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The map label for this gene is nlpD [C]

Identifier: 150004245

GI number: 150004245

Start: 2176547

End: 2177170

Strand: Direct

Name: nlpD [C]

Synonym: BVU_1686

Alternate gene names: 150004245

Gene position: 2176547-2177170 (Clockwise)

Preceding gene: 150004244

Following gene: 150004246

Centisome position: 42.16

GC content: 42.31

Gene sequence:

>624_bases
ATGAAAAGCACACAATTACTATTTTTATTGTTCATAAGTGTGGCGGCATGGGCTGGGGGGCCGGCCAAGAGTAATTTTAC
CGCAATGGAAGTAAACCATATCAGAGTCAAGACTCCCGGGCTCTTTAACGGGCGCAAGAGTTTCTCCATTCATCTGGATA
GTATAAAAGAGAATGAATATTGTTTTCCTCTTCCCGGTGGTAAAGTGATTTCTGCATACGGAGCCCGCCGGGGGCACAGT
GGAACGGATATAAAGACTAAGGCCAATGATACTATCCGTTGTGCGTTTGATGGAATAGTACGTATGGCAAAAACATACGC
TGCTTATGGAAATGTAGTTGTTGTGCGTCATGATAATGGATTGGAAAGTATTTATAGTCATAATTCCCGGAATTTGGTAA
AATCCGGAGATATCGTGAAGGCCGGTGATGCAGTAGGATTGACAGGCAGAACCGGACGTGCCACTACTGAACACCTTCAT
CTGGAATTCCGGATAGATGGACAACATTTCAATCCGAATCTGATTTTTGATATGAAAGACCGTACTTTGCACAAAACGGA
AATTGTTTGTACCAAAGCCGGCAATAGAGTGATAGTAAAACAGAATTTAACACCTAAAAAATAG

Upstream 100 bases:

>100_bases
CAAGGAAGGTTTGCAGGAAGCGGCAGATTATATGTTGGAGCTCTTGAAAGAGTTTGCAGCGTCCAAGGATGAAGAATTAA
TTTATTTTTAAAATGAGATA

Downstream 100 bases:

>100_bases
ACGATGGACATAGAAAAAGCAATCACCGAAGGAATTGTATTCAAAGGTGGTAAATCTCCTAGTGGTAAGCAAGAAGATAA
AGTGAAGACCAAGGCTAAAA

Product: putative metalloendopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MKSTQLLFLLFISVAAWAGGPAKSNFTAMEVNHIRVKTPGLFNGRKSFSIHLDSIKENEYCFPLPGGKVISAYGARRGHS
GTDIKTKANDTIRCAFDGIVRMAKTYAAYGNVVVVRHDNGLESIYSHNSRNLVKSGDIVKAGDAVGLTGRTGRATTEHLH
LEFRIDGQHFNPNLIFDMKDRTLHKTEIVCTKAGNRVIVKQNLTPKK

Sequences:

>Translated_207_residues
MKSTQLLFLLFISVAAWAGGPAKSNFTAMEVNHIRVKTPGLFNGRKSFSIHLDSIKENEYCFPLPGGKVISAYGARRGHS
GTDIKTKANDTIRCAFDGIVRMAKTYAAYGNVVVVRHDNGLESIYSHNSRNLVKSGDIVKAGDAVGLTGRTGRATTEHLH
LEFRIDGQHFNPNLIFDMKDRTLHKTEIVCTKAGNRVIVKQNLTPKK
>Mature_207_residues
MKSTQLLFLLFISVAAWAGGPAKSNFTAMEVNHIRVKTPGLFNGRKSFSIHLDSIKENEYCFPLPGGKVISAYGARRGHS
GTDIKTKANDTIRCAFDGIVRMAKTYAAYGNVVVVRHDNGLESIYSHNSRNLVKSGDIVKAGDAVGLTGRTGRATTEHLH
LEFRIDGQHFNPNLIFDMKDRTLHKTEIVCTKAGNRVIVKQNLTPKK

Specific function: May Be Involved In Stationary-Phase Survival. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M23B family [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=108, Percent_Identity=36.1111111111111, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI87081989, Length=94, Percent_Identity=39.3617021276596, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR007340
- InterPro:   IPR016047
- InterPro:   IPR002886 [H]

Pfam domain/function: PF04225 OapA; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 22827; Mature: 22827

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSTQLLFLLFISVAAWAGGPAKSNFTAMEVNHIRVKTPGLFNGRKSFSIHLDSIKENEY
CCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCE
CFPLPGGKVISAYGARRGHSGTDIKTKANDTIRCAFDGIVRMAKTYAAYGNVVVVRHDNG
EEECCCCCEEEECCCCCCCCCCCEEECCCCEEEEEHHHHHHHHHHHHHHCCEEEEEECCC
LESIYSHNSRNLVKSGDIVKAGDAVGLTGRTGRATTEHLHLEFRIDGQHFNPNLIFDMKD
HHHHHCCCCCCEEECCCEEECCCEEEECCCCCCCEEEEEEEEEEECCCCCCCEEEEEECC
RTLHKTEIVCTKAGNRVIVKQNLTPKK
CEEEEEEEEEEECCCEEEEECCCCCCC
>Mature Secondary Structure
MKSTQLLFLLFISVAAWAGGPAKSNFTAMEVNHIRVKTPGLFNGRKSFSIHLDSIKENEY
CCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCE
CFPLPGGKVISAYGARRGHSGTDIKTKANDTIRCAFDGIVRMAKTYAAYGNVVVVRHDNG
EEECCCCCEEEECCCCCCCCCCCEEECCCCEEEEEHHHHHHHHHHHHHHCCEEEEEECCC
LESIYSHNSRNLVKSGDIVKAGDAVGLTGRTGRATTEHLHLEFRIDGQHFNPNLIFDMKD
HHHHHCCCCCCEEECCCEEECCCEEEECCCCCCCEEEEEEEEEEECCCCCCCEEEEEECC
RTLHKTEIVCTKAGNRVIVKQNLTPKK
CEEEEEEEEEEECCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]