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The map label for this gene is ydgJ [C]

Identifier: 150004584

GI number: 150004584

Start: 2642478

End: 2644040

Strand: Reverse

Name: ydgJ [C]

Synonym: BVU_2041

Alternate gene names: 150004584

Gene position: 2644040-2642478 (Counterclockwise)

Preceding gene: 150004588

Following gene: 150004583

Centisome position: 51.21

GC content: 45.17

Gene sequence:

>1563_bases
ATGAGAACCTTTAAATCATTGATGATAAGCTTATGTATGGGTACAACCCTATGCATGTGCTTACCACAAACCACGACAGC
ACAAACCGTAAGTTCAGGAGATTCCTGGACATGGGACAAAGGAACCATTGTGATTGATACTCCTGAACGTCCGACCGGCC
AGAAAAGCGTATTAGGCTTAACCACCCCTAAAATGGAGGTAGTCCGCGTAGGATTTGTCGGATTGGGAATGCGAGGCCCC
GGAGCCGTAGAGCGCTTCACTTATATTCCCGGTACACAAATTGTGGCCCTTTGTGATTATGAAGCATCCCGTGCAGAAAA
ATGTCAGGATATCCTAAAGAAAGCATCTATGCCGAAAGCTGCCATTTATTCCGGAGAAAAGGGATATGAAGAATTATGTA
AACGTACAGACATAGATTTAGTTTATATCGCCGCAGACTGGTTGCATCATTTCCCGGTAGCAAAATGCGCATTGGAAAAC
GGTAAAAATGTAGCTATTGAAGTTCCCTCGGCCATGAACCTGCAAGAATGCTGGGACTTAATCAACCTGAGTGAAAAAAC
CCGCAAGCATTGCATGATTCTTGAGAACTGTTGCTATGACTGGTTTGAAATGAATACACTGAATATGGCACAACAAGGTG
TATTTGGCGAAGTAATCCGTGCCCAAGGAGCCTACATTCACAATTTAAGCCCGTTTTGGGATCATTATTGGAAAAACGGC
AAAGAAGACAAACTGGGATGGCGTTTGGATTATAACATGAAACACCGGGGTGATGTATATGCCACTCACGGCCTGGGTCC
TGTAGCACAAGCATTGGATATCCATCGTGGTGACCGTATAACCACTTTAGTAGCTATGGACACCAAATCTGTTGTTGGTA
AAGATTTAGTGGAGAAGAGAACCGGCGAAGAATGTAAAGAATTCCGTAACGGAGACCATACCACCACCCTGCTTCGCACA
GCAAATGGAAAAGTTATTGAAATCCAACATAATGTAATGACTCCCCAACCTTACAACCGCCTGTACCAACTGACAGGAAG
CAAAGGGTTTGCCAATAAATATCCCGTTGAAGGATATGCTTTGGATGCAGCACAACTGACCGCATCGGGTGTGCAACCCA
AAGTAGACGATTTGAACTCTCACGGATTCTTACCTCAGGCAGAAATGGAAGCACTTGTTGAGAAATACCAGCATCCTATT
TTAAAGAAATATGGTGAAATGGCAAAAGAAGTCGGCGGCCATGGCGGTATGGACTTCATCATGGACAGCCGTCTGGTATA
TTGCCTGCAAAACGGACTGCCTTTGGACATGGATGTATATGACCTGGCCGAATGGTGCTGTTTGGCCGAACTGGGAGCTA
TCTCTATGGATAACGGCTGTGCGGCAGTAGCCTTCCCGGACTTCACACGAGGTGAATGGAACGTGACCAAAGGTTACAAA
CATGCATACGCTTCACCCGAAGACGAAAACGCAAACATGGAAAAAGCAAAGGCTTTCACCGCGAAACTGAAAGAGCAGGG
AGCTAAAGAATGGGCGAAAGAAGCTAAGAAGAAAAAGAAATAA

Upstream 100 bases:

>100_bases
AAAATATTCTTATTATTAACATGAAATATAATTAAGTTTCAAGTGGTTGACTCAAGAAACAACCTATATTTTTAAATTTT
AATCTTTAAATTCAAAAAGT

Downstream 100 bases:

>100_bases
ACAGGAATAAACAAGAAAAAATGTGCCGGAAGTCACTCTGTCATAAAAGGCAGCCCAATTCTTCAGGCACATTTTTTATG
CCGTCCGAACAACAACCGTT

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 520; Mature: 520

Protein sequence:

>520_residues
MRTFKSLMISLCMGTTLCMCLPQTTTAQTVSSGDSWTWDKGTIVIDTPERPTGQKSVLGLTTPKMEVVRVGFVGLGMRGP
GAVERFTYIPGTQIVALCDYEASRAEKCQDILKKASMPKAAIYSGEKGYEELCKRTDIDLVYIAADWLHHFPVAKCALEN
GKNVAIEVPSAMNLQECWDLINLSEKTRKHCMILENCCYDWFEMNTLNMAQQGVFGEVIRAQGAYIHNLSPFWDHYWKNG
KEDKLGWRLDYNMKHRGDVYATHGLGPVAQALDIHRGDRITTLVAMDTKSVVGKDLVEKRTGEECKEFRNGDHTTTLLRT
ANGKVIEIQHNVMTPQPYNRLYQLTGSKGFANKYPVEGYALDAAQLTASGVQPKVDDLNSHGFLPQAEMEALVEKYQHPI
LKKYGEMAKEVGGHGGMDFIMDSRLVYCLQNGLPLDMDVYDLAEWCCLAELGAISMDNGCAAVAFPDFTRGEWNVTKGYK
HAYASPEDENANMEKAKAFTAKLKEQGAKEWAKEAKKKKK

Sequences:

>Translated_520_residues
MRTFKSLMISLCMGTTLCMCLPQTTTAQTVSSGDSWTWDKGTIVIDTPERPTGQKSVLGLTTPKMEVVRVGFVGLGMRGP
GAVERFTYIPGTQIVALCDYEASRAEKCQDILKKASMPKAAIYSGEKGYEELCKRTDIDLVYIAADWLHHFPVAKCALEN
GKNVAIEVPSAMNLQECWDLINLSEKTRKHCMILENCCYDWFEMNTLNMAQQGVFGEVIRAQGAYIHNLSPFWDHYWKNG
KEDKLGWRLDYNMKHRGDVYATHGLGPVAQALDIHRGDRITTLVAMDTKSVVGKDLVEKRTGEECKEFRNGDHTTTLLRT
ANGKVIEIQHNVMTPQPYNRLYQLTGSKGFANKYPVEGYALDAAQLTASGVQPKVDDLNSHGFLPQAEMEALVEKYQHPI
LKKYGEMAKEVGGHGGMDFIMDSRLVYCLQNGLPLDMDVYDLAEWCCLAELGAISMDNGCAAVAFPDFTRGEWNVTKGYK
HAYASPEDENANMEKAKAFTAKLKEQGAKEWAKEAKKKKK
>Mature_520_residues
MRTFKSLMISLCMGTTLCMCLPQTTTAQTVSSGDSWTWDKGTIVIDTPERPTGQKSVLGLTTPKMEVVRVGFVGLGMRGP
GAVERFTYIPGTQIVALCDYEASRAEKCQDILKKASMPKAAIYSGEKGYEELCKRTDIDLVYIAADWLHHFPVAKCALEN
GKNVAIEVPSAMNLQECWDLINLSEKTRKHCMILENCCYDWFEMNTLNMAQQGVFGEVIRAQGAYIHNLSPFWDHYWKNG
KEDKLGWRLDYNMKHRGDVYATHGLGPVAQALDIHRGDRITTLVAMDTKSVVGKDLVEKRTGEECKEFRNGDHTTTLLRT
ANGKVIEIQHNVMTPQPYNRLYQLTGSKGFANKYPVEGYALDAAQLTASGVQPKVDDLNSHGFLPQAEMEALVEKYQHPI
LKKYGEMAKEVGGHGGMDFIMDSRLVYCLQNGLPLDMDVYDLAEWCCLAELGAISMDNGCAAVAFPDFTRGEWNVTKGYK
HAYASPEDENANMEKAKAFTAKLKEQGAKEWAKEAKKKKK

Specific function: Glycosidase

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family. Glycosyl hydrolase 109 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): G1095_BACV8 (A6L1Z2)

Other databases:

- EMBL:   CP000139
- RefSeq:   YP_001299328.1
- ProteinModelPortal:   A6L1Z2
- SMR:   A6L1Z2
- STRING:   A6L1Z2
- GeneID:   5303006
- GenomeReviews:   CP000139_GR
- KEGG:   bvu:BVU_2041
- NMPDR:   fig|435590.6.peg.1916
- eggNOG:   COG0673
- HOGENOM:   HBG611861
- OMA:   EDENANM
- ProtClustDB:   CLSK2520892
- GO:   GO:0005488
- InterPro:   IPR016040
- InterPro:   IPR000683
- Gene3D:   G3DSA:3.40.50.720

