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The map label for this gene is 150004570

Identifier: 150004570

GI number: 150004570

Start: 2621320

End: 2621910

Strand: Direct

Name: 150004570

Synonym: BVU_2027

Alternate gene names: NA

Gene position: 2621320-2621910 (Clockwise)

Preceding gene: 150004569

Following gene: 150004571

Centisome position: 50.77

GC content: 29.27

Gene sequence:

>591_bases
ATGGAAAACACAGAGAAACTGATTGTAGAACAACTGAAAAATGGCAACGAAGATGCTTATAAATACATCTATGATTATCA
TTATGTTCTTTTATGTCATGTAGCAAATCAATATTTGAACGATAATTTTTTATCGGAAACTATAGTTGGAGATGTAATAT
TTCACCTTTGGGAAATCAGAGAAACTTTAAACATTACTATTTCTATTAGAAGTTATCTGATAAAGGCTGTTCGTAATCGT
TGTATAGACTATCTGAAATCTAGATCTGAAAAAAAGGAAATTTCATTTTCAGTTTTAGTACCGGAAGAGATGTCTGAAGA
AAAGTATTTGCAGTCGGATAATTATCCTTTGGGAATATTATTAGAACGTGAATTGGAGCATGAAATCCGTATGGCAATAG
ATAAACTACCGGTTGAATGTAGATGTGTTTTTGAAAAAAGTAGATTTGAGGAGAAAAAATATGAAGAAATTTCTCAGGAA
TTAGGTATTTCTATAAATACGGTTAAGTATCATATAAAGAATGCATTATCTTTCCTTCAGACTGAATTGAGCAAATATTT
AATTGCTTTGATTTTATTTTTTTCGTGTTAA

Upstream 100 bases:

>100_bases
AAGATTAACGGATTTGTTTTTTTGCTCTTTTATAAAGTTACTCAGAATTAATTTTTAAATTTGTTCCCGTTAACTTTATT
CCTTTTTCAAAAGAAATAAA

Downstream 100 bases:

>100_bases
AACAGAAAAAAGTTCTTTTAGGACTACCCTGTATTTAAAATAAATCGTCTTCACTTTAGAAACAACAAAGATGAAAGCAG
AAAAAGAACATATTGATGAA

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma-H Factor; RNA Polymerase Sigma Factor; ECF-Type RNA Polymerase Sigma Factor; ECF Sigma Factor

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MENTEKLIVEQLKNGNEDAYKYIYDYHYVLLCHVANQYLNDNFLSETIVGDVIFHLWEIRETLNITISIRSYLIKAVRNR
CIDYLKSRSEKKEISFSVLVPEEMSEEKYLQSDNYPLGILLERELEHEIRMAIDKLPVECRCVFEKSRFEEKKYEEISQE
LGISINTVKYHIKNALSFLQTELSKYLIALILFFSC

Sequences:

>Translated_196_residues
MENTEKLIVEQLKNGNEDAYKYIYDYHYVLLCHVANQYLNDNFLSETIVGDVIFHLWEIRETLNITISIRSYLIKAVRNR
CIDYLKSRSEKKEISFSVLVPEEMSEEKYLQSDNYPLGILLERELEHEIRMAIDKLPVECRCVFEKSRFEEKKYEEISQE
LGISINTVKYHIKNALSFLQTELSKYLIALILFFSC
>Mature_196_residues
MENTEKLIVEQLKNGNEDAYKYIYDYHYVLLCHVANQYLNDNFLSETIVGDVIFHLWEIRETLNITISIRSYLIKAVRNR
CIDYLKSRSEKKEISFSVLVPEEMSEEKYLQSDNYPLGILLERELEHEIRMAIDKLPVECRCVFEKSRFEEKKYEEISQE
LGISINTVKYHIKNALSFLQTELSKYLIALILFFSC

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23284; Mature: 23284

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENTEKLIVEQLKNGNEDAYKYIYDYHYVLLCHVANQYLNDNFLSETIVGDVIFHLWEIR
CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
ETLNITISIRSYLIKAVRNRCIDYLKSRSEKKEISFSVLVPEEMSEEKYLQSDNYPLGIL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCEEEEECCHHHCHHHHHCCCCCCEEEE
LERELEHEIRMAIDKLPVECRCVFEKSRFEEKKYEEISQELGISINTVKYHIKNALSFLQ
EHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
TELSKYLIALILFFSC
HHHHHHHHHHHHHHCC
>Mature Secondary Structure
MENTEKLIVEQLKNGNEDAYKYIYDYHYVLLCHVANQYLNDNFLSETIVGDVIFHLWEIR
CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
ETLNITISIRSYLIKAVRNRCIDYLKSRSEKKEISFSVLVPEEMSEEKYLQSDNYPLGIL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCEEEEECCHHHCHHHHHCCCCCCEEEE
LERELEHEIRMAIDKLPVECRCVFEKSRFEEKKYEEISQELGISINTVKYHIKNALSFLQ
EHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
TELSKYLIALILFFSC
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA