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The map label for this gene is ykfC [H]

Identifier: 150004673

GI number: 150004673

Start: 2750847

End: 2752502

Strand: Direct

Name: ykfC [H]

Synonym: BVU_2134

Alternate gene names: 150004673

Gene position: 2750847-2752502 (Clockwise)

Preceding gene: 150004672

Following gene: 150004674

Centisome position: 53.28

GC content: 42.57

Gene sequence:

>1656_bases
ATGAACGAAATTAAAACATCGTGTGCATCTACTGACCGGAAATGGAACACTTGGGAAAGCATAGACTGGAACAAGTGTGA
GATAGCGGTTAATAAGCTACAAGCACGTATTGTAAAAGCTCAAAAGGCGGGCAAACACGGCAGGGTGAAATCCTTGCAGT
GGGTGCTGACGCATTCGTTTTACGCTAAGGCTTTAGCCGTAAAGCGTGTTACATCAAACAGTGGCAGTGACACCGCAGGT
GTTGACAAGGTGAAATGGTCAACTCCCAATGCCAGATTCAAGGCTATCGGTGAACTGAAAAGAAGAGGCTACAAGCCCCA
GCCGTTAAAAAGGGTCAATATCAAAAAGAGTAATGGGAAACTACGTCCTTTAGGTATCCCGACAATGAAAGATAGGGCTA
TGCAGGCATTATATCTGCTTGCGTTGGAACCTGTATCGGAAACAACTGCGGACAGTAATTCCTACGGTTTCCGTAAAGAA
AGAAGCACTAGAGATGCAAGGGAACAATGTTTTTGTGTCCTTGCAAAGAAAGCTTCTCCCGAATGGATTATGGAGGGTGA
CATCAAAGGTTGTTTCGACCACATCAGCCATGAATGGCTGCTGAACAATATCCCTATGGATAAAGTGATGCTGCGAAAAT
GGCTCAAATGCGGTTTCGTCTTCAACAAGGAGCTATTCCCTACGGAAGAGGGTACTCCACAGGGCGGTATCATTTCACCA
ACTCTTGCGAATATGACACTGGACGGACTGCAAACTATGCTTGCAGAGAAGTATCACAAGAAATTTGTAAACAGGAAAAC
GACCTACTATCCCAAAGTACATCTTGTACGCTATGCGGATGATTTTATCATCACGGGTAGAAGCAAGGAAGCTTTGGAAG
AAATCAAACCGTTAGTAGTGGACTTTCTCAAAGAAAGGGGATTAACCCTGTCGGAAGAGAAAACAAAGATTACACACATT
GATGACGGATTTGATTTTCTTGGGTACAATATCCGAAAATACAAAGGAGTGCTTCTAATCAAACCGTCCAAAAAGAGCCT
GAAGAAATTCATGCAGAAAATCCGGGGAATCATTGATTCCAATAAAGGAAGCAAACAGGAATCACTTATAAGGCTCTTGA
ATCCTGTGATAACAGGCTGGGTAAACTACTATAAGAATTGTGTGGCTTCTGACACATTCAGAAAAGCTGACTACCTGATA
TTTGAAAAGTTATGGCAATGGGCTAAGAGACGACACCCCAAGAAAGGCAAATATTGGATTGCCGACCGATACTTTACACG
GGTAAAAAACCGTAACTGGTGCTTCGTGGCAAACTTCAAGAAAGGCAAGACTGATGACAGGATTGCACTGAAAAGGCTGT
ATGACACAAAGATTACCCGATATGTCAAGGTAAAAGGTGAAGCAAATCCCTTTGACCCCGAATGGACAGAATATTTTGAA
AAGCGCAAGACTTACAAGATGTTACAGTCGCTCAACGGTAGAAAATCGTTGCTGTACATGTGGGAAAGACAGAACCATTT
ATGTCCCGTATGTGGTAAACCCATAGACAAGGAACATCCTTGGGGAACTTCCCAACAAATAGTCAACGGCAAGAAAGTAA
ATTTTCTGCTGCATGACAGTTGTAGAAGAAAAGTCATTCAAACTAATAAGATGTAA

Upstream 100 bases:

>100_bases
GGATAGAGGTTGAAACATCACCTCACACGAAAGTGGGCAGACTTCCGCATGGTGGATGTTTTACAAGAAACTTATAGAAC
TTATTAAAGGAGAAAAGCAA

Downstream 100 bases:

>100_bases
CTATGAGCTGGTTTCTATTAAATAGAAATTTAACACTGCTTGAGCCGTATGATTGGAAACTTTCATGTACGGTTCTGAGG
GGGGAAAGGGGCAGTAATGC

Product: putative reverse transcriptase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 551; Mature: 551

Protein sequence:

>551_residues
MNEIKTSCASTDRKWNTWESIDWNKCEIAVNKLQARIVKAQKAGKHGRVKSLQWVLTHSFYAKALAVKRVTSNSGSDTAG
VDKVKWSTPNARFKAIGELKRRGYKPQPLKRVNIKKSNGKLRPLGIPTMKDRAMQALYLLALEPVSETTADSNSYGFRKE
RSTRDAREQCFCVLAKKASPEWIMEGDIKGCFDHISHEWLLNNIPMDKVMLRKWLKCGFVFNKELFPTEEGTPQGGIISP
TLANMTLDGLQTMLAEKYHKKFVNRKTTYYPKVHLVRYADDFIITGRSKEALEEIKPLVVDFLKERGLTLSEEKTKITHI
DDGFDFLGYNIRKYKGVLLIKPSKKSLKKFMQKIRGIIDSNKGSKQESLIRLLNPVITGWVNYYKNCVASDTFRKADYLI
FEKLWQWAKRRHPKKGKYWIADRYFTRVKNRNWCFVANFKKGKTDDRIALKRLYDTKITRYVKVKGEANPFDPEWTEYFE
KRKTYKMLQSLNGRKSLLYMWERQNHLCPVCGKPIDKEHPWGTSQQIVNGKKVNFLLHDSCRRKVIQTNKM

Sequences:

>Translated_551_residues
MNEIKTSCASTDRKWNTWESIDWNKCEIAVNKLQARIVKAQKAGKHGRVKSLQWVLTHSFYAKALAVKRVTSNSGSDTAG
VDKVKWSTPNARFKAIGELKRRGYKPQPLKRVNIKKSNGKLRPLGIPTMKDRAMQALYLLALEPVSETTADSNSYGFRKE
RSTRDAREQCFCVLAKKASPEWIMEGDIKGCFDHISHEWLLNNIPMDKVMLRKWLKCGFVFNKELFPTEEGTPQGGIISP
TLANMTLDGLQTMLAEKYHKKFVNRKTTYYPKVHLVRYADDFIITGRSKEALEEIKPLVVDFLKERGLTLSEEKTKITHI
DDGFDFLGYNIRKYKGVLLIKPSKKSLKKFMQKIRGIIDSNKGSKQESLIRLLNPVITGWVNYYKNCVASDTFRKADYLI
FEKLWQWAKRRHPKKGKYWIADRYFTRVKNRNWCFVANFKKGKTDDRIALKRLYDTKITRYVKVKGEANPFDPEWTEYFE
KRKTYKMLQSLNGRKSLLYMWERQNHLCPVCGKPIDKEHPWGTSQQIVNGKKVNFLLHDSCRRKVIQTNKM
>Mature_551_residues
MNEIKTSCASTDRKWNTWESIDWNKCEIAVNKLQARIVKAQKAGKHGRVKSLQWVLTHSFYAKALAVKRVTSNSGSDTAG
VDKVKWSTPNARFKAIGELKRRGYKPQPLKRVNIKKSNGKLRPLGIPTMKDRAMQALYLLALEPVSETTADSNSYGFRKE
RSTRDAREQCFCVLAKKASPEWIMEGDIKGCFDHISHEWLLNNIPMDKVMLRKWLKCGFVFNKELFPTEEGTPQGGIISP
TLANMTLDGLQTMLAEKYHKKFVNRKTTYYPKVHLVRYADDFIITGRSKEALEEIKPLVVDFLKERGLTLSEEKTKITHI
DDGFDFLGYNIRKYKGVLLIKPSKKSLKKFMQKIRGIIDSNKGSKQESLIRLLNPVITGWVNYYKNCVASDTFRKADYLI
FEKLWQWAKRRHPKKGKYWIADRYFTRVKNRNWCFVANFKKGKTDDRIALKRLYDTKITRYVKVKGEANPFDPEWTEYFE
KRKTYKMLQSLNGRKSLLYMWERQNHLCPVCGKPIDKEHPWGTSQQIVNGKKVNFLLHDSCRRKVIQTNKM

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=328, Percent_Identity=25.9146341463415, Blast_Score=103, Evalue=1e-22,
Organism=Saccharomyces cerevisiae, GI6226520, Length=317, Percent_Identity=29.6529968454259, Blast_Score=101, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 64223; Mature: 64223

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEIKTSCASTDRKWNTWESIDWNKCEIAVNKLQARIVKAQKAGKHGRVKSLQWVLTHSF
CCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
YAKALAVKRVTSNSGSDTAGVDKVKWSTPNARFKAIGELKRRGYKPQPLKRVNIKKSNGK
HHHHHHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
LRPLGIPTMKDRAMQALYLLALEPVSETTADSNSYGFRKERSTRDAREQCFCVLAKKASP
EEECCCCCHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
EWIMEGDIKGCFDHISHEWLLNNIPMDKVMLRKWLKCGFVFNKELFPTEEGTPQGGIISP
CEEEECCHHHHHHHHCHHHHHCCCCHHHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCCC
TLANMTLDGLQTMLAEKYHKKFVNRKTTYYPKVHLVRYADDFIITGRSKEALEEIKPLVV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCEEEECCCHHHHHHHHHHHH
DFLKERGLTLSEEKTKITHIDDGFDFLGYNIRKYKGVLLIKPSKKSLKKFMQKIRGIIDS
HHHHHCCCCCCCCCCEEEEECCCCHHHCCCHHHHCCEEEECCCHHHHHHHHHHHHHHHCC
NKGSKQESLIRLLNPVITGWVNYYKNCVASDTFRKADYLIFEKLWQWAKRRHPKKGKYWI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
ADRYFTRVKNRNWCFVANFKKGKTDDRIALKRLYDTKITRYVKVKGEANPFDPEWTEYFE
HHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCEEEEEEECCCCCCCCHHHHHHH
KRKTYKMLQSLNGRKSLLYMWERQNHLCPVCGKPIDKEHPWGTSQQIVNGKKVNFLLHDS
HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEECCH
CRRKVIQTNKM
HHHHHHHCCCC
>Mature Secondary Structure
MNEIKTSCASTDRKWNTWESIDWNKCEIAVNKLQARIVKAQKAGKHGRVKSLQWVLTHSF
CCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
YAKALAVKRVTSNSGSDTAGVDKVKWSTPNARFKAIGELKRRGYKPQPLKRVNIKKSNGK
HHHHHHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
LRPLGIPTMKDRAMQALYLLALEPVSETTADSNSYGFRKERSTRDAREQCFCVLAKKASP
EEECCCCCHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
EWIMEGDIKGCFDHISHEWLLNNIPMDKVMLRKWLKCGFVFNKELFPTEEGTPQGGIISP
CEEEECCHHHHHHHHCHHHHHCCCCHHHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCCC
TLANMTLDGLQTMLAEKYHKKFVNRKTTYYPKVHLVRYADDFIITGRSKEALEEIKPLVV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCEEEECCCHHHHHHHHHHHH
DFLKERGLTLSEEKTKITHIDDGFDFLGYNIRKYKGVLLIKPSKKSLKKFMQKIRGIIDS
HHHHHCCCCCCCCCCEEEEECCCCHHHCCCHHHHCCEEEECCCHHHHHHHHHHHHHHHCC
NKGSKQESLIRLLNPVITGWVNYYKNCVASDTFRKADYLIFEKLWQWAKRRHPKKGKYWI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
ADRYFTRVKNRNWCFVANFKKGKTDDRIALKRLYDTKITRYVKVKGEANPFDPEWTEYFE
HHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCEEEEEEECCCCCCCCHHHHHHH
KRKTYKMLQSLNGRKSLLYMWERQNHLCPVCGKPIDKEHPWGTSQQIVNGKKVNFLLHDS
HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEECCH
CRRKVIQTNKM
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]