Click here to switch to the map view.

The map label for this gene is ykpA [H]

Identifier: 150004868

GI number: 150004868

Start: 3008311

End: 3009930

Strand: Direct

Name: ykpA [H]

Synonym: BVU_2331

Alternate gene names: 150004868

Gene position: 3008311-3009930 (Clockwise)

Preceding gene: 150004842

Following gene: 150004869

Centisome position: 58.26

GC content: 42.1

Gene sequence:

>1620_bases
ATGATTACAGTTTCGAACTTGGCCATTCAATTTGGTAAAAGAGTGTTGTATAATGACGTAAATATGAAGTTCACCAATGG
TAATATTTACGGGGTTATCGGTGCGAACGGCGCCGGAAAATCTACTTTCTTGAAAGCAATTTCAGGTGAGCTGGAACCGA
CTAAGGGCTCAGTGGTATTAGGACCGGGCGAACGTCTGTCTGTATTGAGCCAGGATCACTTTAAGTGGGATGAATATACA
GTCATGGATACGGTTATGATGGGACATACTGTGTTGTGGAACATTATGAAACAGCGTGAAGAACTGTATGCGAAAACTGA
TTTTACAGATGAAGATGGCTTGAAAGTTTCTGAATTGGAAGAGAAGTTTGCCGAACTGGATGGTTGGAATGCCGAGAGTG
ATGCTGCTTCTTTGTTGAGCGGATTGGGCATAAAGGAAGACAAGCACTATATGTTGATGGGGGAACTGAGCGGTAAGGAA
AAGGTGCGTGTCATGTTGGCGCAGGCACTTTACGGTAATCCTGATAACTTGTTGTTGGATGAACCTACCAATGATTTGGA
TATGGATACGGTGACTTGGTTGGAGGAATATCTTTCTAATTTCGAGCACACGGTGTTGGTGGTAAGTCATGACCGTCACT
TTTTGGACTCTGTTTGTACTCATACTGTAGATATTGATTTCGGTAAAGTGAATATGTTTGCCGGTAACTATAGCTTCTGG
TATGAATCAAGTCAGTTGGCACTTCGCCAGCAGCAGAACCAGAAGGCTAAAGCTGAAGAGAAGAAGAAAGAGTTGGAAGA
ATTTATCCGTCGTTTTAGTGCCAATGTGGCTAAGAGCAAGCAGACAACCAGCCGAAAGAAGATGTTGGAAAAACTGAATG
TAGATGAAATTAAGCCGTCGTCCCGTAAATATCCCGGTATCATCTTTACTCCGGATCGTGAACCGGGCAATCAGATTTTG
GAAGTATCCGGCTTGCGTGCGGAAACTGAAGACGGTATGGTATTGTTCAATGATGTGAATTTTAATGTAGAAAAAGGAGA
TAAGATTGTCTTTTTGAGCCGTGATCCGCGTGCCATGACTGCTTTTTTTGAAATAATCAATGGAAATCGTACTCCGCAGG
CTGGTAAATTCGCGTGGGGCGTTACTATTACTACGGCTTATTTGCCTTTGGATAATACGGATTTCTTTGAAAGTGATTTG
AATTTGGTAGATTGGCTGAGCCAGTTTGGCGAAGGTAACGAAGTCTATATGAAAGGTTTCTTGGGGCGTATGTTGTTTTC
CGGAGAGGAAGTATTGAAGAAAGTGAATGTGCTTTCCGGAGGTGAGAAGATGCGTTGTATGATTGCCCGTATGCAGTTGC
GTAATGCGAACTGTCTGATTTTGGATACTCCAACCAACCATTTGGACTTGGAATCAATTCAGGCTTTCAATAATAATCTG
AAGACTTATAAGGGAAATGTGCTGTTCTCTTCCCACGACCACGAATTTATTGAAACGGTGGCGAACCGTATTATTGAATT
GACCCCGAATGGTATCATTGACAAGATGATGGAATACGATGAATACATCACTTCTGATCATATTAAAGAAATGCGTGCGC
GTATGTATGGAGATAATTAA

Upstream 100 bases:

>100_bases
AAAGTACGGAATTTCTGCCACACTGGCATACTTTTCTGAATTAAAATGCCTACCTTTGCAATTCCAAAATAGAATAATTA
TATAAATAAGGTATATTAGG

Downstream 100 bases:

>100_bases
ATTATAAATATGAGCTGAAAAAGAAAGAGTCATTGGGAGCCATTGTTCCTGTGGCTCTTTTTTTATGGTTTAGCCGCAAT
TCTCATTCTGTATGAACCAT

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 539; Mature: 539

Protein sequence:

>539_residues
MITVSNLAIQFGKRVLYNDVNMKFTNGNIYGVIGANGAGKSTFLKAISGELEPTKGSVVLGPGERLSVLSQDHFKWDEYT
VMDTVMMGHTVLWNIMKQREELYAKTDFTDEDGLKVSELEEKFAELDGWNAESDAASLLSGLGIKEDKHYMLMGELSGKE
KVRVMLAQALYGNPDNLLLDEPTNDLDMDTVTWLEEYLSNFEHTVLVVSHDRHFLDSVCTHTVDIDFGKVNMFAGNYSFW
YESSQLALRQQQNQKAKAEEKKKELEEFIRRFSANVAKSKQTTSRKKMLEKLNVDEIKPSSRKYPGIIFTPDREPGNQIL
EVSGLRAETEDGMVLFNDVNFNVEKGDKIVFLSRDPRAMTAFFEIINGNRTPQAGKFAWGVTITTAYLPLDNTDFFESDL
NLVDWLSQFGEGNEVYMKGFLGRMLFSGEEVLKKVNVLSGGEKMRCMIARMQLRNANCLILDTPTNHLDLESIQAFNNNL
KTYKGNVLFSSHDHEFIETVANRIIELTPNGIIDKMMEYDEYITSDHIKEMRARMYGDN

Sequences:

>Translated_539_residues
MITVSNLAIQFGKRVLYNDVNMKFTNGNIYGVIGANGAGKSTFLKAISGELEPTKGSVVLGPGERLSVLSQDHFKWDEYT
VMDTVMMGHTVLWNIMKQREELYAKTDFTDEDGLKVSELEEKFAELDGWNAESDAASLLSGLGIKEDKHYMLMGELSGKE
KVRVMLAQALYGNPDNLLLDEPTNDLDMDTVTWLEEYLSNFEHTVLVVSHDRHFLDSVCTHTVDIDFGKVNMFAGNYSFW
YESSQLALRQQQNQKAKAEEKKKELEEFIRRFSANVAKSKQTTSRKKMLEKLNVDEIKPSSRKYPGIIFTPDREPGNQIL
EVSGLRAETEDGMVLFNDVNFNVEKGDKIVFLSRDPRAMTAFFEIINGNRTPQAGKFAWGVTITTAYLPLDNTDFFESDL
NLVDWLSQFGEGNEVYMKGFLGRMLFSGEEVLKKVNVLSGGEKMRCMIARMQLRNANCLILDTPTNHLDLESIQAFNNNL
KTYKGNVLFSSHDHEFIETVANRIIELTPNGIIDKMMEYDEYITSDHIKEMRARMYGDN
>Mature_539_residues
MITVSNLAIQFGKRVLYNDVNMKFTNGNIYGVIGANGAGKSTFLKAISGELEPTKGSVVLGPGERLSVLSQDHFKWDEYT
VMDTVMMGHTVLWNIMKQREELYAKTDFTDEDGLKVSELEEKFAELDGWNAESDAASLLSGLGIKEDKHYMLMGELSGKE
KVRVMLAQALYGNPDNLLLDEPTNDLDMDTVTWLEEYLSNFEHTVLVVSHDRHFLDSVCTHTVDIDFGKVNMFAGNYSFW
YESSQLALRQQQNQKAKAEEKKKELEEFIRRFSANVAKSKQTTSRKKMLEKLNVDEIKPSSRKYPGIIFTPDREPGNQIL
EVSGLRAETEDGMVLFNDVNFNVEKGDKIVFLSRDPRAMTAFFEIINGNRTPQAGKFAWGVTITTAYLPLDNTDFFESDL
NLVDWLSQFGEGNEVYMKGFLGRMLFSGEEVLKKVNVLSGGEKMRCMIARMQLRNANCLILDTPTNHLDLESIQAFNNNL
KTYKGNVLFSSHDHEFIETVANRIIELTPNGIIDKMMEYDEYITSDHIKEMRARMYGDN

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=527, Percent_Identity=28.6527514231499, Blast_Score=236, Evalue=4e-62,
Organism=Homo sapiens, GI27881506, Length=541, Percent_Identity=27.5415896487985, Blast_Score=198, Evalue=1e-50,
Organism=Homo sapiens, GI10947137, Length=541, Percent_Identity=27.5415896487985, Blast_Score=197, Evalue=2e-50,
Organism=Homo sapiens, GI10947135, Length=506, Percent_Identity=24.901185770751, Blast_Score=152, Evalue=9e-37,
Organism=Homo sapiens, GI69354671, Length=506, Percent_Identity=24.901185770751, Blast_Score=152, Evalue=1e-36,
Organism=Escherichia coli, GI1787041, Length=531, Percent_Identity=42.1845574387947, Blast_Score=469, Evalue=1e-133,
Organism=Escherichia coli, GI1789751, Length=506, Percent_Identity=30.0395256916996, Blast_Score=240, Evalue=2e-64,
Organism=Escherichia coli, GI2367384, Length=525, Percent_Identity=30.0952380952381, Blast_Score=231, Evalue=1e-61,
Organism=Escherichia coli, GI1787182, Length=521, Percent_Identity=26.8714011516315, Blast_Score=184, Evalue=1e-47,
Organism=Escherichia coli, GI1786398, Length=243, Percent_Identity=31.2757201646091, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1787029, Length=233, Percent_Identity=26.6094420600858, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1788644, Length=243, Percent_Identity=27.5720164609054, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1789864, Length=227, Percent_Identity=25.1101321585903, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=518, Percent_Identity=32.6254826254826, Blast_Score=230, Evalue=1e-60,
Organism=Caenorhabditis elegans, GI17555318, Length=543, Percent_Identity=25.9668508287293, Blast_Score=195, Evalue=6e-50,
Organism=Caenorhabditis elegans, GI17559834, Length=514, Percent_Identity=26.4591439688716, Blast_Score=169, Evalue=4e-42,
Organism=Saccharomyces cerevisiae, GI6320874, Length=517, Percent_Identity=29.5938104448743, Blast_Score=213, Evalue=4e-56,
Organism=Saccharomyces cerevisiae, GI6321121, Length=555, Percent_Identity=29.5495495495495, Blast_Score=213, Evalue=7e-56,
Organism=Saccharomyces cerevisiae, GI6325030, Length=247, Percent_Identity=34.412955465587, Blast_Score=112, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6323278, Length=418, Percent_Identity=24.4019138755981, Blast_Score=94, Evalue=4e-20,
Organism=Saccharomyces cerevisiae, GI6324314, Length=241, Percent_Identity=28.6307053941909, Blast_Score=91, Evalue=6e-19,
Organism=Drosophila melanogaster, GI24666836, Length=512, Percent_Identity=30.2734375, Blast_Score=242, Evalue=4e-64,
Organism=Drosophila melanogaster, GI24641342, Length=537, Percent_Identity=27.3743016759777, Blast_Score=186, Evalue=4e-47,
Organism=Drosophila melanogaster, GI24642252, Length=545, Percent_Identity=24.4036697247706, Blast_Score=176, Evalue=3e-44,
Organism=Drosophila melanogaster, GI18859989, Length=545, Percent_Identity=24.4036697247706, Blast_Score=176, Evalue=3e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 61286; Mature: 61286

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITVSNLAIQFGKRVLYNDVNMKFTNGNIYGVIGANGAGKSTFLKAISGELEPTKGSVVL
CEEEHHHHHHHCCHHEEECCEEEEECCEEEEEEECCCCCHHHHHHHHCCCCCCCCCCEEE
GPGERLSVLSQDHFKWDEYTVMDTVMMGHTVLWNIMKQREELYAKTDFTDEDGLKVSELE
CCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
EKFAELDGWNAESDAASLLSGLGIKEDKHYMLMGELSGKEKVRVMLAQALYGNPDNLLLD
HHHHHCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEE
EPTNDLDMDTVTWLEEYLSNFEHTVLVVSHDRHFLDSVCTHTVDIDFGKVNMFAGNYSFW
CCCCCCCCHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHEEEECCCEEEEEECCEEEE
YESSQLALRQQQNQKAKAEEKKKELEEFIRRFSANVAKSKQTTSRKKMLEKLNVDEIKPS
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
SRKYPGIIFTPDREPGNQILEVSGLRAETEDGMVLFNDVNFNVEKGDKIVFLSRDPRAMT
CCCCCCEEECCCCCCCCCEEEECCCEECCCCCEEEEEECEEEEECCCEEEEEECCCHHHH
AFFEIINGNRTPQAGKFAWGVTITTAYLPLDNTDFFESDLNLVDWLSQFGEGNEVYMKGF
HHHHHHCCCCCCCCCCEEEEEEEEEEEEECCCCCHHHHCCHHHHHHHHHCCCCEEHHHHH
LGRMLFSGEEVLKKVNVLSGGEKMRCMIARMQLRNANCLILDTPTNHLDLESIQAFNNNL
HHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCC
KTYKGNVLFSSHDHEFIETVANRIIELTPNGIIDKMMEYDEYITSDHIKEMRARMYGDN
CEEECCEEEECCCHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MITVSNLAIQFGKRVLYNDVNMKFTNGNIYGVIGANGAGKSTFLKAISGELEPTKGSVVL
CEEEHHHHHHHCCHHEEECCEEEEECCEEEEEEECCCCCHHHHHHHHCCCCCCCCCCEEE
GPGERLSVLSQDHFKWDEYTVMDTVMMGHTVLWNIMKQREELYAKTDFTDEDGLKVSELE
CCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
EKFAELDGWNAESDAASLLSGLGIKEDKHYMLMGELSGKEKVRVMLAQALYGNPDNLLLD
HHHHHCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEE
EPTNDLDMDTVTWLEEYLSNFEHTVLVVSHDRHFLDSVCTHTVDIDFGKVNMFAGNYSFW
CCCCCCCCHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHEEEECCCEEEEEECCEEEE
YESSQLALRQQQNQKAKAEEKKKELEEFIRRFSANVAKSKQTTSRKKMLEKLNVDEIKPS
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
SRKYPGIIFTPDREPGNQILEVSGLRAETEDGMVLFNDVNFNVEKGDKIVFLSRDPRAMT
CCCCCCEEECCCCCCCCCEEEECCCEECCCCCEEEEEECEEEEECCCEEEEEECCCHHHH
AFFEIINGNRTPQAGKFAWGVTITTAYLPLDNTDFFESDLNLVDWLSQFGEGNEVYMKGF
HHHHHHCCCCCCCCCCEEEEEEEEEEEEECCCCCHHHHCCHHHHHHHHHCCCCEEHHHHH
LGRMLFSGEEVLKKVNVLSGGEKMRCMIARMQLRNANCLILDTPTNHLDLESIQAFNNNL
HHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCC
KTYKGNVLFSSHDHEFIETVANRIIELTPNGIIDKMMEYDEYITSDHIKEMRARMYGDN
CEEECCEEEECCCHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]