Pfam domain/function: PF01408 GFO_IDH_MocA

EC number: 1.-.-.- [C]

Molecular weight: Translated: 58126; Mature: 58126

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: NA

Important sites: BINDING 99-99 BINDING 196-196 BINDING 225-225 BINDING 248-248 BINDING 260-260 BINDING 338-338

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTFKSLMISLCMGTTLCMCLPQTTTAQTVSSGDSWTWDKGTIVIDTPERPTGQKSVLGL
CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEECCCEEEEECCCCCCCCCCEEEC
TTPKMEVVRVGFVGLGMRGPGAVERFTYIPGTQIVALCDYEASRAEKCQDILKKASMPKA
CCCCEEEEEEEEEEECCCCCCCHHHEEECCCCCEEEEECCCHHHHHHHHHHHHHCCCCCH
AIYSGEKGYEELCKRTDIDLVYIAADWLHHFPVAKCALENGKNVAIEVPSAMNLQECWDL
HHCCCCCCHHHHHHHCCCCEEEEEHHHHHHCCHHHHHHCCCCEEEEECCCCCCHHHHHHH
INLSEKTRKHCMILENCCYDWFEMNTLNMAQQGVFGEVIRAQGAYIHNLSPFWDHYWKNG
HCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHHHCCCEEECCCHHHHHHHCCC
KEDKLGWRLDYNMKHRGDVYATHGLGPVAQALDIHRGDRITTLVAMDTKSVVGKDLVEKR
CCCCCCEEEECCCCCCCCEEEECCCCHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHH
TGEECKEFRNGDHTTTLLRTANGKVIEIQHNVMTPQPYNRLYQLTGSKGFANKYPVEGYA
CCHHHHHHHCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHEEECCCCCCCCCCCCCCEE
LDAAQLTASGVQPKVDDLNSHGFLPQAEMEALVEKYQHPILKKYGEMAKEVGGHGGMDFI
ECHHHHHHCCCCCCHHCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHH
MDSRLVYCLQNGLPLDMDVYDLAEWCCLAELGAISMDNGCAAVAFPDFTRGEWNVTKGYK
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCEEECCCEEEEECCCCCCCCEEECCCCH
HAYASPEDENANMEKAKAFTAKLKEQGAKEWAKEAKKKKK
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRTFKSLMISLCMGTTLCMCLPQTTTAQTVSSGDSWTWDKGTIVIDTPERPTGQKSVLGL
CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEECCCEEEEECCCCCCCCCCEEEC
TTPKMEVVRVGFVGLGMRGPGAVERFTYIPGTQIVALCDYEASRAEKCQDILKKASMPKA
CCCCEEEEEEEEEEECCCCCCCHHHEEECCCCCEEEEECCCHHHHHHHHHHHHHCCCCCH
AIYSGEKGYEELCKRTDIDLVYIAADWLHHFPVAKCALENGKNVAIEVPSAMNLQECWDL
HHCCCCCCHHHHHHHCCCCEEEEEHHHHHHCCHHHHHHCCCCEEEEECCCCCCHHHHHHH
INLSEKTRKHCMILENCCYDWFEMNTLNMAQQGVFGEVIRAQGAYIHNLSPFWDHYWKNG
HCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHHHCCCEEECCCHHHHHHHCCC
KEDKLGWRLDYNMKHRGDVYATHGLGPVAQALDIHRGDRITTLVAMDTKSVVGKDLVEKR
CCCCCCEEEECCCCCCCCEEEECCCCHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHH
TGEECKEFRNGDHTTTLLRTANGKVIEIQHNVMTPQPYNRLYQLTGSKGFANKYPVEGYA
CCHHHHHHHCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHEEECCCCCCCCCCCCCCEE
LDAAQLTASGVQPKVDDLNSHGFLPQAEMEALVEKYQHPILKKYGEMAKEVGGHGGMDFI
ECHHHHHHCCCCCCHHCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHH
MDSRLVYCLQNGLPLDMDVYDLAEWCCLAELGAISMDNGCAAVAFPDFTRGEWNVTKGYK
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCEEECCCEEEEECCCCCCCCEEECCCCH
HAYASPEDENANMEKAKAFTAKLKEQGAKEWAKEAKKKKK
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA