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The map label for this gene is xerC [H]

Identifier: 150004015

GI number: 150004015

Start: 1928382

End: 1928984

Strand: Reverse

Name: xerC [H]

Synonym: BVU_1450

Alternate gene names: 150004015

Gene position: 1928984-1928382 (Counterclockwise)

Preceding gene: 150004017

Following gene: 150004014

Centisome position: 37.36

GC content: 41.13

Gene sequence:

>603_bases
TTGGAAGAATCGAAAGACCCTTGTAAAGATATTACCTGCAAAGTGGATAGTCAGATGCTTCGGAAAGATGTGCTTTCGCC
CGAAGAAGTACAAAAGCTGATGGCTTGTCATTATGACAACGAAAACCCTACAGTCAGACAAGCGTTTATCTTTTGCCTAT
ATTGCGGTCTGCGCTTCTGCAATGTAAAAGATCTTACTTTTAAAAATGTGGATTATGCTAACCGATTATTGAAGTTCGAG
CAAAGCAAGGCCAAGGAACATTCTGCCAGTAGTGGTGTGGTTATTCCTTTGAATGACGGTCTATTGTCTATCATTGGTGA
AGCTCCGACAGATAAGAACTGTTTAATATTCGATTTGTCTACATACGAAAGCTGCTGTAAATCTGTAAAGCGTTGGGTAA
AGAGAGCTGGGATAGACAAACATATAAGCTGGCACCTTGCTCGGCATTCGTTTGCCGTGAACATTTTGAACAATGGGGCA
AATATCAAAACCGTAGCCAGCCTTTTAGGGCATAGCGGATTGAAGCATACGGAGAAATACACCCGTGCGGTGGATAAATT
GAAAGAGGAAGCAATAAACAGCTTACCCGAATTAAAGTTTTAA

Upstream 100 bases:

>100_bases
AATCGCACAAAGTTCATCCACCTTAGCAGGAACTTTCAGATAGTTCATGTAAGAATGTCCGCCAACATCAGCCGTAACAC
CACATAAGCGAAATTCTCCT

Downstream 100 bases:

>100_bases
CCACAAAAGACTTATCTTTGTAACTATGAACTTTGAAGTATTAGTAAAACATATCAGCACGATACAGAACACGTTGCAGG
CACAAGCCGCACATGCTGTA

Product: putative integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MEESKDPCKDITCKVDSQMLRKDVLSPEEVQKLMACHYDNENPTVRQAFIFCLYCGLRFCNVKDLTFKNVDYANRLLKFE
QSKAKEHSASSGVVIPLNDGLLSIIGEAPTDKNCLIFDLSTYESCCKSVKRWVKRAGIDKHISWHLARHSFAVNILNNGA
NIKTVASLLGHSGLKHTEKYTRAVDKLKEEAINSLPELKF

Sequences:

>Translated_200_residues
MEESKDPCKDITCKVDSQMLRKDVLSPEEVQKLMACHYDNENPTVRQAFIFCLYCGLRFCNVKDLTFKNVDYANRLLKFE
QSKAKEHSASSGVVIPLNDGLLSIIGEAPTDKNCLIFDLSTYESCCKSVKRWVKRAGIDKHISWHLARHSFAVNILNNGA
NIKTVASLLGHSGLKHTEKYTRAVDKLKEEAINSLPELKF
>Mature_200_residues
MEESKDPCKDITCKVDSQMLRKDVLSPEEVQKLMACHYDNENPTVRQAFIFCLYCGLRFCNVKDLTFKNVDYANRLLKFE
QSKAKEHSASSGVVIPLNDGLLSIIGEAPTDKNCLIFDLSTYESCCKSVKRWVKRAGIDKHISWHLARHSFAVNILNNGA
NIKTVASLLGHSGLKHTEKYTRAVDKLKEEAINSLPELKF

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 22623; Mature: 22623

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
4.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEESKDPCKDITCKVDSQMLRKDVLSPEEVQKLMACHYDNENPTVRQAFIFCLYCGLRFC
CCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC
NVKDLTFKNVDYANRLLKFEQSKAKEHSASSGVVIPLNDGLLSIIGEAPTDKNCLIFDLS
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHCCCCCCCCEEEEECH
TYESCCKSVKRWVKRAGIDKHISWHLARHSFAVNILNNGANIKTVASLLGHSGLKHTEKY
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEEEECCCCCHHHHHHHHCCCCCHHHHHH
TRAVDKLKEEAINSLPELKF
HHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MEESKDPCKDITCKVDSQMLRKDVLSPEEVQKLMACHYDNENPTVRQAFIFCLYCGLRFC
CCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC
NVKDLTFKNVDYANRLLKFEQSKAKEHSASSGVVIPLNDGLLSIIGEAPTDKNCLIFDLS
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHCCCCCCCCEEEEECH
TYESCCKSVKRWVKRAGIDKHISWHLARHSFAVNILNNGANIKTVASLLGHSGLKHTEKY
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEEEECCCCCHHHHHHHHCCCCCHHHHHH
TRAVDKLKEEAINSLPELKF
HHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA