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The map label for this gene is atpD

Identifier: 150005509

GI number: 150005509

Start: 3792004

End: 3793539

Strand: Direct

Name: atpD

Synonym: BVU_2993

Alternate gene names: 150005509

Gene position: 3792004-3793539 (Clockwise)

Preceding gene: 150005508

Following gene: 150005510

Centisome position: 73.44

GC content: 47.27

Gene sequence:

>1536_bases
ATGTCACAGATTATTGGACATATTTCACAAGTTATCGGACCGGTAGTCGATGTGTATTTTGAGGGCAAAGGCATCGACAC
CGATCTGCTTCTTCCAAGCATTCATGATGCATTGACTATCAAACGCAATGACGGCAGAATTCTAGTCGTGGAAGTTCAAC
AACACATTGGTGAAGACACAGTGCGTACTGTAGCTATGGATAGTACGGACGGTTTGCAACGTGGTATGGAAGTAATTCCG
ACAGGACATCCTATTACTATGCCGGTTGGTAATCAGATTAAAGGCCGGTTGATGAACGTAGTAGGTGAGGCTGTGGACGG
TATGCGCCCGTTGAGTAAGGAAGGGGCGTTTCCCATTCACCGTGAGCCCCCTAAGTTTGATGAATTGTCTACTGTGCAGG
AAGTGCTCTTCACAGGTATCAAGGTTATTGATTTGCTGGAACCTTATTCAAAGGGTGGTAAAATCGGATTGTTTGGGGGG
GCCGGTGTAGGCAAGACTGTGCTTATTATGGAGCTGATTAACAACATTGCCAAGAAACATAACGGCTTTTCTGTTTTTGC
CGGAGTCGGTGAACGTACACGTGAAGGCAACGACCTGTTGCGTGAAATGATTGAATCTGGTGTAATCCGCTACGGAGAAG
AATTTAAGAAAAGCATGGAAGAAGGTCATTGGGATCTTTCCAAAGTAGATTATAATGAAGTTGAAAAGTCACAGGCCACA
TTGGTGTACGGACAGATGAACGAGCCTCCCGGCGCGCGTTCTTCCATTGCCCTTTCGGGGCTGACCGTTGCCGAATCTTT
CCGTGACCGCAAAAACGGTGACAGCAACGGACCACGTGACATTTTGTTCTTTATCGACAATATATTCCGTTTCACTCAGG
CAGGTTCCGAGGTTTCGGCTTTGTTGGGCCGTATGCCGTCAGCCGTGGGGTACCAACCGACATTGGCAACGGAAATGGGA
CAGATGCAGGAACGTATCACTTCTACCAAGAATGGTTCTATCACCTCGGTACAGGCTGTGTATGTACCTGCTGATGACTT
GACAGACCCTGCGCCCGCTACTACATTTACTCACTTGGATGCAACGACCGTATTGAGCCGTAAAATTACCGAACTGGGTA
TTTATCCGGCTGTAGATCCGTTGGAATCAACCTCACGTATTCTTGATCCGCTGATTGTAGGGCAGGAGCACTATGATGTG
GCTCAGCGTGTGAAGCAGATATTGCAGCGCAACAAGGAGTTGCAAGATATCATTTCTATTTTGGGTATGGACGAATTGAG
TGATGAAGATCGTCAGACTGTAAACCGTGCGCGTCGGGTGCAGCGGTTCCTTTCACAACCGTTTGCCGTAGCCGAACAGT
TTACAGGTGTGCCGGGTGTCATGGTTTCTATCGAAGATACGATAAAAGGATTCAAGATGATTTTGGACGGTGAGGTGGAT
TACTTGCCGGAACAGGCATTCCTGAATGTAGGAACGATAGAGGAAGCAATAGAAAAGGGAAAGAAGTTGCTGGATGCTGC
CAGCCATAAGAAATAA

Upstream 100 bases:

>100_bases
CTTTGCTGCGCATATAAAGCAAAAGGTAGGTAAACAAAAAGCCTGCGATATTTGTTAATATAGAAAAGGTAAATTATCAA
ATAAAAGTAAATAGAAGCTT

Downstream 100 bases:

>100_bases
AAGTAAGTATGGAACATCATGAAGATCTTCATTTGATAGTGGTTTCTCCGGAAAGTACTTTGTTTGACGGCAAAGTGGAA
ATAGTGACACTACCGGGGGA

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta

Number of amino acids: Translated: 511; Mature: 510

Protein sequence:

>511_residues
MSQIIGHISQVIGPVVDVYFEGKGIDTDLLLPSIHDALTIKRNDGRILVVEVQQHIGEDTVRTVAMDSTDGLQRGMEVIP
TGHPITMPVGNQIKGRLMNVVGEAVDGMRPLSKEGAFPIHREPPKFDELSTVQEVLFTGIKVIDLLEPYSKGGKIGLFGG
AGVGKTVLIMELINNIAKKHNGFSVFAGVGERTREGNDLLREMIESGVIRYGEEFKKSMEEGHWDLSKVDYNEVEKSQAT
LVYGQMNEPPGARSSIALSGLTVAESFRDRKNGDSNGPRDILFFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG
QMQERITSTKNGSITSVQAVYVPADDLTDPAPATTFTHLDATTVLSRKITELGIYPAVDPLESTSRILDPLIVGQEHYDV
AQRVKQILQRNKELQDIISILGMDELSDEDRQTVNRARRVQRFLSQPFAVAEQFTGVPGVMVSIEDTIKGFKMILDGEVD
YLPEQAFLNVGTIEEAIEKGKKLLDAASHKK

Sequences:

>Translated_511_residues
MSQIIGHISQVIGPVVDVYFEGKGIDTDLLLPSIHDALTIKRNDGRILVVEVQQHIGEDTVRTVAMDSTDGLQRGMEVIP
TGHPITMPVGNQIKGRLMNVVGEAVDGMRPLSKEGAFPIHREPPKFDELSTVQEVLFTGIKVIDLLEPYSKGGKIGLFGG
AGVGKTVLIMELINNIAKKHNGFSVFAGVGERTREGNDLLREMIESGVIRYGEEFKKSMEEGHWDLSKVDYNEVEKSQAT
LVYGQMNEPPGARSSIALSGLTVAESFRDRKNGDSNGPRDILFFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG
QMQERITSTKNGSITSVQAVYVPADDLTDPAPATTFTHLDATTVLSRKITELGIYPAVDPLESTSRILDPLIVGQEHYDV
AQRVKQILQRNKELQDIISILGMDELSDEDRQTVNRARRVQRFLSQPFAVAEQFTGVPGVMVSIEDTIKGFKMILDGEVD
YLPEQAFLNVGTIEEAIEKGKKLLDAASHKK
>Mature_510_residues
SQIIGHISQVIGPVVDVYFEGKGIDTDLLLPSIHDALTIKRNDGRILVVEVQQHIGEDTVRTVAMDSTDGLQRGMEVIPT
GHPITMPVGNQIKGRLMNVVGEAVDGMRPLSKEGAFPIHREPPKFDELSTVQEVLFTGIKVIDLLEPYSKGGKIGLFGGA
GVGKTVLIMELINNIAKKHNGFSVFAGVGERTREGNDLLREMIESGVIRYGEEFKKSMEEGHWDLSKVDYNEVEKSQATL
VYGQMNEPPGARSSIALSGLTVAESFRDRKNGDSNGPRDILFFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQ
MQERITSTKNGSITSVQAVYVPADDLTDPAPATTFTHLDATTVLSRKITELGIYPAVDPLESTSRILDPLIVGQEHYDVA
QRVKQILQRNKELQDIISILGMDELSDEDRQTVNRARRVQRFLSQPFAVAEQFTGVPGVMVSIEDTIKGFKMILDGEVDY
LPEQAFLNVGTIEEAIEKGKKLLDAASHKK

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family

Homologues:

Organism=Homo sapiens, GI32189394, Length=503, Percent_Identity=64.8111332007952, Blast_Score=626, Evalue=1e-179,
Organism=Homo sapiens, GI19913424, Length=349, Percent_Identity=27.5071633237822, Blast_Score=105, Evalue=2e-22,
Organism=Homo sapiens, GI19913428, Length=373, Percent_Identity=23.0563002680965, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI50345984, Length=427, Percent_Identity=22.248243559719, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI4757810, Length=427, Percent_Identity=22.248243559719, Blast_Score=78, Evalue=2e-14,
Organism=Escherichia coli, GI1790170, Length=498, Percent_Identity=61.8473895582329, Blast_Score=595, Evalue=1e-171,
Organism=Escherichia coli, GI1788251, Length=367, Percent_Identity=26.9754768392371, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1790172, Length=451, Percent_Identity=22.6164079822616, Blast_Score=95, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI25144756, Length=498, Percent_Identity=62.85140562249, Blast_Score=604, Evalue=1e-173,
Organism=Caenorhabditis elegans, GI17565854, Length=347, Percent_Identity=27.3775216138329, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17510931, Length=429, Percent_Identity=22.6107226107226, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17570191, Length=359, Percent_Identity=22.8412256267409, Blast_Score=84, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71988063, Length=422, Percent_Identity=22.7488151658768, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71988080, Length=422, Percent_Identity=22.7488151658768, Blast_Score=80, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6322581, Length=494, Percent_Identity=62.753036437247, Blast_Score=610, Evalue=1e-175,
Organism=Saccharomyces cerevisiae, GI6319603, Length=458, Percent_Identity=22.9257641921397, Blast_Score=84, Evalue=6e-17,
Organism=Saccharomyces cerevisiae, GI6320016, Length=225, Percent_Identity=26.6666666666667, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24638766, Length=503, Percent_Identity=63.4194831013916, Blast_Score=617, Evalue=1e-177,
Organism=Drosophila melanogaster, GI28574560, Length=503, Percent_Identity=60.8349900596421, Blast_Score=584, Evalue=1e-167,
Organism=Drosophila melanogaster, GI20129479, Length=344, Percent_Identity=27.0348837209302, Blast_Score=110, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24583992, Length=348, Percent_Identity=27.0114942528736, Blast_Score=108, Evalue=6e-24,
Organism=Drosophila melanogaster, GI24583988, Length=348, Percent_Identity=26.7241379310345, Blast_Score=105, Evalue=8e-23,
Organism=Drosophila melanogaster, GI24583986, Length=348, Percent_Identity=26.7241379310345, Blast_Score=105, Evalue=8e-23,
Organism=Drosophila melanogaster, GI24583984, Length=348, Percent_Identity=26.7241379310345, Blast_Score=105, Evalue=8e-23,
Organism=Drosophila melanogaster, GI24638768, Length=98, Percent_Identity=50, Blast_Score=89, Evalue=7e-18,
Organism=Drosophila melanogaster, GI281361666, Length=448, Percent_Identity=22.9910714285714, Blast_Score=87, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24646341, Length=448, Percent_Identity=22.9910714285714, Blast_Score=87, Evalue=3e-17,
Organism=Drosophila melanogaster, GI17136796, Length=448, Percent_Identity=22.9910714285714, Blast_Score=87, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24658560, Length=421, Percent_Identity=22.3277909738717, Blast_Score=79, Evalue=7e-15,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): ATPB_BACV8 (A6L4L7)

Other databases:

- EMBL:   CP000139
- RefSeq:   YP_001300253.1
- ProteinModelPortal:   A6L4L7
- SMR:   A6L4L7
- STRING:   A6L4L7
- GeneID:   5303954
- GenomeReviews:   CP000139_GR
- KEGG:   bvu:BVU_2993
- NMPDR:   fig|435590.6.peg.2804
- eggNOG:   COG0055
- HOGENOM:   HBG565875
- OMA:   IGQEHYD
- ProtClustDB:   PRK09280
- HAMAP:   MF_01347
- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100
- PANTHER:   PTHR15184:SF8
- SMART:   SM00382
- TIGRFAMs:   TIGR01039

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N; SSF47917 ATPase_a/b_C; SSF50615 ATPase_a/b_N

EC number: =3.6.3.14

Molecular weight: Translated: 56121; Mature: 55990

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQIIGHISQVIGPVVDVYFEGKGIDTDLLLPSIHDALTIKRNDGRILVVEVQQHIGEDT
CHHHHHHHHHHHHHHHHHEECCCCCCHHHHCCCCCCEEEEEECCCEEEEEEEHHHCCCHH
VRTVAMDSTDGLQRGMEVIPTGHPITMPVGNQIKGRLMNVVGEAVDGMRPLSKEGAFPIH
HHEEECCCCHHHHCCHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
REPPKFDELSTVQEVLFTGIKVIDLLEPYSKGGKIGLFGGAGVGKTVLIMELINNIAKKH
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC
NGFSVFAGVGERTREGNDLLREMIESGVIRYGEEFKKSMEEGHWDLSKVDYNEVEKSQAT
CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHCCCEE
LVYGQMNEPPGARSSIALSGLTVAESFRDRKNGDSNGPRDILFFIDNIFRFTQAGSEVSA
EEEECCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHH
LLGRMPSAVGYQPTLATEMGQMQERITSTKNGSITSVQAVYVPADDLTDPAPATTFTHLD
HHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCEEECCH
ATTVLSRKITELGIYPAVDPLESTSRILDPLIVGQEHYDVAQRVKQILQRNKELQDIISI
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHH
LGMDELSDEDRQTVNRARRVQRFLSQPFAVAEQFTGVPGVMVSIEDTIKGFKMILDGEVD
HCCHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCEEEEEHHHHHHHHHHCCCCHH
YLPEQAFLNVGTIEEAIEKGKKLLDAASHKK
HCCHHHHCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SQIIGHISQVIGPVVDVYFEGKGIDTDLLLPSIHDALTIKRNDGRILVVEVQQHIGEDT
HHHHHHHHHHHHHHHHHEECCCCCCHHHHCCCCCCEEEEEECCCEEEEEEEHHHCCCHH
VRTVAMDSTDGLQRGMEVIPTGHPITMPVGNQIKGRLMNVVGEAVDGMRPLSKEGAFPIH
HHEEECCCCHHHHCCHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
REPPKFDELSTVQEVLFTGIKVIDLLEPYSKGGKIGLFGGAGVGKTVLIMELINNIAKKH
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC
NGFSVFAGVGERTREGNDLLREMIESGVIRYGEEFKKSMEEGHWDLSKVDYNEVEKSQAT
CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHCCCEE
LVYGQMNEPPGARSSIALSGLTVAESFRDRKNGDSNGPRDILFFIDNIFRFTQAGSEVSA
EEEECCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHH
LLGRMPSAVGYQPTLATEMGQMQERITSTKNGSITSVQAVYVPADDLTDPAPATTFTHLD
HHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCEEECCH
ATTVLSRKITELGIYPAVDPLESTSRILDPLIVGQEHYDVAQRVKQILQRNKELQDIISI
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHH
LGMDELSDEDRQTVNRARRVQRFLSQPFAVAEQFTGVPGVMVSIEDTIKGFKMILDGEVD
HCCHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCEEEEEHHHHHHHHHHCCCCHH
YLPEQAFLNVGTIEEAIEKGKKLLDAASHKK
HCCHHHHCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA