLVQSLT
YVACFQAIRATGGIPVACDVDDDTLTIDLDDAERKLTPKTKAIMPVHYAGQCGNLDAIYEFAKKHNLRVIEDASHAFGTY
YKGRLIGSFGDVVCISMDGIKNITSGEGGMIITEDLDVQKIIKDARLLSVQNDTDSRFKGTRTWVFDVNQPGWRYHMSNI
MAAIGYTQLKKFPKFKEIRQRLAKIYQQELDNVKGIKIIPCNYNEVVPHIFVIRITCGKRDIVKQCLNDNGVATGIHYRP
NHLLTLFTGNQNNTTLKHTDEIYEQLITLPLHADMVEDDVYYICGLIKKSI

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=372, Percent_Identity=33.3333333333333, Blast_Score=206, Evalue=2e-54,
Organism=Escherichia coli, GI2367285, Length=343, Percent_Identity=30.6122448979592, Blast_Score=124, Evalue=8e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 41691; Mature: 41691

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNIRLSKSCIGKEEIDAVTDVLHREYLGMGQDVHKFEDDLKDFFGRDVTLVNTGTAALH
CCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCEEEE
LAVQGVGIKDGDEVLVQSLTYVACFQAIRATGGIPVACDVDDDTLTIDLDDAERKLTPKT
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCCCCCCCH
KAIMPVHYAGQCGNLDAIYEFAKKHNLRVIEDASHAFGTYYKGRLIGSFGDVVCISMDGI
HEEEEEEECCCCCCHHHHHHHHHHCCCEEEECCCHHHCHHCCCEEEECCCCEEEEEECCC
KNITSGEGGMIITEDLDVQKIIKDARLLSVQNDTDSRFKGTRTWVFDVNQPGWRYHMSNI
CCCCCCCCCEEEECCCCHHHHHHHHHEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHH
MAAIGYTQLKKFPKFKEIRQRLAKIYQQELDNVKGIKIIPCNYNEVVPHIFVIRITCGKR
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHCCEEEEEEEECCCH
DIVKQCLNDNGVATGIHYRPNHLLTLFTGNQNNTTLKHTDEIYEQLITLPLHADMVEDDV
HHHHHHHCCCCCEEEEEECCCEEEEEEECCCCCCEECHHHHHHHHHHHCCCCCCHHHHHH
YYICGLIKKSI
HHHHHHHHHCC
>Mature Secondary Structure
MRNIRLSKSCIGKEEIDAVTDVLHREYLGMGQDVHKFEDDLKDFFGRDVTLVNTGTAALH
CCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCEEEE
LAVQGVGIKDGDEVLVQSLTYVACFQAIRATGGIPVACDVDDDTLTIDLDDAERKLTPKT
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCCCCCCCH
KAIMPVHYAGQCGNLDAIYEFAKKHNLRVIEDASHAFGTYYKGRLIGSFGDVVCISMDGI
HEEEEEEECCCCCCHHHHHHHHHHCCCEEEECCCHHHCHHCCCEEEECCCCEEEEEECCC
KNITSGEGGMIITEDLDVQKIIKDARLLSVQNDTDSRFKGTRTWVFDVNQPGWRYHMSNI
CCCCCCCCCEEEECCCCHHHHHHHHHEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHH
MAAIGYTQLKKFPKFKEIRQRLAKIYQQELDNVKGIKIIPCNYNEVVPHIFVIRITCGKR
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHCCEEEEEEEECCCH
DIVKQCLNDNGVATGIHYRPNHLLTLFTGNQNNTTLKHTDEIYEQLITLPLHADMVEDDV
HHHHHHHCCCCCEEEEEECCCEEEEEEECCCCCCEECHHHHHHHHHHHCCCCCCHHHHHH
YYICGLIKKSI
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]