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The map label for this gene is ybdB [C]

Identifier: 150004957

GI number: 150004957

Start: 3106363

End: 3106770

Strand: Reverse

Name: ybdB [C]

Synonym: BVU_2420

Alternate gene names: 150004957

Gene position: 3106770-3106363 (Counterclockwise)

Preceding gene: 150004958

Following gene: 150004956

Centisome position: 60.17

GC content: 50.25

Gene sequence:

>408_bases
ATGATGGAAGAAACAACCTGCAAACCTGATTATTCGAATTCGATGGCGGAACATCTGGGTATCCGGTTTCTACCCTCCAC
CGAGGATGCGGTACATGCCGAAATGCCTGTAGACCATCGTACTTCACAACCCTTTGGTATGTTGAACGGCGGCGCGTCAC
TGGCTCTGGCCGAGATTGTGGCAGGGCATGGCTCTACGTCGCTATGCCGGGAAGACGAATATGCCTGCGGAGTACAAGTA
AGTGGAAATCATCTGTCGGCCGTGCCCGTCGGAGGCAAAGTATTCGCCACCGGCAAACTGATTCACCGCGGCAGATCCTC
GCATATATGGAATATAGATATCACCACTCCACAAGGACAACTGGTTTCTACTGTTCGTGTCGTTAATTTCATACTGAAAA
AGAAATGA

Upstream 100 bases:

>100_bases
TTTAAATAAATGTTTTTGTTAGTAAAAGACATACATACAACACCTTTTCATCTAAAATTTATGTATTTTTGTAGCCCTAT
AGAAAAGAACAGACATACAA

Downstream 100 bases:

>100_bases
ATCTACCAGATATACATACGCAAAAATTATTGGATTGCCTGACACACAGCCGCCTCGGTTTCGCCCTCTACCGGTTACCT
TGGACAGACGAATGCTACCT

Product: haloacid dehalogenase-like hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MMEETTCKPDYSNSMAEHLGIRFLPSTEDAVHAEMPVDHRTSQPFGMLNGGASLALAEIVAGHGSTSLCREDEYACGVQV
SGNHLSAVPVGGKVFATGKLIHRGRSSHIWNIDITTPQGQLVSTVRVVNFILKKK

Sequences:

>Translated_135_residues
MMEETTCKPDYSNSMAEHLGIRFLPSTEDAVHAEMPVDHRTSQPFGMLNGGASLALAEIVAGHGSTSLCREDEYACGVQV
SGNHLSAVPVGGKVFATGKLIHRGRSSHIWNIDITTPQGQLVSTVRVVNFILKKK
>Mature_135_residues
MMEETTCKPDYSNSMAEHLGIRFLPSTEDAVHAEMPVDHRTSQPFGMLNGGASLALAEIVAGHGSTSLCREDEYACGVQV
SGNHLSAVPVGGKVFATGKLIHRGRSSHIWNIDITTPQGQLVSTVRVVNFILKKK

Specific function: Unknown

COG id: COG2050

COG function: function code Q; Uncharacterized protein, possibly involved in aromatic compounds catabolism

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the thioesterase PaaI family [H]

Homologues:

Organism=Escherichia coli, GI1786813, Length=121, Percent_Identity=37.1900826446281, Blast_Score=81, Evalue=2e-17,
Organism=Escherichia coli, GI1787976, Length=120, Percent_Identity=38.3333333333333, Blast_Score=78, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003736
- InterPro:   IPR006683 [H]

Pfam domain/function: PF03061 4HBT [H]

EC number: NA

Molecular weight: Translated: 14546; Mature: 14546

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMEETTCKPDYSNSMAEHLGIRFLPSTEDAVHAEMPVDHRTSQPFGMLNGGASLALAEIV
CCCCCCCCCCCCCHHHHHCCEEECCCCCCCEEECCCCCCCCCCCCEEECCCCHHHHHHHH
AGHGSTSLCREDEYACGVQVSGNHLSAVPVGGKVFATGKLIHRGRSSHIWNIDITTPQGQ
HCCCCCCCCCCCCCEEEEEECCCEEEEECCCCEEEEECHHHCCCCCCEEEEEEEECCCCH
LVSTVRVVNFILKKK
HHHHHHHHHHHHCCC
>Mature Secondary Structure
MMEETTCKPDYSNSMAEHLGIRFLPSTEDAVHAEMPVDHRTSQPFGMLNGGASLALAEIV
CCCCCCCCCCCCCHHHHHCCEEECCCCCCCEEECCCCCCCCCCCCEEECCCCHHHHHHHH
AGHGSTSLCREDEYACGVQVSGNHLSAVPVGGKVFATGKLIHRGRSSHIWNIDITTPQGQ
HCCCCCCCCCCCCCEEEEEECCCEEEEECCCCEEEEECHHHCCCCCCEEEEEEEECCCCH
LVSTVRVVNFILKKK
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]