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The map label for this gene is ykgF [H]

Identifier: 150005397

GI number: 150005397

Start: 3641759

End: 3643126

Strand: Direct

Name: ykgF [H]

Synonym: BVU_2877

Alternate gene names: 150005397

Gene position: 3641759-3643126 (Clockwise)

Preceding gene: 150005396

Following gene: 150005398

Centisome position: 70.53

GC content: 43.35

Gene sequence:

>1368_bases
ATGAGTACGAAACATTCAAAAGCAGCTGCGGAGTTTCTGAAAAACAAGAAACAGGCCGCATGGCATGACGAAACACTTTG
GCTGGTTAGGGCAAAGCGTGACAGACTGAGTAAAGAAGTTCCCGAATGGGAGGAATTGCGTAATATGGCATGTGCTACTA
AACTATATAGTAACAGCCATTTGGACGAATTATTGGTGGAGTTTGAAAACAATGCGCGTGCTAACGGAGCTCATGTCTAT
TGGGCAAAGGATGCGGATGAGTATTGTAACATTGTCTACAATATTCTGAACCAGCACGGAGTGAAGCATTTTATAAAAAG
CAAATCCATGTTGGCCGAGGAGTGTGAACTTAATCCTTTTTTGGAAAGCAAAGGGATTGAAGTGGTAGAAAGCGACTTGG
GAGAGCGTATCTTGCAATTGATGCATCTGAAGCCGAGCCATATTGTATTGCCTGCTATTCATATCAAACGTGAACAGGTA
GGTGAGCTTTTCGAGCGAGAGATGGGTACGGAGAAAGGAAATTTTGACCCTACTTACCTTACACATGCAGCCCGGAAAAA
TCTCCGTCAGAAATTTATTCATGCTGAGGCGGCTATGACAGGTGCTAACTTTGCTGTAGCTTCTACTGGTGAGATTGTGG
TATGTACCAATGAAGGAAATGCGGATATGGGTACTTCCCAGCCTAAATTACAGATTGCGGCTTTTGGTATGGAAAAAATT
GTGCCGGATCGTGAATCATTGGGAGTGTTCACCCGTTTGTTGGCCCGTTCGGCTACAGGACAACCCATTACTACATATAC
TTCTCATTATCGAAAGCCTAGAGAGGGTGGGGAACTTCATATTATTATTGTAGATAACGGACGTAGTAAGATATTAGCCG
ACCCAAAGCATATCAAGACTTTGAATTGTATTCGTTGTGGAGCCTGTATGAATACATGTCCTGTATATAGACGTAGTGGG
GGGTACTCTTATACTTATTTTATTCCCGGCCCTATCGGGATTAACCTGGGGATGTTGAAGGCGCCGTTACATTATTATGA
CAATGTGTCGGCTTGTTCTTTGTGTTATTCCTGTTCGTTTGTATGTCCGGCTAAAGTGGATTTGGCGGAGCAGATCTATT
TGTGGCGCCAGGATTTGGATAAATTGGGTAAGGCAGACCGGATGAAAAAGGTAATGTCCGGTGGCATGGAATTCATGATG
AAGCGCCCTTCGATATTCAATATGGCATTAAAATGGGCGCCATTGGTAAACGGAGTGCCGCGTTTTCTTATCTATAACGG
ATTGAATGACTGGGGGAAAGGACGTGAAATGCCGAAATTTGCTAAGGAGAGTTTCAATGAAATGTGGAAGAAAGGTAAAG
TGAAGTAA

Upstream 100 bases:

>100_bases
GGGCCGACAGTTCGTGCCTGATGCATCAGAATGGTATCATTGCCCGTGACAAACTTCCTATCAAGACATTGCACATTGTT
GAAATCTTAGCGGCAGGATT

Downstream 100 bases:

>100_bases
ATTATGAGCAGCAGAGAAGATATATTGCAGAGCATCCGGCGTGCTACACATGTAAAATATGAGAAACCGGATTTAAAGCC
ATTGGAAGATATGGCATTGA

Product: putative electron transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 454

Protein sequence:

>455_residues
MSTKHSKAAAEFLKNKKQAAWHDETLWLVRAKRDRLSKEVPEWEELRNMACATKLYSNSHLDELLVEFENNARANGAHVY
WAKDADEYCNIVYNILNQHGVKHFIKSKSMLAEECELNPFLESKGIEVVESDLGERILQLMHLKPSHIVLPAIHIKREQV
GELFEREMGTEKGNFDPTYLTHAARKNLRQKFIHAEAAMTGANFAVASTGEIVVCTNEGNADMGTSQPKLQIAAFGMEKI
VPDRESLGVFTRLLARSATGQPITTYTSHYRKPREGGELHIIIVDNGRSKILADPKHIKTLNCIRCGACMNTCPVYRRSG
GYSYTYFIPGPIGINLGMLKAPLHYYDNVSACSLCYSCSFVCPAKVDLAEQIYLWRQDLDKLGKADRMKKVMSGGMEFMM
KRPSIFNMALKWAPLVNGVPRFLIYNGLNDWGKGREMPKFAKESFNEMWKKGKVK

Sequences:

>Translated_455_residues
MSTKHSKAAAEFLKNKKQAAWHDETLWLVRAKRDRLSKEVPEWEELRNMACATKLYSNSHLDELLVEFENNARANGAHVY
WAKDADEYCNIVYNILNQHGVKHFIKSKSMLAEECELNPFLESKGIEVVESDLGERILQLMHLKPSHIVLPAIHIKREQV
GELFEREMGTEKGNFDPTYLTHAARKNLRQKFIHAEAAMTGANFAVASTGEIVVCTNEGNADMGTSQPKLQIAAFGMEKI
VPDRESLGVFTRLLARSATGQPITTYTSHYRKPREGGELHIIIVDNGRSKILADPKHIKTLNCIRCGACMNTCPVYRRSG
GYSYTYFIPGPIGINLGMLKAPLHYYDNVSACSLCYSCSFVCPAKVDLAEQIYLWRQDLDKLGKADRMKKVMSGGMEFMM
KRPSIFNMALKWAPLVNGVPRFLIYNGLNDWGKGREMPKFAKESFNEMWKKGKVK
>Mature_454_residues
STKHSKAAAEFLKNKKQAAWHDETLWLVRAKRDRLSKEVPEWEELRNMACATKLYSNSHLDELLVEFENNARANGAHVYW
AKDADEYCNIVYNILNQHGVKHFIKSKSMLAEECELNPFLESKGIEVVESDLGERILQLMHLKPSHIVLPAIHIKREQVG
ELFEREMGTEKGNFDPTYLTHAARKNLRQKFIHAEAAMTGANFAVASTGEIVVCTNEGNADMGTSQPKLQIAAFGMEKIV
PDRESLGVFTRLLARSATGQPITTYTSHYRKPREGGELHIIIVDNGRSKILADPKHIKTLNCIRCGACMNTCPVYRRSGG
YSYTYFIPGPIGINLGMLKAPLHYYDNVSACSLCYSCSFVCPAKVDLAEQIYLWRQDLDKLGKADRMKKVMSGGMEFMMK
RPSIFNMALKWAPLVNGVPRFLIYNGLNDWGKGREMPKFAKESFNEMWKKGKVK

Specific function: Unknown

COG id: COG1139

COG function: function code C; Uncharacterized conserved protein containing a ferredoxin-like domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1786498, Length=441, Percent_Identity=36.734693877551, Blast_Score=296, Evalue=1e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR003741
- InterPro:   IPR004452
- InterPro:   IPR002698
- InterPro:   IPR012285
- InterPro:   IPR009051 [H]

Pfam domain/function: PF02589 DUF162 [H]

EC number: NA

Molecular weight: Translated: 51551; Mature: 51420

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTKHSKAAAEFLKNKKQAAWHDETLWLVRAKRDRLSKEVPEWEELRNMACATKLYSNSH
CCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
LDELLVEFENNARANGAHVYWAKDADEYCNIVYNILNQHGVKHFIKSKSMLAEECELNPF
HHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
LESKGIEVVESDLGERILQLMHLKPSHIVLPAIHIKREQVGELFEREMGTEKGNFDPTYL
HHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
THAARKNLRQKFIHAEAAMTGANFAVASTGEIVVCTNEGNADMGTSQPKLQIAAFGMEKI
HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECCCCCCCCCCCCCEEEEEECHHHH
VPDRESLGVFTRLLARSATGQPITTYTSHYRKPREGGELHIIIVDNGRSKILADPKHIKT
CCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCEEEEEEECCCCCEECCHHHHCH
LNCIRCGACMNTCPVYRRSGGYSYTYFIPGPIGINLGMLKAPLHYYDNVSACSLCYSCSF
HHHHHHHHHHHCCCHHCCCCCCEEEEEECCCCCCCCHHHHCCHHHHCCHHHHHHHHHCCC
VCPAKVDLAEQIYLWRQDLDKLGKADRMKKVMSGGMEFMMKRPSIFNMALKWAPLVNGVP
CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCCC
RFLIYNGLNDWGKGREMPKFAKESFNEMWKKGKVK
CEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
STKHSKAAAEFLKNKKQAAWHDETLWLVRAKRDRLSKEVPEWEELRNMACATKLYSNSH
CCCHHHHHHHHHHCCCCCCCCCCEEEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
LDELLVEFENNARANGAHVYWAKDADEYCNIVYNILNQHGVKHFIKSKSMLAEECELNPF
HHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
LESKGIEVVESDLGERILQLMHLKPSHIVLPAIHIKREQVGELFEREMGTEKGNFDPTYL
HHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
THAARKNLRQKFIHAEAAMTGANFAVASTGEIVVCTNEGNADMGTSQPKLQIAAFGMEKI
HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECCCCCCCCCCCCCEEEEEECHHHH
VPDRESLGVFTRLLARSATGQPITTYTSHYRKPREGGELHIIIVDNGRSKILADPKHIKT
CCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCEEEEEEECCCCCEECCHHHHCH
LNCIRCGACMNTCPVYRRSGGYSYTYFIPGPIGINLGMLKAPLHYYDNVSACSLCYSCSF
HHHHHHHHHHHCCCHHCCCCCCEEEEEECCCCCCCCHHHHCCHHHHCCHHHHHHHHHCCC
VCPAKVDLAEQIYLWRQDLDKLGKADRMKKVMSGGMEFMMKRPSIFNMALKWAPLVNGVP
CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCCC
RFLIYNGLNDWGKGREMPKFAKESFNEMWKKGKVK
CEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]