Click here to switch to the map view.

The map label for this gene is ycdX [C]

Identifier: 150004037

GI number: 150004037

Start: 1951277

End: 1951987

Strand: Direct

Name: ycdX [C]

Synonym: BVU_1472

Alternate gene names: 150004037

Gene position: 1951277-1951987 (Clockwise)

Preceding gene: 150004036

Following gene: 150004038

Centisome position: 37.79

GC content: 42.76

Gene sequence:

>711_bases
ATGAAGATAGAATTAGACGTACATACCCATACCATTGCCAGCGGGCATGCATTCAGTACTTTACAAGAAATGGCGCAAGC
TGCCGCCGATAAGGGATTGAAGGTTTTAGGGATAACGGAACATTCGCCCGGTGTTCCCGGTACTTGCCATCCTATTTATT
TTAGAAACTTGCATGTGGTTCCCCGCCGGATGTATGGGGTGGAGCTGTTGTTGGGGGCTGAGATTAATATTCTGGATGGT
AAAGGAAACCTCGATTTGGACGAGGATTATATGAAGATGCTTGATATCCGTATTGCGGGTATCCACTCTTTATGTTATGA
ATATGGAACGATAGAAGAAAACACCCATGGAATGGTACAGGTTATCAGCAATCCTTTTATTCATATTATCAGTCACCCCG
GAGACGGTACGGCGGCGTTACATTTTGAACCGATGGTATTGGCAGCCAAAGAACACCATACTTTATTGGAAATAAATAAC
AGTTCTTTAAAACCCACCCGTAACAAACCCAATGCCCGTGAGAACAACCTCACCATTCTCCGTTTATGCAAGAAATATGA
AGTTCCGGTCATTTTGGGAAGTGACGCGCATATTTCGTTTGATATAGCCCGTTACGATAATTTGTATGAATTGTTGCAGC
TTACCGGGTTTCCTGAAGAGCTGATCATGAACCGTGATGTGAAATCATTTAAAGAATACCTTCATTTGTAG

Upstream 100 bases:

>100_bases
AAGATGAACGTTTCCGTTCGTTGTTAGTATATTATGATGTAGATCCACAGTAACCGGTCCATGCACTGGACGATAATAGA
AAAGATAAACGAAAATAAAG

Downstream 100 bases:

>100_bases
ATTATATATGAAAAGAATACTTTTTGTCTGCCTCGGTAACATTTGCAGGTCTTCTTCGGCAGAAGAAGTGATGCGTACTC
TCATAAAGAAAAAAGGACTG

Product: putative hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MKIELDVHTHTIASGHAFSTLQEMAQAAADKGLKVLGITEHSPGVPGTCHPIYFRNLHVVPRRMYGVELLLGAEINILDG
KGNLDLDEDYMKMLDIRIAGIHSLCYEYGTIEENTHGMVQVISNPFIHIISHPGDGTAALHFEPMVLAAKEHHTLLEINN
SSLKPTRNKPNARENNLTILRLCKKYEVPVILGSDAHISFDIARYDNLYELLQLTGFPEELIMNRDVKSFKEYLHL

Sequences:

>Translated_236_residues
MKIELDVHTHTIASGHAFSTLQEMAQAAADKGLKVLGITEHSPGVPGTCHPIYFRNLHVVPRRMYGVELLLGAEINILDG
KGNLDLDEDYMKMLDIRIAGIHSLCYEYGTIEENTHGMVQVISNPFIHIISHPGDGTAALHFEPMVLAAKEHHTLLEINN
SSLKPTRNKPNARENNLTILRLCKKYEVPVILGSDAHISFDIARYDNLYELLQLTGFPEELIMNRDVKSFKEYLHL
>Mature_236_residues
MKIELDVHTHTIASGHAFSTLQEMAQAAADKGLKVLGITEHSPGVPGTCHPIYFRNLHVVPRRMYGVELLLGAEINILDG
KGNLDLDEDYMKMLDIRIAGIHSLCYEYGTIEENTHGMVQVISNPFIHIISHPGDGTAALHFEPMVLAAKEHHTLLEINN
SSLKPTRNKPNARENNLTILRLCKKYEVPVILGSDAHISFDIARYDNLYELLQLTGFPEELIMNRDVKSFKEYLHL

Specific function: Unknown

COG id: COG1387

COG function: function code ER; Histidinol phosphatase and related hydrolases of the PHP family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PHP family [H]

Homologues:

Organism=Escherichia coli, GI1787271, Length=230, Percent_Identity=33.0434782608696, Blast_Score=129, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004013
- InterPro:   IPR003141
- InterPro:   IPR016195 [H]

Pfam domain/function: PF02811 PHP [H]

EC number: NA

Molecular weight: Translated: 26531; Mature: 26531

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIELDVHTHTIASGHAFSTLQEMAQAAADKGLKVLGITEHSPGVPGTCHPIYFRNLHVV
CEEEEEEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEECEEEE
PRRMYGVELLLGAEINILDGKGNLDLDEDYMKMLDIRIAGIHSLCYEYGTIEENTHGMVQ
CHHHCCEEEEECCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
VISNPFIHIISHPGDGTAALHFEPMVLAAKEHHTLLEINNSSLKPTRNKPNARENNLTIL
ECCCCEEEEEECCCCCEEEEEECCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCHHE
RLCKKYEVPVILGSDAHISFDIARYDNLYELLQLTGFPEELIMNRDVKSFKEYLHL
EEHHHCCCCEEECCCCEEEEEHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCC
>Mature Secondary Structure
MKIELDVHTHTIASGHAFSTLQEMAQAAADKGLKVLGITEHSPGVPGTCHPIYFRNLHVV
CEEEEEEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEECEEEE
PRRMYGVELLLGAEINILDGKGNLDLDEDYMKMLDIRIAGIHSLCYEYGTIEENTHGMVQ
CHHHCCEEEEECCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
VISNPFIHIISHPGDGTAALHFEPMVLAAKEHHTLLEINNSSLKPTRNKPNARENNLTIL
ECCCCEEEEEECCCCCEEEEEECCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCHHE
RLCKKYEVPVILGSDAHISFDIARYDNLYELLQLTGFPEELIMNRDVKSFKEYLHL
EEHHHCCCCEEECCCCEEEEEHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA