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The map label for this gene is gcdB [H]

Identifier: 150005023

GI number: 150005023

Start: 3190080

End: 3191240

Strand: Reverse

Name: gcdB [H]

Synonym: BVU_2488

Alternate gene names: 150005023

Gene position: 3191240-3190080 (Counterclockwise)

Preceding gene: 150005024

Following gene: 150005022

Centisome position: 61.81

GC content: 45.05

Gene sequence:

>1161_bases
ATGGGAGAATTTATCAACTTTTTAGGGAATAACCTAGCTGACTTTTGGACATATACGGGTTTTGCCAATGCTACTGTTGG
TCATATCGTAATGATCCTGATAGGTTTATTCTTCATATACCTTGCCGTGGCCAAGGAATTTGAGCCGATGTTGCTCATTC
CTATCGGTTTCGGTATCTTGATCGGTAATATTCCTTTCAACATGGAAGCCGGACTGAAAGTCGGCATCTATGAGGAAGGT
TCTGTTCTTAATATTTTATATCAAGGAGTTACCTCCGGATGGTATCCACCACTTATCTTTTTAGGTATCGGTGCAATGAC
GGATTTCTCGGCATTGATTTCAAATCCTAAACTGATGTTGATTGGTGCTGCCGCACAGTTTGGTATTTTCGGTGCATACA
TGATTGCATTGGCAATGGGCTTTGATCCGATGCAGGCTGGTGCTATCGGCATCATCGGTGGTGCGGACGGTCCGACAGCA
ATCTTCCTTTCATCCAAACTGGCGCCTAACCTGATGGGAGCTATTGCGGTATCTGCCTATTCATACATGGCATTGGTACC
GGTTATCCAGCCGCCTATCATGCGTCTGCTCACTACCAAGCACGAACGTTTGATCCGTATGAAACCACCACGCGTCGTTT
CTCATACAGAAAAAGTAATGTTCCCTATCATTGGTTTGTTGCTTACTTGTTTTCTGGTTCCGTCGGGTCTGCCTCTATTG
GGTATGCTTTTCTTTGGTAACTTATTGAAAGAAAGCGGTGTAACCCGTCGCTTGGCAGAAACTGCCCGCGGTCCGCTGAT
TGATACCATTACCATCTTATTAGGATTGACAGTAGGTGCTTCCACGCAAGCTTCAGAATTCCTTACCATTGATTCGATTT
TGATTTTCGCGCTGGGTGCATTGTCATTCATCATTGCTACCGCTTCGGGAGTTATCTTCGTAAAGATATTCAACTTGGTA
TTAGGTAAGGATAACAAAATCAATCCGCTTATCGGTAATGCCGGTGTATCTGCTGTTCCTGACTCGGCACGTATCTCTCA
GGTTATCGGTCTGGAATATGATCCTACCAACTACTTGCTGATGCATGCCATGGGTCCCAACGTAGCCGGTGTAATCGGTT
CTGCCGTAGCTGCCGGTATTTTACTTGGGTTCTTGATGTAA

Upstream 100 bases:

>100_bases
AATAACATCAATGCAGACAAAGACGGCAAGATCACCGCAATCAATGTAAGTAAAGGAGAATCCGTTCTCGAAGGTACTGA
CCTTGTAATTATTGAATAAT

Downstream 100 bases:

>100_bases
TTCATTGAACAACAATAAATAAAATCCTCTTCAACTAATATGTGGAAGAGGATTTTTTATTGATATAGATTAAGAAATGA
ATGATTTATTATGATTTTTG

Product: oxaloacetate decarboxylase beta chain

Products: NA

Alternate protein names: Carboxylyase [H]

Number of amino acids: Translated: 386; Mature: 385

Protein sequence:

>386_residues
MGEFINFLGNNLADFWTYTGFANATVGHIVMILIGLFFIYLAVAKEFEPMLLIPIGFGILIGNIPFNMEAGLKVGIYEEG
SVLNILYQGVTSGWYPPLIFLGIGAMTDFSALISNPKLMLIGAAAQFGIFGAYMIALAMGFDPMQAGAIGIIGGADGPTA
IFLSSKLAPNLMGAIAVSAYSYMALVPVIQPPIMRLLTTKHERLIRMKPPRVVSHTEKVMFPIIGLLLTCFLVPSGLPLL
GMLFFGNLLKESGVTRRLAETARGPLIDTITILLGLTVGASTQASEFLTIDSILIFALGALSFIIATASGVIFVKIFNLV
LGKDNKINPLIGNAGVSAVPDSARISQVIGLEYDPTNYLLMHAMGPNVAGVIGSAVAAGILLGFLM

Sequences:

>Translated_386_residues
MGEFINFLGNNLADFWTYTGFANATVGHIVMILIGLFFIYLAVAKEFEPMLLIPIGFGILIGNIPFNMEAGLKVGIYEEG
SVLNILYQGVTSGWYPPLIFLGIGAMTDFSALISNPKLMLIGAAAQFGIFGAYMIALAMGFDPMQAGAIGIIGGADGPTA
IFLSSKLAPNLMGAIAVSAYSYMALVPVIQPPIMRLLTTKHERLIRMKPPRVVSHTEKVMFPIIGLLLTCFLVPSGLPLL
GMLFFGNLLKESGVTRRLAETARGPLIDTITILLGLTVGASTQASEFLTIDSILIFALGALSFIIATASGVIFVKIFNLV
LGKDNKINPLIGNAGVSAVPDSARISQVIGLEYDPTNYLLMHAMGPNVAGVIGSAVAAGILLGFLM
>Mature_385_residues
GEFINFLGNNLADFWTYTGFANATVGHIVMILIGLFFIYLAVAKEFEPMLLIPIGFGILIGNIPFNMEAGLKVGIYEEGS
VLNILYQGVTSGWYPPLIFLGIGAMTDFSALISNPKLMLIGAAAQFGIFGAYMIALAMGFDPMQAGAIGIIGGADGPTAI
FLSSKLAPNLMGAIAVSAYSYMALVPVIQPPIMRLLTTKHERLIRMKPPRVVSHTEKVMFPIIGLLLTCFLVPSGLPLLG
MLFFGNLLKESGVTRRLAETARGPLIDTITILLGLTVGASTQASEFLTIDSILIFALGALSFIIATASGVIFVKIFNLVL
GKDNKINPLIGNAGVSAVPDSARISQVIGLEYDPTNYLLMHAMGPNVAGVIGSAVAAGILLGFLM

Specific function: Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD) [H]

COG id: COG1883

COG function: function code C; Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gcdB/mmdB/oadB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005661 [H]

Pfam domain/function: PF03977 OAD_beta [H]

EC number: =4.1.1.70 [H]

Molecular weight: Translated: 40879; Mature: 40747

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGEFINFLGNNLADFWTYTGFANATVGHIVMILIGLFFIYLAVAKEFEPMLLIPIGFGIL
CCHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEE
IGNIPFNMEAGLKVGIYEEGSVLNILYQGVTSGWYPPLIFLGIGAMTDFSALISNPKLML
ECCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE
IGAAAQFGIFGAYMIALAMGFDPMQAGAIGIIGGADGPTAIFLSSKLAPNLMGAIAVSAY
EECHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHH
SYMALVPVIQPPIMRLLTTKHERLIRMKPPRVVSHTEKVMFPIIGLLLTCFLVPSGLPLL
HHHHHHHHHCHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
GMLFFGNLLKESGVTRRLAETARGPLIDTITILLGLTVGASTQASEFLTIDSILIFALGA
HHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
LSFIIATASGVIFVKIFNLVLGKDNKINPLIGNAGVSAVPDSARISQVIGLEYDPTNYLL
HHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHHHHCCEECCCCEEE
MHAMGPNVAGVIGSAVAAGILLGFLM
EEECCCCHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
GEFINFLGNNLADFWTYTGFANATVGHIVMILIGLFFIYLAVAKEFEPMLLIPIGFGIL
CHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEE
IGNIPFNMEAGLKVGIYEEGSVLNILYQGVTSGWYPPLIFLGIGAMTDFSALISNPKLML
ECCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE
IGAAAQFGIFGAYMIALAMGFDPMQAGAIGIIGGADGPTAIFLSSKLAPNLMGAIAVSAY
EECHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHH
SYMALVPVIQPPIMRLLTTKHERLIRMKPPRVVSHTEKVMFPIIGLLLTCFLVPSGLPLL
HHHHHHHHHCHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
GMLFFGNLLKESGVTRRLAETARGPLIDTITILLGLTVGASTQASEFLTIDSILIFALGA
HHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
LSFIIATASGVIFVKIFNLVLGKDNKINPLIGNAGVSAVPDSARISQVIGLEYDPTNYLL
HHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHHHHCCEECCCCEEE
MHAMGPNVAGVIGSAVAAGILLGFLM
EEECCCCHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10027965 [H]