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The map label for this gene is yjkA [H]

Identifier: 150005822

GI number: 150005822

Start: 4153165

End: 4153962

Strand: Reverse

Name: yjkA [H]

Synonym: BVU_3318

Alternate gene names: 150005822

Gene position: 4153962-4153165 (Counterclockwise)

Preceding gene: 150005823

Following gene: 150005821

Centisome position: 80.45

GC content: 42.11

Gene sequence:

>798_bases
ATGGGAACAATTGATATAGACTATGGCAGTTTGGGAATAGGATTGCTGCTGATGCTTATTCCGGTTTATTTTTTATGGCA
TTTCAAGACGGGCTTGCTTAAACCGGTTCTGATAGGCACGGTACGTATGATTATACAGTTGTTTTTGATTGGGGCTTATC
TTCGTTTTCTGTTTGAATGGAACAATCCGTTTATCAATTTTCTATGGGTGATCATCATGGTTGGGGTGGCTGCTGAAACG
GCTTTGACGCGTACGCGGTTAAAACGTGGAATTTTGATGATTCCAATCTCTATCGCTTTTTTTGTAACAGTGGTGCTCGT
CGGACTTTATTTTCTTGGTTTTGTATTAAAGTTGGATAACATCTTCAGTGCCCAGTATTTTATTCCGGTTTTTGGTATAA
TCATGGGGAATATGTTGGGAGTGAATGTGATAGGATTAAATACTTACTATGCCGGATTGCGTAGGGAACAGCAACTTTAT
TATTTTCTGTTGGGGAATGGCGCTACCCGTAATGAGGCGATAGCTCCATTTGTGCGTCAGGCTCTTATTAAAGCGTTCAG
CCCGGGCATTGCCAATATGGCAGTAACAGGGCTTGTTGCATTGCCGGGAACTATGATTGGGCAGATATTGGGAGGAAGTT
CGCCACATGTGGCTATCAAATATCAGATTATGATTGTAGTTATCACTGTGGTGGCATCCATGCTTTCACTAATGATGACC
ATTTTTCTGGCCTCACGGAAATCATTCGACAGTTATGGCCGGTTGTTACGGGTTCATAAGGATACCAAACGGAAGTAG

Upstream 100 bases:

>100_bases
TTAAATCCTTGTGCAGTAAAGGAATGACTATCTTGTCTGTTTCGCATGACAAACAGTTTGCCGCCGGATGCGACAAGGTA
TTTACTTTATAATCTGACTG

Downstream 100 bases:

>100_bases
GGGCCTTATTCTTGCTTTGTATACATTTTATATATTTCTTTCAATAAAATAGAAAAACATGAATGAGCAAATTTGGAAAT
ATATAGCAGAATTATCAACT

Product: putative ABC transport system, membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MGTIDIDYGSLGIGLLLMLIPVYFLWHFKTGLLKPVLIGTVRMIIQLFLIGAYLRFLFEWNNPFINFLWVIIMVGVAAET
ALTRTRLKRGILMIPISIAFFVTVVLVGLYFLGFVLKLDNIFSAQYFIPVFGIIMGNMLGVNVIGLNTYYAGLRREQQLY
YFLLGNGATRNEAIAPFVRQALIKAFSPGIANMAVTGLVALPGTMIGQILGGSSPHVAIKYQIMIVVITVVASMLSLMMT
IFLASRKSFDSYGRLLRVHKDTKRK

Sequences:

>Translated_265_residues
MGTIDIDYGSLGIGLLLMLIPVYFLWHFKTGLLKPVLIGTVRMIIQLFLIGAYLRFLFEWNNPFINFLWVIIMVGVAAET
ALTRTRLKRGILMIPISIAFFVTVVLVGLYFLGFVLKLDNIFSAQYFIPVFGIIMGNMLGVNVIGLNTYYAGLRREQQLY
YFLLGNGATRNEAIAPFVRQALIKAFSPGIANMAVTGLVALPGTMIGQILGGSSPHVAIKYQIMIVVITVVASMLSLMMT
IFLASRKSFDSYGRLLRVHKDTKRK
>Mature_264_residues
GTIDIDYGSLGIGLLLMLIPVYFLWHFKTGLLKPVLIGTVRMIIQLFLIGAYLRFLFEWNNPFINFLWVIIMVGVAAETA
LTRTRLKRGILMIPISIAFFVTVVLVGLYFLGFVLKLDNIFSAQYFIPVFGIIMGNMLGVNVIGLNTYYAGLRREQQLYY
FLLGNGATRNEAIAPFVRQALIKAFSPGIANMAVTGLVALPGTMIGQILGGSSPHVAIKYQIMIVVITVVASMLSLMMTI
FLASRKSFDSYGRLLRVHKDTKRK

Specific function: Unknown

COG id: COG0390

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0014 family [H]

Homologues:

Organism=Escherichia coli, GI87081746, Length=259, Percent_Identity=29.3436293436293, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005226 [H]

Pfam domain/function: PF03649 UPF0014 [H]

EC number: NA

Molecular weight: Translated: 29542; Mature: 29411

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTIDIDYGSLGIGLLLMLIPVYFLWHFKTGLLKPVLIGTVRMIIQLFLIGAYLRFLFEW
CCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NNPFINFLWVIIMVGVAAETALTRTRLKRGILMIPISIAFFVTVVLVGLYFLGFVLKLDN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
IFSAQYFIPVFGIIMGNMLGVNVIGLNTYYAGLRREQQLYYFLLGNGATRNEAIAPFVRQ
HHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHH
ALIKAFSPGIANMAVTGLVALPGTMIGQILGGSSPHVAIKYQIMIVVITVVASMLSLMMT
HHHHHHCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHH
IFLASRKSFDSYGRLLRVHKDTKRK
HHHHHHCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GTIDIDYGSLGIGLLLMLIPVYFLWHFKTGLLKPVLIGTVRMIIQLFLIGAYLRFLFEW
CEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NNPFINFLWVIIMVGVAAETALTRTRLKRGILMIPISIAFFVTVVLVGLYFLGFVLKLDN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
IFSAQYFIPVFGIIMGNMLGVNVIGLNTYYAGLRREQQLYYFLLGNGATRNEAIAPFVRQ
HHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHH
ALIKAFSPGIANMAVTGLVALPGTMIGQILGGSSPHVAIKYQIMIVVITVVASMLSLMMT
HHHHHHCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHH
IFLASRKSFDSYGRLLRVHKDTKRK
HHHHHHCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9579062; 9384377 [H]