Click here to switch to the map view.

The map label for this gene is yjbQ [H]

Identifier: 150006098

GI number: 150006098

Start: 4473758

End: 4474183

Strand: Reverse

Name: yjbQ [H]

Synonym: BVU_3607

Alternate gene names: 150006098

Gene position: 4474183-4473758 (Counterclockwise)

Preceding gene: 150006099

Following gene: 150006096

Centisome position: 86.66

GC content: 41.55

Gene sequence:

>426_bases
TTGATAATAGTTATGGTATCTCAGACAGAATTTACGCTTCGTCCCCGTACCAGGGGATTTCACCTGATTACTGATGAAGT
GGTGCGCAATTTGCCGCCACTTCCCCAAACAGGTTTGCTTTATTTGTTCATCAAACATACTAGTGCGGCATTAAGTATCA
ATGAAAATGCCGATCCGGATGTCCGTACGGATATGGAATCTATTTTTAATCATTTGATAAAGGAACGTAAGCCTTATTAC
GAACATACTTTAGAAGGTTGGGATGACATGCCTGCTCATGCAAAAGCAACAATTATAGGCGTCAGCCTCACTATTCCTAT
TACAGAAGGTCGGTTGAATATGGGTATTTGGCAGGGAATTTACCTTTGTGAGTTCCGCAACCATGGAGGTGGTCGTAAAA
TTGTAGCTACTGTAATGGGGGAATAA

Upstream 100 bases:

>100_bases
GACCGGCCTTGGTTATAGGTGTTTTGCTTTTTGTGGGTGTATCCTTATTTAATATAGTAGCGGTACGTCGTAAAGTGGCA
TCTATATGGATGCATAAAGG

Downstream 100 bases:

>100_bases
TTTTTTCAGATGTTCATCCGGGTTATTATTTATTTAAAAAAATAGATTAATTCCACTTTAATCAGAACTCTTTTTTTAAC
TTTGTACCAATTCTTGAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MIIVMVSQTEFTLRPRTRGFHLITDEVVRNLPPLPQTGLLYLFIKHTSAALSINENADPDVRTDMESIFNHLIKERKPYY
EHTLEGWDDMPAHAKATIIGVSLTIPITEGRLNMGIWQGIYLCEFRNHGGGRKIVATVMGE

Sequences:

>Translated_141_residues
MIIVMVSQTEFTLRPRTRGFHLITDEVVRNLPPLPQTGLLYLFIKHTSAALSINENADPDVRTDMESIFNHLIKERKPYY
EHTLEGWDDMPAHAKATIIGVSLTIPITEGRLNMGIWQGIYLCEFRNHGGGRKIVATVMGE
>Mature_141_residues
MIIVMVSQTEFTLRPRTRGFHLITDEVVRNLPPLPQTGLLYLFIKHTSAALSINENADPDVRTDMESIFNHLIKERKPYY
EHTLEGWDDMPAHAKATIIGVSLTIPITEGRLNMGIWQGIYLCEFRNHGGGRKIVATVMGE

Specific function: Unknown

COG id: COG0432

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0047 family [H]

Homologues:

Organism=Escherichia coli, GI1790491, Length=139, Percent_Identity=48.9208633093525, Blast_Score=144, Evalue=2e-36,
Organism=Drosophila melanogaster, GI221476594, Length=135, Percent_Identity=51.8518518518518, Blast_Score=151, Evalue=1e-37,
Organism=Drosophila melanogaster, GI221476589, Length=135, Percent_Identity=51.8518518518518, Blast_Score=150, Evalue=2e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001602 [H]

Pfam domain/function: PF01894 UPF0047 [H]

EC number: NA

Molecular weight: Translated: 15989; Mature: 15989

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIVMVSQTEFTLRPRTRGFHLITDEVVRNLPPLPQTGLLYLFIKHTSAALSINENADPD
CEEEEEECCEEEECCCCCCEEEEHHHHHHCCCCCCCCCEEEEEEECCCEEEEECCCCCCC
VRTDMESIFNHLIKERKPYYEHTLEGWDDMPAHAKATIIGVSLTIPITEGRLNMGIWQGI
HHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCEECEE
YLCEFRNHGGGRKIVATVMGE
EEEEECCCCCCEEEEEEEECC
>Mature Secondary Structure
MIIVMVSQTEFTLRPRTRGFHLITDEVVRNLPPLPQTGLLYLFIKHTSAALSINENADPD
CEEEEEECCEEEECCCCCCEEEEHHHHHHCCCCCCCCCEEEEEEECCCEEEEECCCCCCC
VRTDMESIFNHLIKERKPYYEHTLEGWDDMPAHAKATIIGVSLTIPITEGRLNMGIWQGI
HHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCEECEE
YLCEFRNHGGGRKIVATVMGE
EEEEECCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]