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The map label for this gene is yagH [H]

Identifier: 150004707

GI number: 150004707

Start: 2798727

End: 2800604

Strand: Direct

Name: yagH [H]

Synonym: BVU_2168

Alternate gene names: 150004707

Gene position: 2798727-2800604 (Clockwise)

Preceding gene: 150004706

Following gene: 150004708

Centisome position: 54.21

GC content: 46.43

Gene sequence:

>1878_bases
ATGAGATTGATGATAAGAAATTTTTTTATTGCAATATGTTCTATAATTTTCTGTCCTTATAATCTGCAAGGACAAAATGG
TGTTTCTTTAGAAACTAAATTAGTACATAAACTGACCTTAGTGGCAGATTCACTAACCAAGCATCTGAAACCTTGGACAG
TCCCCGTTTCTATATTCGATGTACGGAAGTATGGAGCAATAGGTGATGGGAGTACGCTGAACACCACTGCTATACAGAAG
GCAATCGACGCTTGCTTTGTCGCAGGTGGAGGAACCGTACGGATAGCAGGAGGAGAATACGTGACGGGCACTATAGAATT
GAAATCCGGTGTGATGCTGGAGGTAGCCAAAGGTGCTCGCTTACTGGGTAGCACGAATTTGAAAGATTATCCAGACAAGG
TGGAACGCTTTCAAAGTGTGATGAACGTGATACACAAATACCGCATTTCGCTGATTTATGCCGAACGGGCGGAACGTGTG
GGCATTTGCGGGGAGGGTGAGATATACTTTCGCGGCGAAGCAAAGAATTTTCCGGGACCAGAGACCATCGGAGCATTGGA
AGGACGTCCTTTCGGCATCCGCATGATAGAGTGCAACAACGTGGTCCTGAAAGGAATCACCCTGCGCAACTCTGCCGCAT
GGATGCAAAGTTATATTTATTGTCGCGACTTAATATTCGATGGCATTACCGTGTTTAACCATGCCAATCACAACAATGAC
GCACTTGACCCGGACGGGTGTAAGAATGTCATTGTAAGAAACTGTTTTTTCAGTTCGCACGATGATGCCATGTGTCTGAA
AAGTGCCAGTGCCAAACCTTGCGAAAACATACTGATAGAAAACTCTACCTTCTACTCCACCTGCAATGCTTTTAAACTGG
GTACAGATACTCAAGGCGATTACCGTAACATCATCGCTCGCAAGTTGGTGCTGGGTGGCCTTCCGGATGCTTCCCAGTCT
TTTCGTAACCGCGATGACTGCAGTACCGGTATCACATTGGCTACCGTGGACGGAGGAAACATCGAGAACATCTTGATACA
AGATATAGAGATAAACCGTAGCCGTTGCCCCATCTTTCTTCGTATCGGTAATCGCGGACGCCGGCTCAACGAGAAGATGG
AGCATCCCGGATATTTGAAGAACGTGGTAATCAAGAACATCAAAGGTACGGACAACCGTCTGCAAGGCTCGCTGATTTCG
GGTATCAAGGAATATCCGGTAGAAAACGTTGTCATTCGCAACATGGATATTGAAACTGTGGGTGGCGGCACTCAAAAGAT
GGCAACATTGGAAGTGCCGGAATTGGAAGGTGGTTATCCCGATGCACAGGATTTCCGTCGGAACGGTTTGCCAGCATTCG
GTTTTTATGTGCGCCATGCACAGAATATCTATTTCAAAAACATCCACATTACGCCGAAGAAGGCCGAGGAACGTCCTTTG
TTCCGTGTGGGCAAAGATGTAGAGAATCTCTGGGTGGACAGCAAGGAGATGGCGGATGTGAAATATACTTTCAGGAATCC
CATTCTTGGCGGTGATTATCCGGATCCTACTATCATCAGAAGTGGAGAAGATTACTATATGACACACTCCGCCTTTAACT
ATCTCCCCGGACTGACTATATTCCACTCACGCGACCTTGTAAACTGGCAACCTGTTAGTGTAGCGTTGACCCGTTATTTG
GGTTCTGTATGGGCGCCGGACATCTGTAAGTATCAGGGAAAGTATTACATTTATTTCACTGTGTCACAGGGTAATGATCG
CTTCAGCAATCATGTGGTTTATGCCGATTCACCTGAGGGGCCTTGGAGTGAACCGGTGGACTTGAAGATTGGGTACTGGA
TAGACCCTTGTCATGTAGTGGATGAGAGTACTGGCTAG

Upstream 100 bases:

>100_bases
GATACCGGAAGCTATATTTTCTATTCCTAGTGATAAATGGGGAGAAACTGAAAGTTTTGTCGGGAAAGATAATCAGTAAG
GGTACAACAAATGTGTTATT

Downstream 100 bases:

>100_bases
CGGTGGTTGTTTCTTAGCGGTGGGCATCGGGTGAAATTGACGGATGACGGGCTGTCTGTAGCTGGAAAGTTGGAGAAAGT
GTATGATGGCTGGCCTATCC

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase [H]

Number of amino acids: Translated: 625; Mature: 625

Protein sequence:

>625_residues
MRLMIRNFFIAICSIIFCPYNLQGQNGVSLETKLVHKLTLVADSLTKHLKPWTVPVSIFDVRKYGAIGDGSTLNTTAIQK
AIDACFVAGGGTVRIAGGEYVTGTIELKSGVMLEVAKGARLLGSTNLKDYPDKVERFQSVMNVIHKYRISLIYAERAERV
GICGEGEIYFRGEAKNFPGPETIGALEGRPFGIRMIECNNVVLKGITLRNSAAWMQSYIYCRDLIFDGITVFNHANHNND
ALDPDGCKNVIVRNCFFSSHDDAMCLKSASAKPCENILIENSTFYSTCNAFKLGTDTQGDYRNIIARKLVLGGLPDASQS
FRNRDDCSTGITLATVDGGNIENILIQDIEINRSRCPIFLRIGNRGRRLNEKMEHPGYLKNVVIKNIKGTDNRLQGSLIS
GIKEYPVENVVIRNMDIETVGGGTQKMATLEVPELEGGYPDAQDFRRNGLPAFGFYVRHAQNIYFKNIHITPKKAEERPL
FRVGKDVENLWVDSKEMADVKYTFRNPILGGDYPDPTIIRSGEDYYMTHSAFNYLPGLTIFHSRDLVNWQPVSVALTRYL
GSVWAPDICKYQGKYYIYFTVSQGNDRFSNHVVYADSPEGPWSEPVDLKIGYWIDPCHVVDESTG

Sequences:

>Translated_625_residues
MRLMIRNFFIAICSIIFCPYNLQGQNGVSLETKLVHKLTLVADSLTKHLKPWTVPVSIFDVRKYGAIGDGSTLNTTAIQK
AIDACFVAGGGTVRIAGGEYVTGTIELKSGVMLEVAKGARLLGSTNLKDYPDKVERFQSVMNVIHKYRISLIYAERAERV
GICGEGEIYFRGEAKNFPGPETIGALEGRPFGIRMIECNNVVLKGITLRNSAAWMQSYIYCRDLIFDGITVFNHANHNND
ALDPDGCKNVIVRNCFFSSHDDAMCLKSASAKPCENILIENSTFYSTCNAFKLGTDTQGDYRNIIARKLVLGGLPDASQS
FRNRDDCSTGITLATVDGGNIENILIQDIEINRSRCPIFLRIGNRGRRLNEKMEHPGYLKNVVIKNIKGTDNRLQGSLIS
GIKEYPVENVVIRNMDIETVGGGTQKMATLEVPELEGGYPDAQDFRRNGLPAFGFYVRHAQNIYFKNIHITPKKAEERPL
FRVGKDVENLWVDSKEMADVKYTFRNPILGGDYPDPTIIRSGEDYYMTHSAFNYLPGLTIFHSRDLVNWQPVSVALTRYL
GSVWAPDICKYQGKYYIYFTVSQGNDRFSNHVVYADSPEGPWSEPVDLKIGYWIDPCHVVDESTG
>Mature_625_residues
MRLMIRNFFIAICSIIFCPYNLQGQNGVSLETKLVHKLTLVADSLTKHLKPWTVPVSIFDVRKYGAIGDGSTLNTTAIQK
AIDACFVAGGGTVRIAGGEYVTGTIELKSGVMLEVAKGARLLGSTNLKDYPDKVERFQSVMNVIHKYRISLIYAERAERV
GICGEGEIYFRGEAKNFPGPETIGALEGRPFGIRMIECNNVVLKGITLRNSAAWMQSYIYCRDLIFDGITVFNHANHNND
ALDPDGCKNVIVRNCFFSSHDDAMCLKSASAKPCENILIENSTFYSTCNAFKLGTDTQGDYRNIIARKLVLGGLPDASQS
FRNRDDCSTGITLATVDGGNIENILIQDIEINRSRCPIFLRIGNRGRRLNEKMEHPGYLKNVVIKNIKGTDNRLQGSLIS
GIKEYPVENVVIRNMDIETVGGGTQKMATLEVPELEGGYPDAQDFRRNGLPAFGFYVRHAQNIYFKNIHITPKKAEERPL
FRVGKDVENLWVDSKEMADVKYTFRNPILGGDYPDPTIIRSGEDYYMTHSAFNYLPGLTIFHSRDLVNWQPVSVALTRYL
GSVWAPDICKYQGKYYIYFTVSQGNDRFSNHVVYADSPEGPWSEPVDLKIGYWIDPCHVVDESTG

Specific function: Unknown

COG id: COG5434

COG function: function code M; Endopolygalacturonase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=120, Percent_Identity=41.6666666666667, Blast_Score=89, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR009784
- InterPro:   IPR006710 [H]

Pfam domain/function: PF07081 DUF1349; PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.37 [H]

Molecular weight: Translated: 69934; Mature: 69934

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLMIRNFFIAICSIIFCPYNLQGQNGVSLETKLVHKLTLVADSLTKHLKPWTVPVSIFD
CEEHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
VRKYGAIGDGSTLNTTAIQKAIDACFVAGGGTVRIAGGEYVTGTIELKSGVMLEVAKGAR
HHHCCCCCCCCCCCHHHHHHHHHHEEEECCCEEEEECCCEEEEEEEECCCEEEEECCCCE
LLGSTNLKDYPDKVERFQSVMNVIHKYRISLIYAERAERVGICGEGEIYFRGEAKNFPGP
EECCCCCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCEEEEECCCCCCCC
ETIGALEGRPFGIRMIECNNVVLKGITLRNSAAWMQSYIYCRDLIFDGITVFNHANHNND
CCCCCCCCCCCEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHHCCEEEEECCCCCCC
ALDPDGCKNVIVRNCFFSSHDDAMCLKSASAKPCENILIENSTFYSTCNAFKLGTDTQGD
CCCCCHHHHHHHHHHCCCCCCCCHHHHCCCCCCCHHEEEECCCEEECCCCEECCCCCCCH
YRNIIARKLVLGGLPDASQSFRNRDDCSTGITLATVDGGNIENILIQDIEINRSRCPIFL
HHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEEEEECCCCCCEEE
RIGNRGRRLNEKMEHPGYLKNVVIKNIKGTDNRLQGSLISGIKEYPVENVVIRNMDIETV
EECCCCCHHHHHHCCCCHHHHHHHCCCCCCCCHHCCHHHHHHHHCCCCEEEEECCCEEEC
GGGTQKMATLEVPELEGGYPDAQDFRRNGLPAFGFYVRHAQNIYFKNIHITPKKAEERPL
CCCCCEEEEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHCCCEEEEEEEECCCCCCCCCH
FRVGKDVENLWVDSKEMADVKYTFRNPILGGDYPDPTIIRSGEDYYMTHSAFNYLPGLTI
HHHCCCHHHHCCCCHHHCEEEEEECCCCCCCCCCCCCEEECCCCEEEEHHHHHHCCCEEE
FHSRDLVNWQPVSVALTRYLGSVWAPDICKYQGKYYIYFTVSQGNDRFSNHVVYADSPEG
EECCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCEEEEEEEECCCCCCCCEEEEECCCCC
PWSEPVDLKIGYWIDPCHVVDESTG
CCCCCCEEEEEEEECCEEECCCCCC
>Mature Secondary Structure
MRLMIRNFFIAICSIIFCPYNLQGQNGVSLETKLVHKLTLVADSLTKHLKPWTVPVSIFD
CEEHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
VRKYGAIGDGSTLNTTAIQKAIDACFVAGGGTVRIAGGEYVTGTIELKSGVMLEVAKGAR
HHHCCCCCCCCCCCHHHHHHHHHHEEEECCCEEEEECCCEEEEEEEECCCEEEEECCCCE
LLGSTNLKDYPDKVERFQSVMNVIHKYRISLIYAERAERVGICGEGEIYFRGEAKNFPGP
EECCCCCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCEEEEECCCCCCCC
ETIGALEGRPFGIRMIECNNVVLKGITLRNSAAWMQSYIYCRDLIFDGITVFNHANHNND
CCCCCCCCCCCEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHHCCEEEEECCCCCCC
ALDPDGCKNVIVRNCFFSSHDDAMCLKSASAKPCENILIENSTFYSTCNAFKLGTDTQGD
CCCCCHHHHHHHHHHCCCCCCCCHHHHCCCCCCCHHEEEECCCEEECCCCEECCCCCCCH
YRNIIARKLVLGGLPDASQSFRNRDDCSTGITLATVDGGNIENILIQDIEINRSRCPIFL
HHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEEEEECCCCCCEEE
RIGNRGRRLNEKMEHPGYLKNVVIKNIKGTDNRLQGSLISGIKEYPVENVVIRNMDIETV
EECCCCCHHHHHHCCCCHHHHHHHCCCCCCCCHHCCHHHHHHHHCCCCEEEEECCCEEEC
GGGTQKMATLEVPELEGGYPDAQDFRRNGLPAFGFYVRHAQNIYFKNIHITPKKAEERPL
CCCCCEEEEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHCCCEEEEEEEECCCCCCCCCH
FRVGKDVENLWVDSKEMADVKYTFRNPILGGDYPDPTIIRSGEDYYMTHSAFNYLPGLTI
HHHCCCHHHHCCCCHHHCEEEEEECCCCCCCCCCCCCEEECCCCEEEEHHHHHHCCCEEE
FHSRDLVNWQPVSVALTRYLGSVWAPDICKYQGKYYIYFTVSQGNDRFSNHVVYADSPEG
EECCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCEEEEEEEECCCCCCCCEEEEECCCCC
PWSEPVDLKIGYWIDPCHVVDESTG
CCCCCCEEEEEEEECCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]