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The map label for this gene is 150004263

Identifier: 150004263

GI number: 150004263

Start: 2200733

End: 2201317

Strand: Reverse

Name: 150004263

Synonym: BVU_1709

Alternate gene names: NA

Gene position: 2201317-2200733 (Counterclockwise)

Preceding gene: 150004268

Following gene: 150004261

Centisome position: 42.63

GC content: 40.51

Gene sequence:

>585_bases
ATGGAAAACAAAACGGATCAGGCAGCAATAAATCGGCTATTGAAATCCCTGTCTCAAGGAGAGATGGGAGCTTTTAAGAA
GCTATTCAAACTGTTCTATCCAGTCCTGTATGCATATGCGCATAAATTCTTAGTAAAAGAAGAGGCACAGGAAGTCGCAC
AGGACACCTTGATATGGTTATGGGAAAACAGACAAGATTTGCCTGCTGAAAAATCCTTGACAGCCTATCTGTTCAGCATG
ATTCATAACAAGAGCCTTAACCTAATTGCAAAGCAAGAAGCTGTAGCTCGGGCAGAAACAAACTATTATATATTACACCA
GTCCCTCATTGAAGAATACTCGCTTTGGCAATTAAGAGATTTGATGGACAACATAGACAAGGCGGTGGCTAACCTGCCAG
ATGAATACCGAAACGCTTTTGTGCTGTACAAGTTCAAAGGTCTGAGTGTGCAGGAGATTGCAGATGTCACCAACGTTTCC
GATAAAACGATTTATTACCGCATCAATCAAGCTACAAAAATACTAAGGGTAATTTTAAAAGACTATCTGTCGCTACTCCA
TCTTTGGCTTATAGACTTTGGTTGA

Upstream 100 bases:

>100_bases
GTTGTCCTTTTATGATGTAGACAGTCCTCAACACGTCTTTTCTAATGGAATCTCGATTTATTTAAAAAAAAAACGTATTT
TTGCAAAAAAAAAGGTGAGT

Downstream 100 bases:

>100_bases
TATCCGCAGGAAGCTGTCCAGTTTTCCACCGCTTCCATCAGCCATTTATGGATTGTGGCGGAGACAGAAATCCAATCCAT
ATATCCCAATTTGCGTTCCA

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-H Factor; RNA Polymerase Sigma-E Factor Protein; ECF Subfamily RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor Sigma-70 Family; ECF-Type RNA Polymerase Sigma Factor

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MENKTDQAAINRLLKSLSQGEMGAFKKLFKLFYPVLYAYAHKFLVKEEAQEVAQDTLIWLWENRQDLPAEKSLTAYLFSM
IHNKSLNLIAKQEAVARAETNYYILHQSLIEEYSLWQLRDLMDNIDKAVANLPDEYRNAFVLYKFKGLSVQEIADVTNVS
DKTIYYRINQATKILRVILKDYLSLLHLWLIDFG

Sequences:

>Translated_194_residues
MENKTDQAAINRLLKSLSQGEMGAFKKLFKLFYPVLYAYAHKFLVKEEAQEVAQDTLIWLWENRQDLPAEKSLTAYLFSM
IHNKSLNLIAKQEAVARAETNYYILHQSLIEEYSLWQLRDLMDNIDKAVANLPDEYRNAFVLYKFKGLSVQEIADVTNVS
DKTIYYRINQATKILRVILKDYLSLLHLWLIDFG
>Mature_194_residues
MENKTDQAAINRLLKSLSQGEMGAFKKLFKLFYPVLYAYAHKFLVKEEAQEVAQDTLIWLWENRQDLPAEKSLTAYLFSM
IHNKSLNLIAKQEAVARAETNYYILHQSLIEEYSLWQLRDLMDNIDKAVANLPDEYRNAFVLYKFKGLSVQEIADVTNVS
DKTIYYRINQATKILRVILKDYLSLLHLWLIDFG

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22719; Mature: 22719

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENKTDQAAINRLLKSLSQGEMGAFKKLFKLFYPVLYAYAHKFLVKEEAQEVAQDTLIWL
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
WENRQDLPAEKSLTAYLFSMIHNKSLNLIAKQEAVARAETNYYILHQSLIEEYSLWQLRD
ECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LMDNIDKAVANLPDEYRNAFVLYKFKGLSVQEIADVTNVSDKTIYYRINQATKILRVILK
HHHHHHHHHHCCCHHHCCEEEEEEECCCCHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHH
DYLSLLHLWLIDFG
HHHHHHHHHHHCCC
>Mature Secondary Structure
MENKTDQAAINRLLKSLSQGEMGAFKKLFKLFYPVLYAYAHKFLVKEEAQEVAQDTLIWL
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
WENRQDLPAEKSLTAYLFSMIHNKSLNLIAKQEAVARAETNYYILHQSLIEEYSLWQLRD
ECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LMDNIDKAVANLPDEYRNAFVLYKFKGLSVQEIADVTNVSDKTIYYRINQATKILRVILK
HHHHHHHHHHCCCHHHCCEEEEEEECCCCHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHH
DYLSLLHLWLIDFG
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA