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The map label for this gene is licD [H]

Identifier: 150005470

GI number: 150005470

Start: 3750727

End: 3751560

Strand: Direct

Name: licD [H]

Synonym: BVU_2953

Alternate gene names: 150005470

Gene position: 3750727-3751560 (Clockwise)

Preceding gene: 150005469

Following gene: 150005471

Centisome position: 72.64

GC content: 36.45

Gene sequence:

>834_bases
ATGACGAACGAATATGAGCATTTAAATGCAATACAGAAAATTGGGCTGAGTATATTGAAAGAGATTATTGCTATCTGTAA
ACGCCATGATTTGACGTACTATGTATATGGAGGAACATTGTTAGGAGCTATTCGTCATCAAGGCTTTATTCCGTGGGATG
ATGATGTGGATATTGCAATGTCCCGCAAAGATTTCGAGAAATTAAAGCAATATCAAAATGAATTTCCACAATATATGTTT
TTAGATACAATTCAACAGAAAGGGCATCAATGGACAGCAGCTCATGTCGTGGATACAAGATATAAGCTTGAGGTAGGAAA
GGGGATGAAAAAAGCCACGATGTCTGTTTGGGTGGATATTCTTATTATTGACGGTGTTCCAAATCCTGGAACTTTCAAAT
ACAAGATATTTAGTGCGGCATATTTGACAGCAAGACTGCTCTATAAATTCTCAAATTTTAGTAATGAAGTTGATTTAGAA
AAAGATAGATCTGCTATAGAGACCTTTTTTATTTCTTTTGCTAGGATTACTCATATTGAAAAGGTGATAAATCAGCATTG
GGCTGGATGTTTCATTGATTGGATATCTCGCAGGTACGATTTGGATAAATGTGAGTATGGAGCCACTTTGGGTGGTCCGC
AAAAAATGGGTGAAACACAGCCTAAATACTGGTTTGGTAAAGGTAAAGAACTTCTTTTTGAGGATATTATCGTGAATGGT
ATGGAGGAAACGGAGAATTTCCTTACTAAGTTCTATGGTCCCAATTACATGACTCCTCCGCCCTTGGATAAAAGAAACCA
GCATAATGTAAGGTTAGTTGAGAAGATTGTTTAA

Upstream 100 bases:

>100_bases
AGGCAAGACTAGACAGTACAAAACTTCAGGAACTTGGCTGGAAATCCATATATGATATTCAATCGGGGATACAAAGAACA
ATCAAAATATTGAGTGAATT

Downstream 100 bases:

>100_bases
ATCGTAATAGTTGTAAATATAGTTTTAAATATTCACATGAAAGACACTGAAAAAAACTTGTGAGAGTGCTATTTATTTAT
ATTCAATGTTTATTTTAAAA

Product: lipopolysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 276

Protein sequence:

>277_residues
MTNEYEHLNAIQKIGLSILKEIIAICKRHDLTYYVYGGTLLGAIRHQGFIPWDDDVDIAMSRKDFEKLKQYQNEFPQYMF
LDTIQQKGHQWTAAHVVDTRYKLEVGKGMKKATMSVWVDILIIDGVPNPGTFKYKIFSAAYLTARLLYKFSNFSNEVDLE
KDRSAIETFFISFARITHIEKVINQHWAGCFIDWISRRYDLDKCEYGATLGGPQKMGETQPKYWFGKGKELLFEDIIVNG
MEETENFLTKFYGPNYMTPPPLDKRNQHNVRLVEKIV

Sequences:

>Translated_277_residues
MTNEYEHLNAIQKIGLSILKEIIAICKRHDLTYYVYGGTLLGAIRHQGFIPWDDDVDIAMSRKDFEKLKQYQNEFPQYMF
LDTIQQKGHQWTAAHVVDTRYKLEVGKGMKKATMSVWVDILIIDGVPNPGTFKYKIFSAAYLTARLLYKFSNFSNEVDLE
KDRSAIETFFISFARITHIEKVINQHWAGCFIDWISRRYDLDKCEYGATLGGPQKMGETQPKYWFGKGKELLFEDIIVNG
MEETENFLTKFYGPNYMTPPPLDKRNQHNVRLVEKIV
>Mature_276_residues
TNEYEHLNAIQKIGLSILKEIIAICKRHDLTYYVYGGTLLGAIRHQGFIPWDDDVDIAMSRKDFEKLKQYQNEFPQYMFL
DTIQQKGHQWTAAHVVDTRYKLEVGKGMKKATMSVWVDILIIDGVPNPGTFKYKIFSAAYLTARLLYKFSNFSNEVDLEK
DRSAIETFFISFARITHIEKVINQHWAGCFIDWISRRYDLDKCEYGATLGGPQKMGETQPKYWFGKGKELLFEDIIVNGM
EETENFLTKFYGPNYMTPPPLDKRNQHNVRLVEKIV

Specific function: Transfers phosphorylcholine (ChoP) from choline diphosphonucleoside to the lipopolysaccharide (LPS) [H]

COG id: COG3475

COG function: function code M; LPS biosynthesis protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the licD transferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007074 [H]

Pfam domain/function: PF04991 LicD [H]

EC number: NA

Molecular weight: Translated: 32308; Mature: 32176

Theoretical pI: Translated: 7.65; Mature: 7.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNEYEHLNAIQKIGLSILKEIIAICKRHDLTYYVYGGTLLGAIRHQGFIPWDDDVDIAM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCCCCCEE
SRKDFEKLKQYQNEFPQYMFLDTIQQKGHQWTAAHVVDTRYKLEVGKGMKKATMSVWVDI
CHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEHEEECCCEEEHHCCCHHHHHHHHHEEE
LIIDGVPNPGTFKYKIFSAAYLTARLLYKFSNFSNEVDLEKDRSAIETFFISFARITHIE
EEECCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
KVINQHWAGCFIDWISRRYDLDKCEYGATLGGPQKMGETQPKYWFGKGKELLFEDIIVNG
HHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHCCCCCCCEECCCCHHHHHHHHHHCC
MEETENFLTKFYGPNYMTPPPLDKRNQHNVRLVEKIV
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCC
>Mature Secondary Structure 
TNEYEHLNAIQKIGLSILKEIIAICKRHDLTYYVYGGTLLGAIRHQGFIPWDDDVDIAM
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCCCCCEE
SRKDFEKLKQYQNEFPQYMFLDTIQQKGHQWTAAHVVDTRYKLEVGKGMKKATMSVWVDI
CHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEHEEECCCEEEHHCCCHHHHHHHHHEEE
LIIDGVPNPGTFKYKIFSAAYLTARLLYKFSNFSNEVDLEKDRSAIETFFISFARITHIE
EEECCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
KVINQHWAGCFIDWISRRYDLDKCEYGATLGGPQKMGETQPKYWFGKGKELLFEDIIVNG
HHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHCCCCCCCEECCCCHHHHHHHHHHCC
MEETENFLTKFYGPNYMTPPPLDKRNQHNVRLVEKIV
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2479481; 7542800; 10632893 [H]