Click here to switch to the map view.

The map label for this gene is rbpE [H]

Identifier: 150003979

GI number: 150003979

Start: 1889049

End: 1889420

Strand: Direct

Name: rbpE [H]

Synonym: BVU_1413

Alternate gene names: 150003979

Gene position: 1889049-1889420 (Clockwise)

Preceding gene: 150003978

Following gene: 150003989

Centisome position: 36.59

GC content: 44.35

Gene sequence:

>372_bases
ATGAACATTTTTATTGCAGGGCTTAACTATAATATGAGTGAAGCCGAACTTGGAGAATTATTTGCAGAGTATGGTGAAGT
TGTTTCTGTTAAGATTATAATGGACAGAGAGACCGGTCGTTCTAAGGGATATGGTTTTGTTGAAATGGCTGATGATGAAG
CTGGAGATAAAGCGATTGCAGCTCTTAATGAAGTGGACATGGATGGAAAAACTCTTTCTGTGTCAGTAGCTCGTCCTAGA
GAAGAACGTCCGCGTCGTAGCTATGGCAACAATGGCGGTGGTGGTTATCGTGGCGGTAACAACAGTCGTGGTGGTGGCTA
TGGTGGTAGTCGCGGAGATAATGGCTATGGCGGTGGCAGAAACAGATATTGA

Upstream 100 bases:

>100_bases
CCAACTTATTCTTTAGTGATGATGGTAGAATCGTTTGTCTCTCTGTAAGATTCCTAATAGCAAAACGCACTTATTTTTTT
ATTAAAACATTTATTTTAAA

Downstream 100 bases:

>100_bases
TCTGTATCTCTATAAAATATAAGGGAACCTGTCTTGGACATTTGAAATGCTGAGGCAGGTTTTTAAGTGCCTGTTCAGGA
TATCTTCAAAAGACTTTGGC

Product: putative RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 123

Protein sequence:

>123_residues
MNIFIAGLNYNMSEAELGELFAEYGEVVSVKIIMDRETGRSKGYGFVEMADDEAGDKAIAALNEVDMDGKTLSVSVARPR
EERPRRSYGNNGGGGYRGGNNSRGGGYGGSRGDNGYGGGRNRY

Sequences:

>Translated_123_residues
MNIFIAGLNYNMSEAELGELFAEYGEVVSVKIIMDRETGRSKGYGFVEMADDEAGDKAIAALNEVDMDGKTLSVSVARPR
EERPRRSYGNNGGGGYRGGNNSRGGGYGGSRGDNGYGGGRNRY
>Mature_123_residues
MNIFIAGLNYNMSEAELGELFAEYGEVVSVKIIMDRETGRSKGYGFVEMADDEAGDKAIAALNEVDMDGKTLSVSVARPR
EERPRRSYGNNGGGGYRGGNNSRGGGYGGSRGDNGYGGGRNRY

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI115511032, Length=78, Percent_Identity=43.5897435897436, Blast_Score=70, Evalue=5e-13,
Organism=Homo sapiens, GI283945537, Length=78, Percent_Identity=43.5897435897436, Blast_Score=70, Evalue=6e-13,
Organism=Homo sapiens, GI283945529, Length=78, Percent_Identity=43.5897435897436, Blast_Score=70, Evalue=6e-13,
Organism=Homo sapiens, GI49355765, Length=78, Percent_Identity=42.3076923076923, Blast_Score=68, Evalue=2e-12,
Organism=Homo sapiens, GI49355761, Length=78, Percent_Identity=42.3076923076923, Blast_Score=68, Evalue=2e-12,
Organism=Homo sapiens, GI221139802, Length=92, Percent_Identity=38.0434782608696, Blast_Score=68, Evalue=2e-12,
Organism=Homo sapiens, GI221316773, Length=78, Percent_Identity=42.3076923076923, Blast_Score=68, Evalue=2e-12,
Organism=Homo sapiens, GI221316771, Length=78, Percent_Identity=42.3076923076923, Blast_Score=68, Evalue=2e-12,
Organism=Homo sapiens, GI221316767, Length=78, Percent_Identity=42.3076923076923, Blast_Score=68, Evalue=2e-12,
Organism=Homo sapiens, GI35493811, Length=82, Percent_Identity=35.3658536585366, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI4757926, Length=82, Percent_Identity=35.3658536585366, Blast_Score=67, Evalue=4e-12,
Organism=Homo sapiens, GI38201714, Length=81, Percent_Identity=41.9753086419753, Blast_Score=66, Evalue=8e-12,
Organism=Homo sapiens, GI4557493, Length=73, Percent_Identity=39.7260273972603, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI4502847, Length=99, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=2e-11,
Organism=Homo sapiens, GI5803137, Length=75, Percent_Identity=36, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI221316765, Length=84, Percent_Identity=40.4761904761905, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI221316769, Length=84, Percent_Identity=40.4761904761905, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI34577105, Length=83, Percent_Identity=38.5542168674699, Blast_Score=64, Evalue=4e-11,
Organism=Homo sapiens, GI34577107, Length=76, Percent_Identity=39.4736842105263, Blast_Score=63, Evalue=7e-11,
Organism=Homo sapiens, GI18201888, Length=82, Percent_Identity=41.4634146341463, Blast_Score=62, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=80, Percent_Identity=35, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=38.1578947368421, Blast_Score=66, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71980775, Length=84, Percent_Identity=40.4761904761905, Blast_Score=66, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17532863, Length=86, Percent_Identity=36.046511627907, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=31.1688311688312, Blast_Score=63, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=36.3636363636364, Blast_Score=62, Evalue=6e-11,
Organism=Drosophila melanogaster, GI221330653, Length=81, Percent_Identity=45.679012345679, Blast_Score=70, Evalue=3e-13,
Organism=Drosophila melanogaster, GI221330652, Length=81, Percent_Identity=45.679012345679, Blast_Score=70, Evalue=3e-13,
Organism=Drosophila melanogaster, GI62471589, Length=81, Percent_Identity=45.679012345679, Blast_Score=70, Evalue=3e-13,
Organism=Drosophila melanogaster, GI19549692, Length=81, Percent_Identity=45.679012345679, Blast_Score=70, Evalue=3e-13,
Organism=Drosophila melanogaster, GI19549688, Length=81, Percent_Identity=45.679012345679, Blast_Score=70, Evalue=3e-13,
Organism=Drosophila melanogaster, GI19549690, Length=81, Percent_Identity=45.679012345679, Blast_Score=70, Evalue=3e-13,
Organism=Drosophila melanogaster, GI19549694, Length=81, Percent_Identity=45.679012345679, Blast_Score=70, Evalue=3e-13,
Organism=Drosophila melanogaster, GI17137710, Length=82, Percent_Identity=37.8048780487805, Blast_Score=69, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 13160; Mature: 13160

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIFIAGLNYNMSEAELGELFAEYGEVVSVKIIMDRETGRSKGYGFVEMADDEAGDKAIA
CEEEEEECCCCCCHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHH
ALNEVDMDGKTLSVSVARPREERPRRSYGNNGGGGYRGGNNSRGGGYGGSRGDNGYGGGR
HHHHCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NRY
CCC
>Mature Secondary Structure
MNIFIAGLNYNMSEAELGELFAEYGEVVSVKIIMDRETGRSKGYGFVEMADDEAGDKAIA
CEEEEEECCCCCCHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHH
ALNEVDMDGKTLSVSVARPREERPRRSYGNNGGGGYRGGNNSRGGGYGGSRGDNGYGGGR
HHHHCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NRY
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]