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The map label for this gene is ylmD [H]

Identifier: 150004243

GI number: 150004243

Start: 2175056

End: 2175838

Strand: Direct

Name: ylmD [H]

Synonym: BVU_1684

Alternate gene names: 150004243

Gene position: 2175056-2175838 (Clockwise)

Preceding gene: 150004242

Following gene: 150004244

Centisome position: 42.13

GC content: 45.34

Gene sequence:

>783_bases
ATGAAACGGCTGACATCAGATAATAAAATGTTGGGATATGAGCTGATGAAGGCATATCCCAACATTTCTTGTTTTTCTAC
CACCCGTCACGGAGGTTGTAGTAAGGGAAACTACGCTTCGTTCAATTGTAACGGATATTGTGGGGACGAGGCAGAAGATG
TGAATCGCAACCGGGAATTGCTGCGTAGCTTGTTACCCGGGGAATCGGTAGAACTCGTAATTCCGCATCAGACCCATAGT
GACCATGTGAAAGTTGTGGATACTATTCAGGTAAATACTGAATTGGAAGGAGTGGATGCATTGGTAACAGACATTCCCGG
TTATTGCTTGTGTGTATCTACGGCCGATTGTGTTCCTGTTTTATTATATGATACCCGAAAGAAGGTAGTGGCTGCCATTC
ATGCCGGATGGCGTGGTACGGTGGCCCGGATTGTGGAGAAGACAGTTTCAGTCATGGATAACCAATACGGCTCGCAAGGG
AAAGATCTCATTGCTTGCATCGGTCCCAGTATTTCATTGGAGGCTTTTGAAGTAGGGGATGAAGTTTATCAAGCTTTTTG
TGAGGCGGGGTTTGATATGAATCAGATTGCCCGTAAAGAAGCAAAATGGCATATTGATTTGTGGGAAGCCAACCGTCAGC
AATTGTTGGCATACGGTGTGAAGCCTGAACATATTGAGATATCCGGCATTTGTACGTATCATAATAACGATGATTTCTTT
TCGGCCCGCCGGCAAGGAATCCGGTCGGGAAGGATATTATCGGGCATTCTTTTAGGTGTCTGA

Upstream 100 bases:

>100_bases
GTGAGGATGAGGACTTTGAATATGAATATGAAGAAGATGCCGATGATGACTTCGATTATGAATATGAAGATGAGAATTGG
GACGAAGAAGAGGAAAAGAA

Downstream 100 bases:

>100_bases
GGAATACGCTCGTTGGAATAACGCAGTATAAAAATAAATATGGAAATAAAAGTATCGGAAGAAATAAAGAAAGCCTGTCC
GCAGTTTGCCGGTATAGCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MKRLTSDNKMLGYELMKAYPNISCFSTTRHGGCSKGNYASFNCNGYCGDEAEDVNRNRELLRSLLPGESVELVIPHQTHS
DHVKVVDTIQVNTELEGVDALVTDIPGYCLCVSTADCVPVLLYDTRKKVVAAIHAGWRGTVARIVEKTVSVMDNQYGSQG
KDLIACIGPSISLEAFEVGDEVYQAFCEAGFDMNQIARKEAKWHIDLWEANRQQLLAYGVKPEHIEISGICTYHNNDDFF
SARRQGIRSGRILSGILLGV

Sequences:

>Translated_260_residues
MKRLTSDNKMLGYELMKAYPNISCFSTTRHGGCSKGNYASFNCNGYCGDEAEDVNRNRELLRSLLPGESVELVIPHQTHS
DHVKVVDTIQVNTELEGVDALVTDIPGYCLCVSTADCVPVLLYDTRKKVVAAIHAGWRGTVARIVEKTVSVMDNQYGSQG
KDLIACIGPSISLEAFEVGDEVYQAFCEAGFDMNQIARKEAKWHIDLWEANRQQLLAYGVKPEHIEISGICTYHNNDDFF
SARRQGIRSGRILSGILLGV
>Mature_260_residues
MKRLTSDNKMLGYELMKAYPNISCFSTTRHGGCSKGNYASFNCNGYCGDEAEDVNRNRELLRSLLPGESVELVIPHQTHS
DHVKVVDTIQVNTELEGVDALVTDIPGYCLCVSTADCVPVLLYDTRKKVVAAIHAGWRGTVARIVEKTVSVMDNQYGSQG
KDLIACIGPSISLEAFEVGDEVYQAFCEAGFDMNQIARKEAKWHIDLWEANRQQLLAYGVKPEHIEISGICTYHNNDDFF
SARRQGIRSGRILSGILLGV

Specific function: Unknown

COG id: COG1496

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0124 family [H]

Homologues:

Organism=Homo sapiens, GI190194374, Length=167, Percent_Identity=29.940119760479, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI190194372, Length=167, Percent_Identity=29.940119760479, Blast_Score=77, Evalue=1e-14,
Organism=Escherichia coli, GI1788945, Length=243, Percent_Identity=35.3909465020576, Blast_Score=117, Evalue=9e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003730
- InterPro:   IPR011324 [H]

Pfam domain/function: PF02578 Cu-oxidase_4 [H]

EC number: NA

Molecular weight: Translated: 28810; Mature: 28810

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLTSDNKMLGYELMKAYPNISCFSTTRHGGCSKGNYASFNCNGYCGDEAEDVNRNREL
CCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
LRSLLPGESVELVIPHQTHSDHVKVVDTIQVNTELEGVDALVTDIPGYCLCVSTADCVPV
HHHHCCCCCEEEEECCCCCCCCEEEEEEEEECCCCCHHHHHHHCCCCEEEEEECCCCEEE
LLYDTRKKVVAAIHAGWRGTVARIVEKTVSVMDNQYGSQGKDLIACIGPSISLEAFEVGD
EEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEHHHHHHH
EVYQAFCEAGFDMNQIARKEAKWHIDLWEANRQQLLAYGVKPEHIEISGICTYHNNDDFF
HHHHHHHHCCCCHHHHHHHHCCEEEEEECCCCHHEEEECCCCCEEEEEEEEEECCCCHHH
SARRQGIRSGRILSGILLGV
HHHHHCCCCCHHHHHHHHCC
>Mature Secondary Structure
MKRLTSDNKMLGYELMKAYPNISCFSTTRHGGCSKGNYASFNCNGYCGDEAEDVNRNREL
CCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
LRSLLPGESVELVIPHQTHSDHVKVVDTIQVNTELEGVDALVTDIPGYCLCVSTADCVPV
HHHHCCCCCEEEEECCCCCCCCEEEEEEEEECCCCCHHHHHHHCCCCEEEEEECCCCEEE
LLYDTRKKVVAAIHAGWRGTVARIVEKTVSVMDNQYGSQGKDLIACIGPSISLEAFEVGD
EEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEHHHHHHH
EVYQAFCEAGFDMNQIARKEAKWHIDLWEANRQQLLAYGVKPEHIEISGICTYHNNDDFF
HHHHHHHHCCCCHHHHHHHHCCEEEEEECCCCHHEEEECCCCCEEEEEEEEEECCCCHHH
SARRQGIRSGRILSGILLGV
HHHHHCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]